Rorug06G0397600

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005253
Physical Location & Seq
Forward (+)
54343802 .. 54347096
3295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0397600.1

Sequence Viewer

Length: 1113 bp
ATGGGTTGGAAATACAACGCAGGATTGGGGTTGATTGGTGCCGTCGTCTTCATATGGGTCGCCTCTGCAGAGGTTACTCAGAGAATTTTCACAGAGTACAAACAGCCTTTTTCACTCACCTATCTCGGTGTGTCCCTCATGGTCGTCTATCTACCTATAGCAGCCCTCAAGGACTGGATCTGCAGCTTACTGAGAACAAATGAATTTCATGACAGTGCAGAAACAGATGTCACAACTTCCTTAATTACTGATAAAGACCTCAGTGATCGAGAAGAAGGGCGCCCTGTAATGGATAAGAATGAAGTAGATGAGCCTTACTTTCTTGCAAAAAGTAATCAACTTGGTCCATGGGAAATTGCAAAATTTGGCTTAATACTTACTCCAGCATGGTTTATCACAGAGTATATGTCAAATTCTGCACTGGCAAATACTAGTGTTGCAAGTACAACTGTCCTAACTTCTACGTCGGGGCTCTTTACACTTTTGTTTGGAGCACTTCTTCGTCAGGACTCCATAAACATTCCAAAGATGGTTGCTGTTTTTATCAGCATGGCTGGTGTTGCCATGACCACAGCTGGAAAAACTTGGGCACCTGATGAACTGCCGAGCGTCTCTGAGACTAGAAAGCACTCAATAACAGGAGACATTTTCGGTCTTGTGTCAGCAGCATCATATGGATTATTCACAGTGTTACTCAAGAAATTTGCTGGATCAGAAGAGGAAGGGGATAAGGCTGATGTGCAAAAGCTATTCGGATACATTGGTCTCTTCACTCTTCTTGGTCTGTGGTGGCTTGTGTGGCCGCTGAATGCTATGGGGATTGAACCGTCTTTTGAATTTCCACCATCAGGATCTGTTGGGGAAGCTGTGCTGTTAAATGGCTTTGTGGGGAGTGTTCTTTCAGATTATTTTTGGGCTCTTTCTGTAGTTTGGACATCTCCATTAGTTGCAACTCTGGGCATGTCCTTGACAATTCCCCTTGCTATGGTTGCTGACATGGTGATTCATGGCCGTTGTTACTCTGCAATCTACATCTTTGGTTGCATTCAGGTTTTTGCAGGATTTGTCATGGCAAACCTTTCAGACAAGTTTTCTAGCAAGGAAGAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

370

Amino Acids

40.42

Weight (kDa)

4.7

Isoelectric Point (pI)

29.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 112 - 191 2.4e-06 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 38, 279, 589
AciI CCGC 1 cut(s) 803
AclWI GGATC 3 cut(s) 185, 718, 859
AcoI YGGCCR 2 cut(s) 800, 1009
AcsI RAATTY 6 cut(s) 84, 203, 362, 412, 701, 836
AcyI GRCGYC 1 cut(s) 280
AfaI GTAC 2 cut(s) 98, 445
AfiI CCNNNNNNNGG 3 cut(s) 289, 848, 985
AgsI TTSAA 2 cut(s) 824, 836
AhlI ACTAGT 1 cut(s) 431
AluBI AGCT 4 cut(s) 186, 575, 748, 866
AluI AGCT 4 cut(s) 186, 575, 748, 866
Alw21I GWGCWC 1 cut(s) 496
Alw26I GTCTC 4 cut(s) 611, 616, 636, 770
AlwI GGATC 3 cut(s) 185, 718, 859
AlwNI CAGNNNCTG 1 cut(s) 854
AoxI GGCC 2 cut(s) 800, 1009
ApeKI GCWGC 3 cut(s) 161, 183, 665
ApoI RAATTY 6 cut(s) 84, 203, 362, 412, 701, 836
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 344
AsuHPI GGTGA 2 cut(s) 109, 1012
AvaII GGWCC 1 cut(s) 344
BaeGI GKGCMC 1 cut(s) 592
BaeI ACNNNNGTAYC 2 cut(s) 748, 781
BanI GGYRCC 3 cut(s) 38, 279, 589
BanII GRGCYC 2 cut(s) 474, 919
BbsI GAAGAC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 496
BbvI GCAGC 3 cut(s) 173, 195, 677
BccI CCATC 2 cut(s) 523, 853
BceAI ACGGC 2 cut(s) 26, 996
BciVI GTATCC 1 cut(s) 749
BcoDI GTCTC 4 cut(s) 611, 616, 636, 770
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 3 cut(s) 432, 621, 1095
BfmI CTRYAG 4 cut(s) 66, 156, 181, 924
BfoI RGCGCY 1 cut(s) 283
BfuI GTATCC 1 cut(s) 749
BisI GCNGC 4 cut(s) 162, 184, 666, 803
BlsI GCNGC 4 cut(s) 163, 185, 667, 804
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 3 cut(s) 40, 281, 591
BmsI GCATC 1 cut(s) 677
BpiI GAAGAC 1 cut(s) 40
BpmI CTGGAG 1 cut(s) 366
BpuEI CTTGAG 2 cut(s) 152, 680
BsaHI GRCGYC 1 cut(s) 280
BsaI GGTCTC 1 cut(s) 770
BsaJI CCNNGG 1 cut(s) 347
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 848, 985
Bse1I ACTGG 2 cut(s) 179, 426
BseDI CCNNGG 1 cut(s) 347
BseLI CCNNNNNNNGG 3 cut(s) 289, 848, 985
BseMII CTCAG 4 cut(s) 92, 182, 274, 606
BseNI ACTGG 2 cut(s) 179, 426
BseSI GKGCMC 1 cut(s) 592
BseXI GCAGC 3 cut(s) 173, 195, 677
BsgI GTGCAG 2 cut(s) 237, 402
BshFI GGCC 2 cut(s) 802, 1011
BshNI GGYRCC 3 cut(s) 38, 279, 589
BsiHKAI GWGCWC 1 cut(s) 496
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 3 cut(s) 289, 848, 985
BsmAI GTCTC 4 cut(s) 611, 616, 636, 770
BsmBI CGTCTC 1 cut(s) 616
BsmFI GGGAC 1 cut(s) 118
BsmI GAATGC 2 cut(s) 814, 1044
BsnI GGCC 2 cut(s) 802, 1011
Bso31I GGTCTC 1 cut(s) 770
Bsp1286I GDGCHC 4 cut(s) 474, 496, 592, 919
Bsp143I GATC 4 cut(s) 177, 265, 710, 851
Bsp19I CCATGG 1 cut(s) 347
BspACI CCGC 1 cut(s) 803
BspANI GGCC 2 cut(s) 802, 1011
BspCNI CTCAG 4 cut(s) 91, 183, 273, 607
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 3 cut(s) 40, 281, 591
BspMAI CTGCAG 2 cut(s) 70, 185
BspPI GGATC 3 cut(s) 185, 718, 859
BspT107I GGYRCC 3 cut(s) 38, 279, 589
BspTNI GGTCTC 1 cut(s) 770
BsrI ACTGG 2 cut(s) 179, 426
BssECI CCNNGG 1 cut(s) 347
BssMI GATC 4 cut(s) 177, 265, 710, 851
BssNI GRCGYC 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 347
Bst4CI ACNGT 4 cut(s) 215, 451, 688, 828
Bst6I CTCTTC 4 cut(s) 711, 773, 780, 1098
BstACI GRCGYC 1 cut(s) 280
BstDEI CTNAG 4 cut(s) 78, 191, 260, 615
BstDSI CCRYGG 1 cut(s) 347
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 4 cut(s) 180, 268, 713, 854
BstMAI GTCTC 4 cut(s) 611, 616, 636, 770
BstMBI GATC 4 cut(s) 177, 265, 710, 851
BstMWI GCNNNNNNNGC 3 cut(s) 560, 799, 989
BstNSI RCATGY 1 cut(s) 964
BstSFI CTRYAG 4 cut(s) 66, 156, 181, 924
BstSLI GKGCMC 1 cut(s) 592
BstV1I GCAGC 3 cut(s) 173, 195, 677
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 2 cut(s) 177, 851
BstYI RGATCY 2 cut(s) 177, 851
BsuI GTATCC 1 cut(s) 749
BsuRI GGCC 2 cut(s) 802, 1011
BtgI CCRYGG 1 cut(s) 347
BtsIMutI CAGTG 4 cut(s) 220, 268, 419, 693
CaiI CAGNNNCTG 1 cut(s) 854
CciI TCATGA 1 cut(s) 208
CfoI GCGC 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 344
CseI GACGC 1 cut(s) 598
Csp6I GTAC 2 cut(s) 97, 444
CviQI GTAC 2 cut(s) 97, 444
DdeI CTNAG 4 cut(s) 78, 191, 260, 615
DinI GGCGCC 1 cut(s) 281
DpnI GATC 4 cut(s) 179, 267, 712, 853
DpnII GATC 4 cut(s) 177, 265, 710, 851
EaeI YGGCCR 2 cut(s) 800, 1009
Eam1104I CTCTTC 4 cut(s) 711, 773, 780, 1098
EarI CTCTTC 4 cut(s) 711, 773, 780, 1098
Eco130I CCWWGG 1 cut(s) 347
Eco24I GRGCYC 2 cut(s) 474, 919
Eco31I GGTCTC 1 cut(s) 770
Eco47I GGWCC 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 347
EcoT38I GRGCYC 2 cut(s) 474, 919
EgeI GGCGCC 1 cut(s) 281
EheI GGCGCC 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 347
Esp3I CGTCTC 1 cut(s) 616
FaqI GGGAC 1 cut(s) 118
FauNDI CATATG 2 cut(s) 53, 673
Fnu4HI GCNGC 4 cut(s) 162, 184, 666, 803
FriOI GRGCYC 2 cut(s) 474, 919
Fsp4HI GCNGC 4 cut(s) 162, 184, 666, 803
FspBI CTAG 3 cut(s) 432, 621, 1095
GlaI GCGC 1 cut(s) 281
GluI GCNGC 4 cut(s) 162, 184, 666, 803
GsuI CTGGAG 1 cut(s) 366
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 2 cut(s) 802, 1011
HgaI GACGC 1 cut(s) 598
HhaI GCGC 1 cut(s) 282
Hin1I GRCGYC 1 cut(s) 280
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HinfI GANTC 2 cut(s) 509, 1003
HphI GGTGA 2 cut(s) 109, 1012
Hpy188I TCNGA 6 cut(s) 81, 616, 715, 755, 904, 1084
Hpy188III TCNNGA 5 cut(s) 209, 269, 506, 697, 849
Hpy99I CGWCG 2 cut(s) 47, 469
HpyAV CCTTC 2 cut(s) 269, 716
HpyCH4III ACNGT 4 cut(s) 215, 451, 688, 828
HpyCH4IV ACGT 1 cut(s) 464
HpyF10VI GCNNNNNNNGC 3 cut(s) 560, 799, 989
HpyF3I CTNAG 4 cut(s) 78, 191, 260, 615
HpySE526I ACGT 1 cut(s) 464
Hsp92I GRCGYC 1 cut(s) 280
HspAI GCGC 1 cut(s) 280
KasI GGCGCC 1 cut(s) 279
Kzo9I GATC 4 cut(s) 177, 265, 710, 851
LmnI GCTCC 1 cut(s) 491
Lsp1109I GCAGC 3 cut(s) 173, 195, 677
LweI GCATC 1 cut(s) 677
MaeI CTAG 3 cut(s) 432, 621, 1095
MaeII ACGT 1 cut(s) 464
MaeIII GTNAC 4 cut(s) 73, 229, 690, 1016
MalI GATC 4 cut(s) 179, 267, 712, 853
MboI GATC 4 cut(s) 177, 265, 710, 851
MboII GAAGA 6 cut(s) 40, 284, 491, 728, 760, 767
MflI RGATCY 2 cut(s) 177, 851
MhlI GDGCHC 4 cut(s) 474, 496, 592, 919
MluCI AATT 9 cut(s) 84, 203, 243, 354, 362, 412, 701, 836, 972
Mly113I GGCGCC 1 cut(s) 280
MlyI GAGTC 1 cut(s) 503
MnlI CCTC 6 cut(s) 64, 73, 146, 176, 269, 712
MseI TTAA 3 cut(s) 242, 371, 875
MslI CAYNNNNRTG 1 cut(s) 213
MspA1I CMGCKG 2 cut(s) 575, 805
Mva1269I GAATGC 2 cut(s) 814, 1044
MwoI GCNNNNNNNGC 3 cut(s) 560, 799, 989
NarI GGCGCC 1 cut(s) 280
NcoI CCATGG 1 cut(s) 347
NdeI CATATG 2 cut(s) 53, 673
NdeII GATC 4 cut(s) 177, 265, 710, 851
NlaIV GGNNCC 3 cut(s) 40, 281, 591
NmeAIII GCCGAG 1 cut(s) 630
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 1 cut(s) 964
PagI TCATGA 1 cut(s) 208
PctI GAATGC 2 cut(s) 814, 1044
PfeI GAWTC 1 cut(s) 1003
PkrI GCNGC 4 cut(s) 163, 185, 667, 804
PleI GAGTC 1 cut(s) 503
PluTI GGCGCC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 503
PspN4I GGNNCC 3 cut(s) 40, 281, 591
PspPI GGNCC 1 cut(s) 344
PstI CTGCAG 2 cut(s) 70, 185
PstNI CAGNNNCTG 1 cut(s) 854
PsuI RGATCY 2 cut(s) 177, 851
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 2 cut(s) 98, 445
RsaNI GTAC 2 cut(s) 97, 444
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 3 cut(s) 242, 371, 875
SatI GCNGC 4 cut(s) 162, 184, 666, 803
Sau3AI GATC 4 cut(s) 177, 265, 710, 851
Sau96I GGNCC 1 cut(s) 344
SchI GAGTC 1 cut(s) 503
SduI GDGCHC 4 cut(s) 474, 496, 592, 919
SfaNI GCATC 1 cut(s) 677
SfcI CTRYAG 4 cut(s) 66, 156, 181, 924
SfoI GGCGCC 1 cut(s) 281
SinI GGWCC 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 2 cut(s) 167, 695
SmoI CTYRAG 2 cut(s) 167, 695
SpeI ACTAGT 1 cut(s) 431
Sse9I AATT 9 cut(s) 84, 203, 243, 354, 362, 412, 701, 836, 972
SsiI CCGC 1 cut(s) 803
SspDI GGCGCC 1 cut(s) 279
SspMI CTAG 3 cut(s) 432, 621, 1095
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 4 cut(s) 215, 451, 688, 828
TaiI ACGT 1 cut(s) 467
TaqI TCGA 1 cut(s) 268
TaqII GACCGA 1 cut(s) 641
TasI AATT 9 cut(s) 84, 203, 243, 354, 362, 412, 701, 836, 972
TatI WGTACW 2 cut(s) 96, 443
TauI GCSGC 1 cut(s) 805
TfiI GAWTC 1 cut(s) 1003
Tru1I TTAA 3 cut(s) 242, 371, 875
Tru9I TTAA 3 cut(s) 242, 371, 875
TscAI CASTG 4 cut(s) 220, 268, 426, 693
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 3 cut(s) 161, 183, 665
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 6 cut(s) 40, 197, 216, 315, 612, 995
TspRI CASTG 4 cut(s) 220, 268, 426, 693
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 6 cut(s) 84, 203, 362, 412, 701, 836
XceI RCATGY 1 cut(s) 964
XspI CTAG 3 cut(s) 432, 621, 1095
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.