Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8415537.1

Orthogroup ID

OG0005253

Physical Location & Seq

Genomic Coordinates Forward (+)

1040 .. 1354

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8415537.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

atggaggagttccactctcatctatcaaatgggaagtgcatgctcacaatagaagcaaaggacaatgaaaagtccatcgaatctctagatagaggactcacagagtatggttgtccgcattatcggcgaaggtgccgcattagggctccttgttgcaatgagatttttgattgtcgccattgtcataatgaagcaaaggtgagtattcaaattattcagcgtgcgtctttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

ko04115 ko04120 ko05162 map04115 map04120 map05162

Pfam Domains

Protein Families

zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

77

Amino Acids

8.99

Weight (kDa)

7.62

Isoelectric Point (pI)

63.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25560 AT5G25560 AT5G25560 AT5G25560 AT5G25560 AT5G25560
fragaria_vesca	FvH4_2g30250 FvH4_2g30250 FvH4_2g30250
malus_domestica	MD08G1135100.v1.1 MD15G1113900.v1.1
prunus_persica	Prupe.1G465000_v2.0.a1
pyrus_communis	pycom08g11400 pycom15g10220
rosa_chinensis	RchiOBHm_Chr6g0312621
rosa_laevigata	RLG00000010310
rosa_multiflora	Rmu_co8415537.1_g000003 Rmu_sc0002859.1_g000008 Rmu_ssc0000412.1_g000002
rosa_roxburghii	Rroxscaffold_7G00156640
rosa_rugosa	Rorug06G0397500 Rorug06G0397600 Rorug06G0397700 Rorug06G0397800
rosa_samantha	Rh6AG515000 Rh6BG525000 Rh6CG530400 Rh6DG517100
rosa_wichuraiana	Rw6G044740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	132
AciI	CCGC	2 cut(s)	116, 136
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	132
BanII	GRGCYC	1 cut(s)	148
BccI	CCATC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	86
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	134, 147
BplI	GAGNNNNNCTC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMI	GCAATG	1 cut(s)	163
BseRI	GAGGAG	1 cut(s)	20
BshNI	GGYRCC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	148
BspACI	CCGC	2 cut(s)	116, 136
BspLI	GGNNCC	2 cut(s)	134, 147
BspT107I	GGYRCC	1 cut(s)	132
BsrDI	GCAATG	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	41, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNSI	RCATGY	1 cut(s)	43
Cac8I	GCNNGC	2 cut(s)	41, 222
CseI	GACGC	1 cut(s)	213
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	1 cut(s)	146
CviKI_1	RGCY	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	148
FaeI	CATG	1 cut(s)	43
FaiI	YATR	3 cut(s)	41, 108, 186
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	136
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	1 cut(s)	136
HgaI	GACGC	1 cut(s)	213
Hin1II	CATG	1 cut(s)	43
HinfI	GANTC	2 cut(s)	80, 96
HphI	GGTGA	1 cut(s)	211
Hpy188III	TCNNGA	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	39, 156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
Hsp92II	CATG	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	86
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	90
MnlI	CCTC	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	124
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	2 cut(s)	134, 147
NspI	RCATGY	1 cut(s)	43
PaeI	GCATGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	134, 147
SatI	GCNGC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	2 cut(s)	134, 201
SgeI	CNNG	3 cut(s)	52, 98, 162
SphI	GCATGC	1 cut(s)	43
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	2 cut(s)	116, 136
SspMI	CTAG	1 cut(s)	86
TaqI	TCGA	1 cut(s)	78
TasI	AATT	1 cut(s)	210
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	81, 204
XbaI	TCTAGA	1 cut(s)	85
XceI	RCATGY	1 cut(s)	43
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.