Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005893

Physical Location & Seq

Genomic Coordinates Forward (+)

7785445 .. 7791902

Gene Structure 6458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G061400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1845 bp

ATGCTACCTCACTATAATTCGTTTCCTCACAATTCCAACCAAGTTCACGTCAATGGTAGCTCTGCTCCATCTCACCAGATACAACCTCAATTGGGTATCAAGAATAATCAAGTTCCAATCCCGTTCAGTAATGCTAATGCACATTTAAGCAATGGGCATGGAGGGGCCATGCCCAATATGCCACCTTCCATGATTGCTCAACCCAATTTCATGGGTGTACCTAACAACCTTCATCCTATGCAAAGTAACCATCTGGGTATGCCTCAATTCGGTTCTGTTGGTCCTACATCTCAACCAGGTCAGCCCCATGTTGGATTTTTCGGTTCACAAAATAATGCACACAGTATGAACTCCGTTGCTTCCTTTCCGCTTCATGGGCAATTCTGCAATTTGGTGCAGAATGTGAATCAAGCGGTTTCATCGCAGCCGCCTGGGCAATTACTTGGGCATAACCTGTTAAATTTACCACAACAGATCAACCAAAATATGGGTTTGCCATATGGACAATTCTGTTTGCCAAATCCATTGCAAAATATGAATCAATTTGTGCAAATGCAAATGCATAATCCATCCCAACTTGGTCCTAATTATGCTTTTGCCGGATTGAATCAAGCACCTCAGGCTACAGTTTCTCAAAATTCCCCCTTTTTTGCAACTCATCAGTTCGGTAATGTGCATTCTAATCAGGCAGGCCAGCAAGTTAACCAGAATCAGCAAAACTTGGTTCTGCCTGCAATGCAAGGGACACAGTTTGGTGCGTATTCTAATCAGGCAGGCCAGCAAGTTAACCAGAATCAGCAAAACTCGGTTCTGCCTGCAAAGCAAGGGACACAGTTTTTTCAGGGAAATCATACGAACACTGGTGGTGTTTACAGTTCAAATACCAATTGGAAACATTCACCAAGCAAAAGCTTTACAAAGCATCCAAAAAGAGGGGTGCAGCTGCAAGGGGGATTTCAGAATTCTCAGTTCCATCATATGAAAAATGCAAAGGGAAAGTTTGCTTTTCCTAACGGGAACAAAGGAAAAGGGTTGATAAATGAGAGCAAAGGAAAGTTTACAAACCAAGGCGGGGAAGGGAAAAGATCTCTTTCTTTGCCCTATACTGAACAAGAGATTCAGCGGTGGCGTGAAGAACGCAGAAGGCACTACCCATCAAAATCCAACATAGAGAAGAAGCTAAGTGAAAAGCTGATAAACTCAGAGGTCATTGAGAGAGAGGCCAAAATGCGACGAGAGCAACTGAAGGAGATTCTTACAAAGCAGGCTGAGTTGGGAGTTGAAGTTGCCGAAATACCATCATACTACCTTGAAGATTCAAATCAAGGGCATAGAAGAGAAGACAATAAGTCTTTCACTAAGAAGGGGAGATTACCAAACAATTTTGGTAAGAGAGAAAAGTATGATAAAAAGGATCGGTTTGCCAAGAGGCAAAAATCTCATCACAAGGATTCATCTAATGACCCTTCTTTCAGCAAAAGGGAGCCAACCTTACTGCAGAAACTTCTTAGTGCAGATATAAAGAGAGATAGAAGCCGTCTGCTGCAGGTGTTTAGGTTCATGGTGACAAACTCTTTCTTCAAAGATTGTCCTGAAAAACCTTTGAAATTTCCTACGGTGGCAGTTAAAGAAAGTGGGTGCAATGAAGACATGGCTGAAGAACTGTCTTCACTTGCAGCGAAAGATGCTTCTAAAGGCAGTGACAATTCCATGGTTGAAATAGTTCATAACAATGATTATGAATATCATAATGATGTTTGTAATTATGATGATGGTGGTGGTGAAGATGATGAAGAAGGGGGAATTGAGAGAGCTGAGGAAGAAGAGGGAGAGATCATAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

NUFIP1

Protein Analysis

615

Amino Acids

68.58

Weight (kDa)

8.98

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18440 AT5G18440
fragaria_vesca	FvH4_1g30390 FvH4_1g30390 FvH4_1g30390 FvH4_1g30390
malus_domestica	MD02G1263300.v1.1 MD07G1054700.v1.1
prunus_persica	Prupe.2G061400_v2.0.a1 Prupe.2G061400_v2.0.a1 Prupe.2G061400_v2.0.a1 Prupe.2G061400_v2.0.a1
pyrus_communis	pycom02g22570 pycom07g04250
rosa_chinensis	RchiOBHm_Chr3g0490591
rosa_laevigata	RLG00000022881
rosa_multiflora	Rmu_sc0007326.1_g000001 Rmu_sc0035249.1_g000001
rosa_roxburghii	Rroxscaffold_6G00393380
rosa_rugosa	Rorug03G0244300 Rorug03G0244400 Rorug03G0244500 Rorug03G0244600
rosa_samantha	Rh3AG294000 Rh3BG330200 Rh3CG327600 Rh3DG326900
rosa_wichuraiana	Rw3G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1537
Acc36I	ACCTGC	1 cut(s)	1537
AccB7I	CCANNNNNTGG	1 cut(s)	487
AciI	CCGC	5 cut(s)	368, 413, 428, 1071, 1123
AclWI	GGATC	1 cut(s)	1422
AcsI	RAATTY	4 cut(s)	460, 637, 961, 1607
AcuI	CTGAAG	2 cut(s)	1265, 1677
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	7 cut(s)	92, 269, 311, 374, 487, 932, 1072
AgsI	TTSAA	8 cut(s)	607, 879, 1283, 1313, 1320, 1582, 1606, 1718
AhdI	GACNNNNNGTC	1 cut(s)	1348
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	295, 430
AluBI	AGCT	6 cut(s)	60, 912, 943, 1180, 1192, 1814
AluI	AGCT	6 cut(s)	60, 912, 943, 1180, 1192, 1814
AlwI	GGATC	1 cut(s)	1422
AoxI	GGCC	4 cut(s)	165, 691, 775, 1221
ApeKI	GCWGC	5 cut(s)	424, 940, 943, 1543, 1676
ApoI	RAATTY	4 cut(s)	460, 637, 961, 1607
Asp700I	GAANNNNTTC	1 cut(s)	1722
AspS9I	GGNCC	3 cut(s)	165, 281, 581
AsuHPI	GGTGA	4 cut(s)	65, 891, 1576, 1793
AvaII	GGWCC	2 cut(s)	281, 581
AxyI	CCTNAGG	1 cut(s)	618
BbsI	GAAGAC	3 cut(s)	1347, 1653, 1659
BbvCI	CCTCAGC	1 cut(s)	1815
BbvI	GCAGC	5 cut(s)	436, 930, 952, 1530, 1688
BccI	CCATC	7 cut(s)	76, 258, 577, 981, 1162, 1306, 1766
BceAI	ACGGC	1 cut(s)	1521
BciT130I	CCWGG	2 cut(s)	297, 432
BfaI	CTAG	1 cut(s)	1843
BfmI	CTRYAG	3 cut(s)	624, 1496, 1544
BfuAI	ACCTGC	1 cut(s)	1537
BglI	GCCNNNNNGGC	1 cut(s)	433
BglII	AGATCT	1 cut(s)	1085
BisI	GCNGC	6 cut(s)	425, 428, 941, 944, 1544, 1677
BlsI	GCNGC	6 cut(s)	426, 429, 942, 945, 1545, 1678
Bme1390I	CCNGG	2 cut(s)	297, 432
Bme18I	GGWCC	2 cut(s)	281, 581
BmeRI	GACNNNNNGTC	1 cut(s)	1348
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	3 cut(s)	165, 281, 581
BmiI	GGNNCC	2 cut(s)	166, 1485
BmrFI	CCNGG	2 cut(s)	297, 432
BmsI	GCATC	2 cut(s)	931, 1675
BpiI	GAAGAC	3 cut(s)	1347, 1653, 1659
Bpu10I	CCTNAGC	1 cut(s)	1815
BsaBI	GATNNNNATC	1 cut(s)	1320
BsaJI	CCNNGG	3 cut(s)	431, 1066, 1710
BsaXI	ACNNNNNCTCC	2 cut(s)	1269, 1299
Bsc4I	CCNNNNNNNGG	7 cut(s)	92, 269, 311, 374, 487, 932, 1072
Bse1I	ACTGG	1 cut(s)	865
Bse21I	CCTNAGG	1 cut(s)	618
Bse3DI	GCAATG	4 cut(s)	157, 524, 741, 1648
Bse8I	GATNNNNATC	1 cut(s)	1320
BseBI	CCWGG	2 cut(s)	297, 432
BseDI	CCNNGG	3 cut(s)	431, 1066, 1710
BseGI	GGATG	3 cut(s)	232, 569, 922
BseJI	GATNNNNATC	1 cut(s)	1320
BseLI	CCNNNNNNNGG	7 cut(s)	92, 269, 311, 374, 487, 932, 1072
BseMI	GCAATG	4 cut(s)	157, 524, 741, 1648
BseMII	CTCAG	5 cut(s)	632, 980, 1215, 1260, 1806
BseNI	ACTGG	1 cut(s)	865
BseXI	GCAGC	5 cut(s)	436, 930, 952, 1530, 1688
BsgI	GTGCAG	3 cut(s)	416, 959, 1533
BshFI	GGCC	4 cut(s)	167, 693, 777, 1223
BsiSI	CCGG	1 cut(s)	600
BslFI	GGGAC	2 cut(s)	757, 841
BslI	CCNNNNNNNGG	7 cut(s)	92, 269, 311, 374, 487, 932, 1072
BsmFI	GGGAC	2 cut(s)	757, 841
BsmI	GAATGC	1 cut(s)	676
BsnI	GGCC	4 cut(s)	167, 693, 777, 1223
Bsp143I	GATC	4 cut(s)	474, 1085, 1414, 1833
Bsp19I	CCATGG	1 cut(s)	1710
BspACI	CCGC	5 cut(s)	368, 413, 428, 1071, 1123
BspANI	GGCC	4 cut(s)	167, 693, 777, 1223
BspCNI	CTCAG	5 cut(s)	631, 979, 1214, 1261, 1807
BspLI	GGNNCC	2 cut(s)	166, 1485
BspMAI	CTGCAG	2 cut(s)	1500, 1548
BspMI	ACCTGC	1 cut(s)	1537
BspPI	GGATC	1 cut(s)	1422
BsrDI	GCAATG	4 cut(s)	157, 524, 741, 1648
BsrI	ACTGG	1 cut(s)	865
BssECI	CCNNGG	3 cut(s)	431, 1066, 1710
BssMI	GATC	4 cut(s)	474, 1085, 1414, 1833
BssT1I	CCWWGG	2 cut(s)	1066, 1710
Bst2UI	CCWGG	2 cut(s)	297, 432
Bst4CI	ACNGT	7 cut(s)	344, 628, 750, 834, 875, 1618, 1665
Bst6I	CTCTTC	2 cut(s)	1330, 1818
BstC8I	GCNNGC	7 cut(s)	691, 695, 732, 775, 779, 816, 1266
BstDEI	CTNAG	8 cut(s)	618, 966, 1181, 1201, 1269, 1359, 1508, 1815
BstDSI	CCRYGG	1 cut(s)	1710
BstF5I	GGATG	3 cut(s)	232, 569, 922
BstKTI	GATC	4 cut(s)	477, 1088, 1417, 1836
BstMBI	GATC	4 cut(s)	474, 1085, 1414, 1833
BstMWI	GCNNNNNNNGC	8 cut(s)	178, 376, 433, 620, 736, 820, 1237, 1685
BstNI	CCWGG	2 cut(s)	297, 432
BstSCI	CCNGG	2 cut(s)	295, 430
BstSFI	CTRYAG	3 cut(s)	624, 1496, 1544
BstV1I	GCAGC	5 cut(s)	436, 930, 952, 1530, 1688
BstV2I	GAAGAC	3 cut(s)	1347, 1653, 1659
BstX2I	RGATCY	1 cut(s)	1085
BstXI	CCANNNNNNTGG	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	1085
Bsu36I	CCTNAGG	1 cut(s)	618
BsuRI	GGCC	4 cut(s)	167, 693, 777, 1223
BtgI	CCRYGG	1 cut(s)	1710
BtgZI	GCGATG	1 cut(s)	405
BtrI	CACGTC	1 cut(s)	49
BtsCI	GGATG	3 cut(s)	232, 569, 922
BtsI	GCAGTG	1 cut(s)	1705
BtsIMutI	CAGTG	2 cut(s)	858, 1705
BveI	ACCTGC	1 cut(s)	1537
Cac8I	GCNNGC	7 cut(s)	691, 695, 732, 775, 779, 816, 1266
Cfr13I	GGNCC	3 cut(s)	165, 281, 581
CsiI	ACCWGGT	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	9 cut(s)	158, 169, 190, 211, 308, 374, 1561, 1651, 1711
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	8 cut(s)	618, 966, 1181, 1201, 1269, 1359, 1508, 1815
DpnI	GATC	4 cut(s)	476, 1087, 1416, 1835
DpnII	GATC	4 cut(s)	474, 1085, 1414, 1833
DriI	GACNNNNNGTC	1 cut(s)	1348
Eam1104I	CTCTTC	2 cut(s)	1330, 1818
Eam1105I	GACNNNNNGTC	1 cut(s)	1348
EarI	CTCTTC	2 cut(s)	1330, 1818
Eco130I	CCWWGG	2 cut(s)	1066, 1710
Eco47I	GGWCC	2 cut(s)	281, 581
Eco57I	CTGAAG	2 cut(s)	1265, 1677
Eco81I	CCTNAGG	1 cut(s)	618
EcoRI	GAATTC	1 cut(s)	961
EcoRII	CCWGG	2 cut(s)	295, 430
EcoT14I	CCWWGG	2 cut(s)	1066, 1710
EcoT22I	ATGCAT	1 cut(s)	564
ErhI	CCWWGG	2 cut(s)	1066, 1710
FaeI	CATG	9 cut(s)	161, 172, 193, 214, 311, 377, 1564, 1654, 1714
FaqI	GGGAC	2 cut(s)	757, 841
FatI	CATG	9 cut(s)	157, 168, 189, 210, 307, 373, 1560, 1650, 1710
FauI	CCCGC	1 cut(s)	1064
FauNDI	CATATG	2 cut(s)	499, 978
Fnu4HI	GCNGC	6 cut(s)	425, 428, 941, 944, 1544, 1677
FokI	GGATG	3 cut(s)	219, 556, 909
Fsp4HI	GCNGC	6 cut(s)	425, 428, 941, 944, 1544, 1677
FspBI	CTAG	1 cut(s)	1843
GluI	GCNGC	6 cut(s)	425, 428, 941, 944, 1544, 1677
HaeIII	GGCC	4 cut(s)	167, 693, 777, 1223
HapII	CCGG	1 cut(s)	600
Hin1II	CATG	9 cut(s)	161, 172, 193, 214, 311, 377, 1564, 1654, 1714
HincII	GTYRAC	2 cut(s)	703, 787
HindII	GTYRAC	2 cut(s)	703, 787
HindIII	AAGCTT	1 cut(s)	910
HinfI	GANTC	9 cut(s)	406, 538, 607, 709, 793, 1117, 1252, 1316, 1451
HpaI	GTTAAC	2 cut(s)	703, 787
HpaII	CCGG	1 cut(s)	600
HphI	GGTGA	4 cut(s)	65, 891, 1576, 1793
Hpy166II	GTNNAC	7 cut(s)	46, 218, 326, 703, 787, 871, 1059
Hpy188I	TCNGA	2 cut(s)	960, 1204
Hpy188III	TCNNGA	2 cut(s)	100, 1592
Hpy8I	GTNNAC	7 cut(s)	46, 218, 326, 703, 787, 871, 1059
Hpy99I	CGWCG	1 cut(s)	1236
HpyAV	CCTTC	8 cut(s)	195, 239, 1070, 1137, 1240, 1357, 1476, 1790
HpyCH4III	ACNGT	7 cut(s)	344, 628, 750, 834, 875, 1618, 1665
HpyCH4IV	ACGT	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	8 cut(s)	178, 376, 433, 620, 736, 820, 1237, 1685
HpyF3I	CTNAG	8 cut(s)	618, 966, 1181, 1201, 1269, 1359, 1508, 1815
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	9 cut(s)	161, 172, 193, 214, 311, 377, 1564, 1654, 1714
KspAI	GTTAAC	2 cut(s)	703, 787
Kzo9I	GATC	4 cut(s)	474, 1085, 1414, 1833
LmnI	GCTCC	2 cut(s)	70, 1483
Lsp1109I	GCAGC	5 cut(s)	436, 930, 952, 1530, 1688
LweI	GCATC	2 cut(s)	931, 1675
MabI	ACCWGGT	1 cut(s)	295
MaeI	CTAG	1 cut(s)	1843
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	3 cut(s)	245, 1564, 1700
MalI	GATC	4 cut(s)	476, 1087, 1416, 1835
MboI	GATC	4 cut(s)	474, 1085, 1414, 1833
MfeI	CAATTG	2 cut(s)	89, 886
MflI	RGATCY	1 cut(s)	1085
MmeI	TCCRAC	3 cut(s)	60, 292, 1188
Mph1103I	ATGCAT	1 cut(s)	564
MroXI	GAANNNNTTC	1 cut(s)	1722
MseI	TTAA	5 cut(s)	146, 458, 702, 786, 1626
MslI	CAYNNNNRTG	3 cut(s)	51, 1731, 1752
MspA1I	CMGCKG	2 cut(s)	943, 1123
MspI	CCGG	1 cut(s)	600
MspR9I	CCNGG	2 cut(s)	297, 432
MunI	CAATTG	2 cut(s)	89, 886
Mva1269I	GAATGC	1 cut(s)	676
MvaI	CCWGG	2 cut(s)	297, 432
MwoI	GCNNNNNNNGC	8 cut(s)	178, 376, 433, 620, 736, 820, 1237, 1685
NcoI	CCATGG	1 cut(s)	1710
NdeI	CATATG	2 cut(s)	499, 978
NdeII	GATC	4 cut(s)	474, 1085, 1414, 1833
NlaIII	CATG	9 cut(s)	161, 172, 193, 214, 311, 377, 1564, 1654, 1714
NlaIV	GGNNCC	2 cut(s)	166, 1485
NmuCI	GTSAC	2 cut(s)	1564, 1700
NsiI	ATGCAT	1 cut(s)	564
PaqCI	CACCTGC	1 cut(s)	1537
PctI	GAATGC	1 cut(s)	676
PdmI	GAANNNNTTC	1 cut(s)	1722
PfeI	GAWTC	9 cut(s)	406, 538, 607, 709, 793, 1117, 1252, 1316, 1451
PflMI	CCANNNNNTGG	1 cut(s)	487
PkrI	GCNGC	6 cut(s)	426, 429, 942, 945, 1545, 1678
Psp6I	CCWGG	2 cut(s)	295, 430
PspGI	CCWGG	2 cut(s)	295, 430
PspN4I	GGNNCC	2 cut(s)	166, 1485
PspPI	GGNCC	3 cut(s)	165, 281, 581
PstI	CTGCAG	2 cut(s)	1500, 1548
PsuI	RGATCY	1 cut(s)	1085
PvuII	CAGCTG	1 cut(s)	943
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
RseI	CAYNNNNRTG	3 cut(s)	51, 1731, 1752
SaqAI	TTAA	5 cut(s)	146, 458, 702, 786, 1626
SatI	GCNGC	6 cut(s)	425, 428, 941, 944, 1544, 1677
Sau3AI	GATC	4 cut(s)	474, 1085, 1414, 1833
Sau96I	GGNCC	3 cut(s)	165, 281, 581
ScrFI	CCNGG	2 cut(s)	297, 432
SexAI	ACCWGGT	1 cut(s)	295
SfaNI	GCATC	2 cut(s)	931, 1675
SfcI	CTRYAG	3 cut(s)	624, 1496, 1544
SinI	GGWCC	2 cut(s)	281, 581
SmiMI	CAYNNNNRTG	3 cut(s)	51, 1731, 1752
SsiI	CCGC	5 cut(s)	368, 413, 428, 1071, 1123
SspMI	CTAG	1 cut(s)	1843
StyD4I	CCNGG	2 cut(s)	295, 430
StyI	CCWWGG	2 cut(s)	1066, 1710
TaaI	ACNGT	7 cut(s)	344, 628, 750, 834, 875, 1618, 1665
TaiI	ACGT	1 cut(s)	51
TauI	GCSGC	1 cut(s)	430
TfiI	GAWTC	9 cut(s)	406, 538, 607, 709, 793, 1117, 1252, 1316, 1451
Tru1I	TTAA	5 cut(s)	146, 458, 702, 786, 1626
Tru9I	TTAA	5 cut(s)	146, 458, 702, 786, 1626
TscAI	CASTG	2 cut(s)	865, 1705
TseFI	GTSAC	2 cut(s)	1564, 1700
TseI	GCWGC	5 cut(s)	424, 940, 943, 1543, 1676
Tsp45I	GTSAC	2 cut(s)	1564, 1700
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	2 cut(s)	865, 1705
Van91I	CCANNNNNTGG	1 cut(s)	487
VpaK11BI	GGWCC	2 cut(s)	281, 581
XapI	RAATTY	4 cut(s)	460, 637, 961, 1607
XmnI	GAANNNNTTC	1 cut(s)	1722
XspI	CTAG	1 cut(s)	1843
Zsp2I	ATGCAT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.