Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007326.1

Orthogroup ID

OG0005893

Physical Location & Seq

Genomic Coordinates Forward (+)

193 .. 6159

Gene Structure 5967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007326.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

atgggacctcagcccggtttcatgaatttatctaacaatcttcttccgatgcaaaataaccatatgcgtgtgcccatgtcgcaatttggtacccttggtccgatatctcaaccaggttatcccagtgttggattttgtggtccacagaataatgcactcaatatgaacttggctgcttcctatccatttaacgggcagttatgcaatatggggcagaatctcaatcaagtaaatcaaaatatgggttttctacctggtcaattgtttggacagaacctgttgaatttacagctgatgaatcaaaatattgggccatatgggcaattctgttctccgaatctgttgaataggaatcaggttgtgccagtgcaaatgcaaatgcaaaacccttgccaaggtggtcctaattatgcatttggggggtcaaatcaagcacctcaggctgcagttctgcaaaatcctgctttttttgcaactcctaattctggtaatgtgcactctccaaatcaggccggacaacaaatcaaccagaatcagcaaaacaacgtcttccgatggacacagggaaatcatataaaagctggtggcgtttacaattcgaattctgacagaaaaacttcgccaagcaaaaattttataaagcatccaaaacgagggttgcaaccgcaagggggatttcagaattctcagtttcatcacatcaaaaatgcaaagggaaagtttgcttttcccaacaggcaaaacagaaaagggctaagcaatgagaaggaaggaaaatctgctcttcccgactctatgaatcaaggcagggaaaggaaaagatctctttctttgtcctatacggaacaagaagttcaactgtggcgtgaaggacgtaggaagaactacccatcaaacaccaacatagagaagaagctaagtgaaaagatgatagactcagaggccattgagagagaggccaaagcacgaagggagcaactcaaggagattcttacaaagcaggctgagatgggagttgaagtcgctgagataccatctcactacctctcagattcagcaaaacaagggaatggaagagaggagaataagtcatggactgacaatcggagatcacaaaacaagttcggtaagagagacagatatgataaggaccggtttgcaaagaggcaaagatcaggtcagaaggattcatctaatgacccttcattcagcaaaagggagccaaccttactgcagaaacttcttagttcagatatcaagagagataaaagtcacttatgccaggtgtttaggttcatggtgacaaactctttctttaaagattttcctgacaaacctttgaaatttcctactgtagtagttaaagaaagcgtggtggaggaaggtgtggttgaagagtcttcagttgccgggaaaggtgcttatgggggccgtgacaagtccatgtttgaaaaagttggtaacaatgattataaagattgttgtcacaatgacgattgtgttgaagatgaggaagaagagggagagatcaacatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

NUFIP1

Protein Analysis

512

Amino Acids

57.64

Weight (kDa)

9.32

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18440 AT5G18440
fragaria_vesca	FvH4_1g30390 FvH4_1g30390 FvH4_1g30390 FvH4_1g30390
malus_domestica	MD02G1263300.v1.1 MD07G1054700.v1.1
prunus_persica	Prupe.2G061400_v2.0.a1 Prupe.2G061400_v2.0.a1 Prupe.2G061400_v2.0.a1 Prupe.2G061400_v2.0.a1
pyrus_communis	pycom02g22570 pycom07g04250
rosa_chinensis	RchiOBHm_Chr3g0490591
rosa_laevigata	RLG00000022881
rosa_multiflora	Rmu_sc0007326.1_g000001 Rmu_sc0035249.1_g000001
rosa_roxburghii	Rroxscaffold_6G00393380
rosa_rugosa	Rorug03G0244300 Rorug03G0244400 Rorug03G0244500 Rorug03G0244600
rosa_samantha	Rh3AG294000 Rh3BG330200 Rh3CG327600 Rh3DG326900
rosa_wichuraiana	Rw3G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	638, 1473
Acc65I	GGTACC	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	1 cut(s)	665
AcsI	RAATTY	6 cut(s)	25, 283, 601, 631, 682, 1343
AcuI	CTGAAG	1 cut(s)	1386
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	7 cut(s)	14, 128, 191, 395, 485, 653, 671
AgeI	ACCGGT	1 cut(s)	1152
AgsI	TTSAA	8 cut(s)	283, 346, 857, 1019, 1342, 1394, 1451, 1505
AjnI	CCWGG	3 cut(s)	112, 253, 1281
AluBI	AGCT	3 cut(s)	292, 581, 916
AluI	AGCT	3 cut(s)	292, 581, 916
Alw21I	GWGCWC	1 cut(s)	498
Alw26I	GTCTC	1 cut(s)	1128
Alw44I	GTGCAC	1 cut(s)	494
AlwNI	CAGNNNCTG	1 cut(s)	277
AoxI	GGCC	5 cut(s)	311, 510, 942, 957, 1429
ApaLI	GTGCAC	1 cut(s)	494
ApeKI	GCWGC	2 cut(s)	173, 443
ApoI	RAATTY	6 cut(s)	25, 283, 601, 631, 682, 1343
ArsI	GACNNNNNNTTYG	2 cut(s)	1162, 1194
AsiGI	ACCGGT	1 cut(s)	1152
Asp700I	GAANNNNTTC	1 cut(s)	616
Asp718I	GGTACC	1 cut(s)	89
AspS9I	GGNCC	7 cut(s)	5, 98, 140, 311, 401, 1150, 1429
AsuC2I	CCSGG	2 cut(s)	15, 1411
AsuHPI	GGTGA	1 cut(s)	1312
AsuII	TTCGAA	1 cut(s)	599
AvaII	GGWCC	5 cut(s)	5, 98, 140, 401, 1150
AxyI	CCTNAGG	1 cut(s)	438
BaeGI	GKGCMC	2 cut(s)	75, 498
BanI	GGYRCC	1 cut(s)	89
BbsI	GAAGAC	2 cut(s)	541, 1392
Bbv12I	GWGCWC	1 cut(s)	498
BbvCI	CCTCAGC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	160, 430
BccI	CCATC	4 cut(s)	549, 898, 1003, 1042
BceAI	ACGGC	1 cut(s)	1416
BciT130I	CCWGG	3 cut(s)	114, 255, 1283
BcnI	CCSGG	2 cut(s)	15, 1411
BcoDI	GTCTC	1 cut(s)	1128
BfaI	CTAG	1 cut(s)	1537
BfmI	CTRYAG	3 cut(s)	444, 1232, 1353
BglI	GCCNNNNNGGC	1 cut(s)	319
BglII	AGATCT	1 cut(s)	821
BisI	GCNGC	2 cut(s)	174, 444
BlpI	GCTNAGC	1 cut(s)	755
BlsI	GCNGC	2 cut(s)	175, 445
Bme1390I	CCNGG	5 cut(s)	15, 114, 255, 1283, 1411
Bme18I	GGWCC	5 cut(s)	5, 98, 140, 401, 1150
BmgT120I	GGNCC	7 cut(s)	5, 98, 140, 311, 401, 1150, 1429
BmiI	GGNNCC	4 cut(s)	6, 91, 1221, 1430
BmrFI	CCNGG	5 cut(s)	15, 114, 255, 1283, 1411
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	2 cut(s)	39, 652
BmuI	ACTGGG	1 cut(s)	117
BpiI	GAAGAC	2 cut(s)	541, 1392
Bpu10I	CCTNAGC	1 cut(s)	9
Bpu1102I	GCTNAGC	1 cut(s)	755
Bpu14I	TTCGAA	1 cut(s)	599
BpuEI	CTTGAG	1 cut(s)	965
BpuMI	CCSGG	2 cut(s)	15, 1411
BsaBI	GATNNNNATC	1 cut(s)	1532
BsaJI	CCNNGG	2 cut(s)	94, 394
BsaWI	WCCGGW	1 cut(s)	1152
BsaXI	ACNNNNNCTCC	4 cut(s)	1005, 1035, 1073, 1103
Bsc4I	CCNNNNNNNGG	7 cut(s)	14, 128, 191, 395, 485, 653, 671
Bse118I	RCCGGY	1 cut(s)	1152
Bse1I	ACTGG	2 cut(s)	123, 365
Bse21I	CCTNAGG	1 cut(s)	438
Bse3DI	GCAATG	1 cut(s)	766
Bse8I	GATNNNNATC	1 cut(s)	1532
BseBI	CCWGG	3 cut(s)	114, 255, 1283
BseDI	CCNNGG	2 cut(s)	94, 394
BseGI	GGATG	1 cut(s)	643
BseJI	GATNNNNATC	1 cut(s)	1532
BseLI	CCNNNNNNNGG	7 cut(s)	14, 128, 191, 395, 485, 653, 671
BseMI	GCAATG	1 cut(s)	766
BseMII	CTCAG	7 cut(s)	23, 452, 701, 951, 996, 1017, 1062
BseNI	ACTGG	2 cut(s)	123, 365
BseRI	GAGGAG	1 cut(s)	1094
BseSI	GKGCMC	2 cut(s)	75, 498
BseXI	GCAGC	2 cut(s)	160, 430
BshFI	GGCC	5 cut(s)	313, 512, 944, 959, 1431
BshNI	GGYRCC	1 cut(s)	89
BshTI	ACCGGT	1 cut(s)	1152
BsiHKAI	GWGCWC	1 cut(s)	498
BsiSI	CCGG	4 cut(s)	15, 513, 1153, 1410
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	7 cut(s)	14, 128, 191, 395, 485, 653, 671
BsmAI	GTCTC	1 cut(s)	1128
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	5 cut(s)	313, 512, 944, 959, 1431
Bsp119I	TTCGAA	1 cut(s)	599
Bsp1286I	GDGCHC	2 cut(s)	75, 498
Bsp143I	GATC	4 cut(s)	821, 1109, 1172, 1527
Bsp1720I	GCTNAGC	1 cut(s)	755
BspACI	CCGC	1 cut(s)	665
BspANI	GGCC	5 cut(s)	313, 512, 944, 959, 1431
BspCNI	CTCAG	7 cut(s)	22, 451, 700, 950, 997, 1018, 1061
BspHI	TCATGA	1 cut(s)	21
BspLI	GGNNCC	4 cut(s)	6, 91, 1221, 1430
BspMAI	CTGCAG	2 cut(s)	448, 1236
BspQI	GCTCTTC	1 cut(s)	789
BspT104I	TTCGAA	1 cut(s)	599
BspT107I	GGYRCC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	766
BsrFI	RCCGGY	1 cut(s)	1152
BsrI	ACTGG	2 cut(s)	123, 365
BssAI	RCCGGY	1 cut(s)	1152
BssECI	CCNNGG	2 cut(s)	94, 394
BssMI	GATC	4 cut(s)	821, 1109, 1172, 1527
BssT1I	CCWWGG	2 cut(s)	94, 394
Bst2UI	CCWGG	3 cut(s)	114, 255, 1283
Bst4CI	ACNGT	2 cut(s)	861, 1354
Bst6I	CTCTTC	4 cut(s)	789, 1069, 1389, 1512
BstBI	TTCGAA	1 cut(s)	599
BstC8I	GCNNGC	1 cut(s)	1002
BstENI	CCTNNNNNAGG	1 cut(s)	393
BstF5I	GGATG	1 cut(s)	643
BstKTI	GATC	4 cut(s)	824, 1112, 1175, 1530
BstMAI	GTCTC	1 cut(s)	1128
BstMBI	GATC	4 cut(s)	821, 1109, 1172, 1527
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 319, 440, 470
BstNI	CCWGG	3 cut(s)	114, 255, 1283
BstSCI	CCNGG	5 cut(s)	13, 112, 253, 1281, 1409
BstSFI	CTRYAG	3 cut(s)	444, 1232, 1353
BstSLI	GKGCMC	2 cut(s)	75, 498
BstV1I	GCAGC	2 cut(s)	160, 430
BstV2I	GAAGAC	2 cut(s)	541, 1392
BstX2I	RGATCY	1 cut(s)	821
BstYI	RGATCY	1 cut(s)	821
Bsu36I	CCTNAGG	1 cut(s)	438
BsuRI	GGCC	5 cut(s)	313, 512, 944, 959, 1431
BtsCI	GGATG	1 cut(s)	643
BtsIMutI	CAGTG	2 cut(s)	130, 372
Cac8I	GCNNGC	1 cut(s)	1002
CaiI	CAGNNNCTG	1 cut(s)	277
CciI	TCATGA	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	1152
Cfr13I	GGNCC	7 cut(s)	5, 98, 140, 311, 401, 1150, 1429
CsiI	ACCWGGT	2 cut(s)	112, 253
Csp6I	GTAC	1 cut(s)	90
CspAI	ACCGGT	1 cut(s)	1152
CviAII	CATG	5 cut(s)	22, 76, 1092, 1297, 1444
CviQI	GTAC	1 cut(s)	90
DpnI	GATC	4 cut(s)	823, 1111, 1174, 1529
DpnII	GATC	4 cut(s)	821, 1109, 1172, 1527
DraI	TTTAAA	1 cut(s)	1318
Eam1104I	CTCTTC	4 cut(s)	789, 1069, 1389, 1512
EarI	CTCTTC	4 cut(s)	789, 1069, 1389, 1512
Eco130I	CCWWGG	2 cut(s)	94, 394
Eco32I	GATATC	2 cut(s)	105, 1255
Eco47I	GGWCC	5 cut(s)	5, 98, 140, 401, 1150
Eco57I	CTGAAG	1 cut(s)	1386
Eco81I	CCTNAGG	1 cut(s)	438
EcoNI	CCTNNNNNAGG	1 cut(s)	393
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRI	GAATTC	2 cut(s)	601, 682
EcoRII	CCWGG	3 cut(s)	112, 253, 1281
EcoRV	GATATC	2 cut(s)	105, 1255
EcoT14I	CCWWGG	2 cut(s)	94, 394
EcoT22I	ATGCAT	1 cut(s)	415
ErhI	CCWWGG	2 cut(s)	94, 394
FaeI	CATG	5 cut(s)	25, 79, 1095, 1300, 1447
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	5 cut(s)	21, 75, 1091, 1296, 1443
FauNDI	CATATG	2 cut(s)	63, 316
Fnu4HI	GCNGC	2 cut(s)	174, 444
FokI	GGATG	1 cut(s)	630
Fsp4HI	GCNGC	2 cut(s)	174, 444
FspBI	CTAG	1 cut(s)	1537
GluI	GCNGC	2 cut(s)	174, 444
HaeIII	GGCC	5 cut(s)	313, 512, 944, 959, 1431
HapII	CCGG	4 cut(s)	15, 513, 1153, 1410
Hin1II	CATG	5 cut(s)	25, 79, 1095, 1300, 1447
HpaII	CCGG	4 cut(s)	15, 513, 1153, 1410
HphI	GGTGA	1 cut(s)	1312
Hpy166II	GTNNAC	3 cut(s)	143, 496, 592
Hpy188III	TCNNGA	4 cut(s)	22, 788, 1258, 1328
Hpy8I	GTNNAC	3 cut(s)	143, 496, 592
HpyAV	CCTTC	7 cut(s)	760, 764, 863, 963, 1177, 1212, 1376
HpyCH4III	ACNGT	2 cut(s)	861, 1354
HpyCH4IV	ACGT	2 cut(s)	546, 874
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 319, 440, 470
HpySE526I	ACGT	2 cut(s)	546, 874
Hsp92II	CATG	5 cut(s)	25, 79, 1095, 1300, 1447
KpnI	GGTACC	1 cut(s)	93
Kzo9I	GATC	4 cut(s)	821, 1109, 1172, 1527
LguI	GCTCTTC	1 cut(s)	789
LmnI	GCTCC	2 cut(s)	973, 1219
Lsp1109I	GCAGC	2 cut(s)	160, 430
LweI	GCATC	2 cut(s)	39, 652
MabI	ACCWGGT	2 cut(s)	112, 253
MaeI	CTAG	1 cut(s)	1537
MaeII	ACGT	2 cut(s)	546, 874
MaeIII	GTNAC	5 cut(s)	1271, 1300, 1433, 1460, 1484
MalI	GATC	4 cut(s)	823, 1111, 1174, 1529
MboI	GATC	4 cut(s)	821, 1109, 1172, 1527
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	1 cut(s)	821
MhlI	GDGCHC	2 cut(s)	75, 498
MlyI	GAGTC	3 cut(s)	785, 929, 1406
MmeI	TCCRAC	1 cut(s)	109
Mph1103I	ATGCAT	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	616
MseI	TTAA	3 cut(s)	189, 1317, 1362
MslI	CAYNNNNRTG	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	292
MspI	CCGG	4 cut(s)	15, 513, 1153, 1410
MspR9I	CCNGG	5 cut(s)	15, 114, 255, 1283, 1411
MunI	CAATTG	1 cut(s)	260
MvaI	CCWGG	3 cut(s)	114, 255, 1283
MwoI	GCNNNNNNNGC	4 cut(s)	79, 319, 440, 470
NciI	CCSGG	2 cut(s)	15, 1411
NdeI	CATATG	2 cut(s)	63, 316
NdeII	GATC	4 cut(s)	821, 1109, 1172, 1527
NlaIII	CATG	5 cut(s)	25, 79, 1095, 1300, 1447
NlaIV	GGNNCC	4 cut(s)	6, 91, 1221, 1430
NmuCI	GTSAC	4 cut(s)	1271, 1300, 1433, 1484
NsiI	ATGCAT	1 cut(s)	415
NspV	TTCGAA	1 cut(s)	599
PagI	TCATGA	1 cut(s)	21
PciSI	GCTCTTC	1 cut(s)	789
PdmI	GAANNNNTTC	1 cut(s)	616
PfeI	GAWTC	9 cut(s)	217, 298, 337, 352, 532, 799, 988, 1052, 1187
PinAI	ACCGGT	1 cut(s)	1152
PkrI	GCNGC	2 cut(s)	175, 445
PleI	GAGTC	3 cut(s)	785, 929, 1405
PpsI	GAGTC	3 cut(s)	785, 929, 1405
PpuMI	RGGWCCY	1 cut(s)	5
PsiI	TTATAA	2 cut(s)	638, 1473
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	3 cut(s)	112, 253, 1281
PspGI	CCWGG	3 cut(s)	112, 253, 1281
PspN4I	GGNNCC	4 cut(s)	6, 91, 1221, 1430
PspPI	GGNCC	7 cut(s)	5, 98, 140, 311, 401, 1150, 1429
PspPPI	RGGWCCY	1 cut(s)	5
PstI	CTGCAG	2 cut(s)	448, 1236
PstNI	CAGNNNCTG	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	821
PvuII	CAGCTG	1 cut(s)	292
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	66
SapI	GCTCTTC	1 cut(s)	789
SaqAI	TTAA	3 cut(s)	189, 1317, 1362
SatI	GCNGC	2 cut(s)	174, 444
Sau3AI	GATC	4 cut(s)	821, 1109, 1172, 1527
Sau96I	GGNCC	7 cut(s)	5, 98, 140, 311, 401, 1150, 1429
SchI	GAGTC	3 cut(s)	785, 929, 1406
ScrFI	CCNGG	5 cut(s)	15, 114, 255, 1283, 1411
SduI	GDGCHC	2 cut(s)	75, 498
SexAI	ACCWGGT	2 cut(s)	112, 253
SfaNI	GCATC	2 cut(s)	39, 652
SfcI	CTRYAG	3 cut(s)	444, 1232, 1353
SfuI	TTCGAA	1 cut(s)	599
SinI	GGWCC	5 cut(s)	5, 98, 140, 401, 1150
SmiMI	CAYNNNNRTG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	980
SmoI	CTYRAG	1 cut(s)	980
SsiI	CCGC	1 cut(s)	665
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	1 cut(s)	1537
StyD4I	CCNGG	5 cut(s)	13, 112, 253, 1281, 1409
StyI	CCWWGG	2 cut(s)	94, 394
TaaI	ACNGT	2 cut(s)	861, 1354
TaiI	ACGT	2 cut(s)	549, 877
TaqI	TCGA	1 cut(s)	599
TfiI	GAWTC	9 cut(s)	217, 298, 337, 352, 532, 799, 988, 1052, 1187
Tru1I	TTAA	3 cut(s)	189, 1317, 1362
Tru9I	TTAA	3 cut(s)	189, 1317, 1362
TscAI	CASTG	2 cut(s)	130, 372
TseFI	GTSAC	4 cut(s)	1271, 1300, 1433, 1484
TseI	GCWGC	2 cut(s)	173, 443
Tsp45I	GTSAC	4 cut(s)	1271, 1300, 1433, 1484
TspDTI	ATGAA	9 cut(s)	10, 38, 179, 311, 683, 812, 1179, 1194, 1285
TspGWI	ACGGA	1 cut(s)	857
TspRI	CASTG	2 cut(s)	130, 372
VneI	GTGCAC	1 cut(s)	494
VpaK11BI	GGWCC	5 cut(s)	5, 98, 140, 401, 1150
XagI	CCTNNNNNAGG	1 cut(s)	393
XapI	RAATTY	6 cut(s)	25, 283, 601, 631, 682, 1343
XmnI	GAANNNNTTC	1 cut(s)	616
XspI	CTAG	1 cut(s)	1537
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.