Rh3BG330200

Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0005893
Physical Location & Seq
Forward (+)
34517254 .. 34523240
5987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG330200.1

Sequence Viewer

Length: 1692 bp
ATGTTACCTCACTATAATTCCTTTCACCAAAATTCCGGCCAAGCTCACCCGGCCGGCGGTAATGGTGGTAGCTCTGCTCCATCTTCTCAACAGCAGCAGGGTATGCCATTTAATCCATCGCATGCAAATTCATGTAATATGTTGCCACCTTCGATGGGACCTCAGCCCGGTTTCATGAATTTATCTAACAACCTTCTTCCGATGCAAAATAACCATATGCGTGTGCCCATGTCGCAATTTGGTTCCCTTGGTCCCATATCTCAACCAGGTTATCCTAGTGTTGGATTTTTTGGTCCACAGAATAATGCACTCAATATGAACTTGGCTGCTTCCTATCCATTTAACGGGCAGTTATGCAATATGGGGCAGAATCTCAATCAAGTAAATCAAAATATGGGTTTTCTACCTGGTCAATTGTTTGGACATAACCTGTTGAATTTACAGCAGATGAATCAAAATATTGGGCCATATGGGCAATTCTGTTCGCCGAATCTGTTGAATGGGAATCAGGTTGTGCCAATGCAAATACAAATGCAAAACCCTTGCCAAGGTGGTCCTAATTATGCATTTGGAGGATCAAATCATGCACCTCAGGCTGCAGTTCTGCAAAATCCTGCTTTTTCGGCAACTCCTAATTCTGGTAATGTGCACTCTCCAAATCAGGCAGGACAACAAATCAACCAGAATCAGCAAAACAACGTCTTCCGAGGGACACAGGGAAATCATATAAAAGCTGGTGGCGTTTACAATTCAAATTCTGACAGGAAAACTTCGACAAGCAAAAGTTTTATAAAGCATCCAAAACGAGGGTTACAGCCGCAAGGGGGATTTCAGAATTCTCAGTTTCATCATATCAAAAATGCAAAGGGAAAGTTTGGTAATAGGCAAAACAGAAAAGGGCTAAGCAATGAGAAGGAAGGAAAATCTGCTCTTGCCGGCTCTATGAATCAAGGAAGGGAAAGGAAAAGATCTCTTTCTTTGTCCTATACGGAACAAGAAGTTCAACTGTGGCGTGAAGGACGTAGGAAGAACTATCCATCAAACACCAACATAGAGAAGAAGCTAAGTGAAAAGACAATACACTCGGAGGCCATTGAGAGAGAGGCCAAAGCACGAAGGGAGCAACTCAAGGAGATTCTTACAAAGCAGGCTGAGATGGGAGTTGAAGTCGCTGAGATACCATCTCACTACCTCTCAGATTCAGAAAAACAAGGGAATGGAAGAGAGGAGAATAAGTCATGGACTAACAATCGGAGATCACAAAACAAGTTCGTTAAGAGAGACAGATACGATAAGAAGGACCGGTTTGCAAAGAGGCAAAGATCAAGTCAGAAGGATTCATCTAATGACCCTTCATTCAACCAAAGGGAGCCAACCTTACTGCAGAAGCTTCTTAGTTCAGATATCAAGAGAGATAAAAGTCGATTATGCCAGGTGTTTAGGTTCATGGTGACAAACTCTTTCTTTAAAGATTTTCCTGACAAACCTTTGAAATTTCCTACTGTAGTAGTTAAAGAAAGTGTGGTGGAGGAAGGTGTGGTTGAAGAGTTGTCTTCAGTTGCCGGGAAAGGTGCTTATGGGGGCCGTGACAAGTCCACGTTTGAAAAAGTTGGTAACAATGATTATAAAGATTGTTGTTACAATGATGATCATGTTGAAGATGAGGAAGAAGAGGGAGAGATCATCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 ko05164 map03015 map05164
Pfam Domains
Protein Families
NUFIP1

Protein Analysis

563

Amino Acids

62.77

Weight (kDa)

9.43

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUFIP1 PF10453 326 - 358 2e-08 FMR1-interacting protein 1 (NUFIP1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 791, 1626
AciI CCGC 2 cut(s) 57, 818
AclWI GGATC 1 cut(s) 583
AcoI YGGCCR 2 cut(s) 37, 51
AcsI RAATTY 7 cut(s) 31, 127, 178, 436, 754, 835, 1493
AcuI CTGAAG 1 cut(s) 1539
AfiI CCNNNNNNNGG 9 cut(s) 56, 155, 167, 281, 344, 548, 638, 806, 824
AgeI ACCGGT 1 cut(s) 1302
AjnI CCWGG 3 cut(s) 265, 406, 1431
AluBI AGCT 5 cut(s) 44, 72, 734, 1063, 1390
AluI AGCT 5 cut(s) 44, 72, 734, 1063, 1390
Alw21I GWGCWC 1 cut(s) 651
Alw26I GTCTC 1 cut(s) 1275
Alw44I GTGCAC 1 cut(s) 647
AlwI GGATC 1 cut(s) 583
AoxI GGCC 6 cut(s) 37, 51, 464, 1089, 1104, 1582
ApaLI GTGCAC 1 cut(s) 647
ApeKI GCWGC 3 cut(s) 94, 326, 596
ApoI RAATTY 7 cut(s) 31, 127, 178, 436, 754, 835, 1493
ArsI GACNNNNNNTTYG 2 cut(s) 1312, 1344
AsiGI ACCGGT 1 cut(s) 1302
AspS9I GGNCC 7 cut(s) 158, 251, 293, 464, 554, 1300, 1582
AsuC2I CCSGG 3 cut(s) 50, 168, 1564
AsuHPI GGTGA 3 cut(s) 17, 38, 1462
AvaII GGWCC 5 cut(s) 158, 251, 293, 554, 1300
AxyI CCTNAGG 1 cut(s) 591
BaeGI GKGCMC 2 cut(s) 228, 651
BbsI GAAGAC 2 cut(s) 694, 1545
Bbv12I GWGCWC 1 cut(s) 651
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 3 cut(s) 106, 313, 583
BccI CCATC 6 cut(s) 88, 124, 148, 1045, 1150, 1189
BceAI ACGGC 1 cut(s) 1569
BciT130I CCWGG 3 cut(s) 267, 408, 1433
BclI TGATCA 1 cut(s) 1648
BcnI CCSGG 3 cut(s) 50, 168, 1564
BcoDI GTCTC 1 cut(s) 1275
BfaI CTAG 2 cut(s) 276, 1690
BfmI CTRYAG 3 cut(s) 597, 1382, 1503
BglI GCCNNNNNGGC 1 cut(s) 472
BglII AGATCT 1 cut(s) 968
BisI GCNGC 4 cut(s) 95, 327, 597, 818
BlpI GCTNAGC 1 cut(s) 902
BlsI GCNGC 4 cut(s) 96, 328, 598, 819
Bme1390I CCNGG 6 cut(s) 50, 168, 267, 408, 1433, 1564
Bme18I GGWCC 5 cut(s) 158, 251, 293, 554, 1300
BmgT120I GGNCC 7 cut(s) 158, 251, 293, 464, 554, 1300, 1582
BmiI GGNNCC 5 cut(s) 159, 244, 253, 1371, 1583
BmrFI CCNGG 6 cut(s) 50, 168, 267, 408, 1433, 1564
BmsI GCATC 2 cut(s) 192, 805
BpiI GAAGAC 2 cut(s) 694, 1545
Bpu10I CCTNAGC 1 cut(s) 162
Bpu1102I GCTNAGC 1 cut(s) 902
BpuEI CTTGAG 1 cut(s) 1112
BpuMI CCSGG 3 cut(s) 50, 168, 1564
BsaJI CCNNGG 3 cut(s) 247, 547, 706
BsaWI WCCGGW 1 cut(s) 1302
BsaXI ACNNNNNCTCC 4 cut(s) 1152, 1182, 1220, 1250
Bsc4I CCNNNNNNNGG 9 cut(s) 56, 155, 167, 281, 344, 548, 638, 806, 824
Bse118I RCCGGY 3 cut(s) 53, 935, 1302
Bse21I CCTNAGG 1 cut(s) 591
Bse3DI GCAATG 1 cut(s) 913
BseBI CCWGG 3 cut(s) 267, 408, 1433
BseDI CCNNGG 3 cut(s) 247, 547, 706
BseGI GGATG 1 cut(s) 796
BseLI CCNNNNNNNGG 9 cut(s) 56, 155, 167, 281, 344, 548, 638, 806, 824
BseMI GCAATG 1 cut(s) 913
BseMII CTCAG 6 cut(s) 176, 605, 854, 1143, 1164, 1209
BseRI GAGGAG 1 cut(s) 1241
BseSI GKGCMC 2 cut(s) 228, 651
BseX3I CGGCCG 1 cut(s) 51
BseXI GCAGC 3 cut(s) 106, 313, 583
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 6 cut(s) 39, 53, 466, 1091, 1106, 1584
BshTI ACCGGT 1 cut(s) 1302
BsiEI CGRYCG 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 651
BsiSI CCGG 7 cut(s) 36, 50, 54, 168, 936, 1303, 1563
BslFI GGGAC 3 cut(s) 171, 237, 724
BslI CCNNNNNNNGG 9 cut(s) 56, 155, 167, 281, 344, 548, 638, 806, 824
BsmAI GTCTC 1 cut(s) 1275
BsmFI GGGAC 3 cut(s) 171, 237, 724
BsnI GGCC 6 cut(s) 39, 53, 466, 1091, 1106, 1584
Bsp1286I GDGCHC 2 cut(s) 228, 651
Bsp143I GATC 6 cut(s) 575, 968, 1256, 1322, 1648, 1680
Bsp1720I GCTNAGC 1 cut(s) 902
BspACI CCGC 2 cut(s) 57, 818
BspANI GGCC 6 cut(s) 39, 53, 466, 1091, 1106, 1584
BspCNI CTCAG 6 cut(s) 175, 604, 853, 1144, 1165, 1208
BspHI TCATGA 1 cut(s) 174
BspLI GGNNCC 5 cut(s) 159, 244, 253, 1371, 1583
BspMAI CTGCAG 2 cut(s) 601, 1386
BspPI GGATC 1 cut(s) 583
BsrDI GCAATG 1 cut(s) 913
BsrFI RCCGGY 3 cut(s) 53, 935, 1302
BssAI RCCGGY 3 cut(s) 53, 935, 1302
BssECI CCNNGG 3 cut(s) 247, 547, 706
BssMI GATC 6 cut(s) 575, 968, 1256, 1322, 1648, 1680
BssT1I CCWWGG 2 cut(s) 247, 547
Bst2UI CCWGG 3 cut(s) 267, 408, 1433
Bst4CI ACNGT 2 cut(s) 1008, 1504
Bst6I CTCTTC 3 cut(s) 1216, 1539, 1665
BstAPI GCANNNNNTGC 1 cut(s) 103
BstC8I GCNNGC 4 cut(s) 55, 123, 937, 1149
BstDEI CTNAG 9 cut(s) 162, 591, 840, 902, 1064, 1152, 1173, 1195, 1394
BstENI CCTNNNNNAGG 1 cut(s) 546
BstF5I GGATG 1 cut(s) 796
BstKTI GATC 6 cut(s) 578, 971, 1259, 1325, 1651, 1683
BstMAI GTCTC 1 cut(s) 1275
BstMBI GATC 6 cut(s) 575, 968, 1256, 1322, 1648, 1680
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 6 cut(s) 50, 103, 232, 472, 593, 623
BstNI CCWGG 3 cut(s) 267, 408, 1433
BstNSI RCATGY 1 cut(s) 125
BstSCI CCNGG 6 cut(s) 48, 166, 265, 406, 1431, 1562
BstSFI CTRYAG 3 cut(s) 597, 1382, 1503
BstSLI GKGCMC 2 cut(s) 228, 651
BstV1I GCAGC 3 cut(s) 106, 313, 583
BstV2I GAAGAC 2 cut(s) 694, 1545
BstX2I RGATCY 1 cut(s) 968
BstYI RGATCY 1 cut(s) 968
BstZI CGGCCG 1 cut(s) 51
Bsu36I CCTNAGG 1 cut(s) 591
BsuRI GGCC 6 cut(s) 39, 53, 466, 1091, 1106, 1584
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 1 cut(s) 796
Cac8I GCNNGC 4 cut(s) 55, 123, 937, 1149
CciI TCATGA 1 cut(s) 174
Cfr10I RCCGGY 3 cut(s) 53, 935, 1302
Cfr13I GGNCC 7 cut(s) 158, 251, 293, 464, 554, 1300, 1582
CsiI ACCWGGT 2 cut(s) 265, 406
CspAI ACCGGT 1 cut(s) 1302
CviAII CATG 8 cut(s) 122, 132, 175, 229, 584, 1239, 1447, 1652
DdeI CTNAG 9 cut(s) 162, 591, 840, 902, 1064, 1152, 1173, 1195, 1394
DpnI GATC 6 cut(s) 577, 970, 1258, 1324, 1650, 1682
DpnII GATC 6 cut(s) 575, 968, 1256, 1322, 1648, 1680
DraI TTTAAA 1 cut(s) 1468
EaeI YGGCCR 2 cut(s) 37, 51
EagI CGGCCG 1 cut(s) 51
Eam1104I CTCTTC 3 cut(s) 1216, 1539, 1665
EarI CTCTTC 3 cut(s) 1216, 1539, 1665
EclXI CGGCCG 1 cut(s) 51
Eco130I CCWWGG 2 cut(s) 247, 547
Eco32I GATATC 1 cut(s) 1405
Eco47I GGWCC 5 cut(s) 158, 251, 293, 554, 1300
Eco52I CGGCCG 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 1539
Eco81I CCTNAGG 1 cut(s) 591
EcoNI CCTNNNNNAGG 1 cut(s) 546
EcoO109I RGGNCCY 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 835
EcoRII CCWGG 3 cut(s) 265, 406, 1431
EcoRV GATATC 1 cut(s) 1405
EcoT14I CCWWGG 2 cut(s) 247, 547
EcoT22I ATGCAT 1 cut(s) 568
ErhI CCWWGG 2 cut(s) 247, 547
FaeI CATG 8 cut(s) 125, 135, 178, 232, 587, 1242, 1450, 1655
FaqI GGGAC 3 cut(s) 171, 237, 724
FatI CATG 8 cut(s) 121, 131, 174, 228, 583, 1238, 1446, 1651
FauNDI CATATG 2 cut(s) 216, 469
FbaI TGATCA 1 cut(s) 1648
Fnu4HI GCNGC 4 cut(s) 95, 327, 597, 818
FokI GGATG 1 cut(s) 783
Fsp4HI GCNGC 4 cut(s) 95, 327, 597, 818
FspBI CTAG 2 cut(s) 276, 1690
GluI GCNGC 4 cut(s) 95, 327, 597, 818
HaeIII GGCC 6 cut(s) 39, 53, 466, 1091, 1106, 1584
HapII CCGG 7 cut(s) 36, 50, 54, 168, 936, 1303, 1563
Hin1II CATG 8 cut(s) 125, 135, 178, 232, 587, 1242, 1450, 1655
HindIII AAGCTT 1 cut(s) 1388
HinfI GANTC 9 cut(s) 370, 451, 490, 505, 685, 946, 1135, 1199, 1337
HpaII CCGG 7 cut(s) 36, 50, 54, 168, 936, 1303, 1563
HphI GGTGA 3 cut(s) 17, 38, 1462
Hpy166II GTNNAC 4 cut(s) 296, 649, 745, 1596
Hpy188III TCNNGA 3 cut(s) 175, 1408, 1478
Hpy8I GTNNAC 4 cut(s) 296, 649, 745, 1596
HpyCH4III ACNGT 2 cut(s) 1008, 1504
HpyCH4IV ACGT 3 cut(s) 699, 1021, 1598
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 103, 232, 472, 593, 623
HpyF3I CTNAG 9 cut(s) 162, 591, 840, 902, 1064, 1152, 1173, 1195, 1394
HpySE526I ACGT 3 cut(s) 699, 1021, 1598
Hsp92II CATG 8 cut(s) 125, 135, 178, 232, 587, 1242, 1450, 1655
KroI GCCGGC 2 cut(s) 53, 935
KroNI GCCGGC 2 cut(s) 55, 937
Ksp22I TGATCA 1 cut(s) 1648
Kzo9I GATC 6 cut(s) 575, 968, 1256, 1322, 1648, 1680
LmnI GCTCC 3 cut(s) 82, 1120, 1369
Lsp1109I GCAGC 3 cut(s) 106, 313, 583
LweI GCATC 2 cut(s) 192, 805
MabI ACCWGGT 2 cut(s) 265, 406
MaeI CTAG 2 cut(s) 276, 1690
MaeII ACGT 3 cut(s) 699, 1021, 1598
MaeIII GTNAC 6 cut(s) 3, 810, 1450, 1586, 1613, 1637
MalI GATC 6 cut(s) 577, 970, 1258, 1324, 1650, 1682
MboI GATC 6 cut(s) 575, 968, 1256, 1322, 1648, 1680
MfeI CAATTG 1 cut(s) 413
MflI RGATCY 1 cut(s) 968
MhlI GDGCHC 2 cut(s) 228, 651
MmeI TCCRAC 1 cut(s) 262
Mph1103I ATGCAT 1 cut(s) 568
MroNI GCCGGC 2 cut(s) 53, 935
MseI TTAA 5 cut(s) 111, 342, 1275, 1467, 1512
MslI CAYNNNNRTG 1 cut(s) 219
MspI CCGG 7 cut(s) 36, 50, 54, 168, 936, 1303, 1563
MspR9I CCNGG 6 cut(s) 50, 168, 267, 408, 1433, 1564
MunI CAATTG 1 cut(s) 413
MvaI CCWGG 3 cut(s) 267, 408, 1433
MwoI GCNNNNNNNGC 6 cut(s) 50, 103, 232, 472, 593, 623
NaeI GCCGGC 2 cut(s) 55, 937
NciI CCSGG 3 cut(s) 50, 168, 1564
NdeI CATATG 2 cut(s) 216, 469
NdeII GATC 6 cut(s) 575, 968, 1256, 1322, 1648, 1680
NgoMIV GCCGGC 2 cut(s) 53, 935
NlaIII CATG 8 cut(s) 125, 135, 178, 232, 587, 1242, 1450, 1655
NlaIV GGNNCC 5 cut(s) 159, 244, 253, 1371, 1583
NmuCI GTSAC 2 cut(s) 1450, 1586
NsiI ATGCAT 1 cut(s) 568
NspI RCATGY 1 cut(s) 125
PaeI GCATGC 1 cut(s) 125
PagI TCATGA 1 cut(s) 174
PdiI GCCGGC 2 cut(s) 55, 937
PfeI GAWTC 9 cut(s) 370, 451, 490, 505, 685, 946, 1135, 1199, 1337
PinAI ACCGGT 1 cut(s) 1302
PkrI GCNGC 4 cut(s) 96, 328, 598, 819
PpuMI RGGWCCY 1 cut(s) 158
PsiI TTATAA 2 cut(s) 791, 1626
Psp5II RGGWCCY 1 cut(s) 158
Psp6I CCWGG 3 cut(s) 265, 406, 1431
PspGI CCWGG 3 cut(s) 265, 406, 1431
PspN4I GGNNCC 5 cut(s) 159, 244, 253, 1371, 1583
PspPI GGNCC 7 cut(s) 158, 251, 293, 464, 554, 1300, 1582
PspPPI RGGWCCY 1 cut(s) 158
PstI CTGCAG 2 cut(s) 601, 1386
PsuI RGATCY 1 cut(s) 968
RseI CAYNNNNRTG 1 cut(s) 219
SaqAI TTAA 5 cut(s) 111, 342, 1275, 1467, 1512
SatI GCNGC 4 cut(s) 95, 327, 597, 818
Sau3AI GATC 6 cut(s) 575, 968, 1256, 1322, 1648, 1680
Sau96I GGNCC 7 cut(s) 158, 251, 293, 464, 554, 1300, 1582
ScrFI CCNGG 6 cut(s) 50, 168, 267, 408, 1433, 1564
SduI GDGCHC 2 cut(s) 228, 651
SexAI ACCWGGT 2 cut(s) 265, 406
SfaNI GCATC 2 cut(s) 192, 805
SfcI CTRYAG 3 cut(s) 597, 1382, 1503
SinI GGWCC 5 cut(s) 158, 251, 293, 554, 1300
SmiMI CAYNNNNRTG 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 1127
SmoI CTYRAG 1 cut(s) 1127
SphI GCATGC 1 cut(s) 125
SsiI CCGC 2 cut(s) 57, 818
SspI AATATT 1 cut(s) 460
SspMI CTAG 2 cut(s) 276, 1690
StyD4I CCNGG 6 cut(s) 48, 166, 265, 406, 1431, 1562
StyI CCWWGG 2 cut(s) 247, 547
TaaI ACNGT 2 cut(s) 1008, 1504
TaiI ACGT 3 cut(s) 702, 1024, 1601
TaqI TCGA 3 cut(s) 152, 773, 1423
TauI GCSGC 1 cut(s) 820
TfiI GAWTC 9 cut(s) 370, 451, 490, 505, 685, 946, 1135, 1199, 1337
Tru1I TTAA 5 cut(s) 111, 342, 1275, 1467, 1512
Tru9I TTAA 5 cut(s) 111, 342, 1275, 1467, 1512
TseFI GTSAC 2 cut(s) 1450, 1586
TseI GCWGC 3 cut(s) 94, 326, 596
Tsp45I GTSAC 2 cut(s) 1450, 1586
TspGWI ACGGA 1 cut(s) 1004
VneI GTGCAC 1 cut(s) 647
VpaK11BI GGWCC 5 cut(s) 158, 251, 293, 554, 1300
XagI CCTNNNNNAGG 1 cut(s) 546
XapI RAATTY 7 cut(s) 31, 127, 178, 436, 754, 835, 1493
XceI RCATGY 1 cut(s) 125
XspI CTAG 2 cut(s) 276, 1690
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.