Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035249.1

Orthogroup ID

OG0005893

Physical Location & Seq

Genomic Coordinates Forward (+)

193 .. 789

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035249.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgggacctcagcccggtttcatgaatttatctaacaatcttcttccgatgcaaaataaccatatgcgtgtgcccatgtcgcaatttggtacccttggtccgatatctcaaccaggttatcccagtgttggattttgtggtccacagaataatgcactcaatatgaacttggctgcttcctatccatttaacgggcagttatgcaatatggggcagaatctcaatcaagtaaatcaaaatatgggttttctacctggtcaattgtttggacataacctgttgaatttacagctgatgaatcaaaatattgggccatatgggcaattctgttcgccgaatctgttgaataggaatcaggttgtgccagtgcaaatgcaaatgcaaaacgcttgccaaggtggtcctaattatgcatttggggggtcaaatcaagcacctcaggctgcagttctgcaaaatcctgctttttttgcaactcccaattctggtaatgtgcactctccaaatcaggccggacaacaaatcaaccagaatcagcaaaacaacgtcttccgagggacacaggtaccttcatttttccttgtggatatctgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

NUFIP1

Protein Analysis

198

Amino Acids

21.47

Weight (kDa)

8.38

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18440 AT5G18440
fragaria_vesca	FvH4_1g30390 FvH4_1g30390 FvH4_1g30390 FvH4_1g30390
malus_domestica	MD02G1263300.v1.1 MD07G1054700.v1.1
prunus_persica	Prupe.2G061400_v2.0.a1 Prupe.2G061400_v2.0.a1 Prupe.2G061400_v2.0.a1 Prupe.2G061400_v2.0.a1
pyrus_communis	pycom02g22570 pycom07g04250
rosa_chinensis	RchiOBHm_Chr3g0490591
rosa_laevigata	RLG00000022881
rosa_multiflora	Rmu_sc0007326.1_g000001 Rmu_sc0035249.1_g000001
rosa_roxburghii	Rroxscaffold_6G00393380
rosa_rugosa	Rorug03G0244300 Rorug03G0244400 Rorug03G0244500 Rorug03G0244600
rosa_samantha	Rh3AG294000 Rh3BG330200 Rh3CG327600 Rh3DG326900
rosa_wichuraiana	Rw3G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	89, 565
AccB1I	GGYRCC	2 cut(s)	89, 565
AcsI	RAATTY	2 cut(s)	25, 283
AfaI	GTAC	2 cut(s)	91, 567
AfiI	CCNNNNNNNGG	4 cut(s)	14, 128, 191, 485
AgsI	TTSAA	2 cut(s)	283, 346
AjnI	CCWGG	2 cut(s)	112, 253
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Alw21I	GWGCWC	1 cut(s)	498
Alw44I	GTGCAC	1 cut(s)	494
AoxI	GGCC	2 cut(s)	311, 510
ApaLI	GTGCAC	1 cut(s)	494
ApeKI	GCWGC	2 cut(s)	173, 443
ApoI	RAATTY	2 cut(s)	25, 283
Asp718I	GGTACC	2 cut(s)	89, 565
AspS9I	GGNCC	5 cut(s)	5, 98, 140, 311, 401
AsuC2I	CCSGG	1 cut(s)	15
AvaII	GGWCC	4 cut(s)	5, 98, 140, 401
AxyI	CCTNAGG	1 cut(s)	438
BaeGI	GKGCMC	2 cut(s)	75, 498
BaeI	ACNNNNGTAYC	2 cut(s)	549, 582
BanI	GGYRCC	2 cut(s)	89, 565
BbsI	GAAGAC	1 cut(s)	541
Bbv12I	GWGCWC	1 cut(s)	498
BbvCI	CCTCAGC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	160, 430
BciT130I	CCWGG	2 cut(s)	114, 255
BcnI	CCSGG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	444
BglI	GCCNNNNNGGC	1 cut(s)	319
BisI	GCNGC	2 cut(s)	174, 444
BlsI	GCNGC	2 cut(s)	175, 445
Bme1390I	CCNGG	3 cut(s)	15, 114, 255
Bme18I	GGWCC	4 cut(s)	5, 98, 140, 401
BmgT120I	GGNCC	5 cut(s)	5, 98, 140, 311, 401
BmiI	GGNNCC	3 cut(s)	6, 91, 567
BmrFI	CCNGG	3 cut(s)	15, 114, 255
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	39
BmuI	ACTGGG	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	541
Bpu10I	CCTNAGC	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	15
BsaJI	CCNNGG	3 cut(s)	94, 394, 553
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 128, 191, 485
Bse1I	ACTGG	2 cut(s)	123, 365
Bse21I	CCTNAGG	1 cut(s)	438
BseBI	CCWGG	2 cut(s)	114, 255
BseDI	CCNNGG	3 cut(s)	94, 394, 553
BseLI	CCNNNNNNNGG	4 cut(s)	14, 128, 191, 485
BseMII	CTCAG	2 cut(s)	23, 452
BseNI	ACTGG	2 cut(s)	123, 365
BseSI	GKGCMC	2 cut(s)	75, 498
BseXI	GCAGC	2 cut(s)	160, 430
BshFI	GGCC	2 cut(s)	313, 512
BshNI	GGYRCC	2 cut(s)	89, 565
BsiHKAI	GWGCWC	1 cut(s)	498
BsiSI	CCGG	2 cut(s)	15, 513
BslFI	GGGAC	2 cut(s)	18, 571
BslI	CCNNNNNNNGG	4 cut(s)	14, 128, 191, 485
BsmFI	GGGAC	2 cut(s)	18, 571
BsnI	GGCC	2 cut(s)	313, 512
Bsp1286I	GDGCHC	2 cut(s)	75, 498
BspANI	GGCC	2 cut(s)	313, 512
BspCNI	CTCAG	2 cut(s)	22, 451
BspHI	TCATGA	1 cut(s)	21
BspLI	GGNNCC	3 cut(s)	6, 91, 567
BspMAI	CTGCAG	1 cut(s)	448
BspT107I	GGYRCC	2 cut(s)	89, 565
BsrI	ACTGG	2 cut(s)	123, 365
BssECI	CCNNGG	3 cut(s)	94, 394, 553
BssT1I	CCWWGG	2 cut(s)	94, 394
Bst2UI	CCWGG	2 cut(s)	114, 255
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	2 cut(s)	9, 438
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 319, 440, 470
BstNI	CCWGG	2 cut(s)	114, 255
BstSCI	CCNGG	3 cut(s)	13, 112, 253
BstSFI	CTRYAG	1 cut(s)	444
BstSLI	GKGCMC	2 cut(s)	75, 498
BstV1I	GCAGC	2 cut(s)	160, 430
BstV2I	GAAGAC	1 cut(s)	541
Bsu36I	CCTNAGG	1 cut(s)	438
BsuRI	GGCC	2 cut(s)	313, 512
BtsIMutI	CAGTG	2 cut(s)	130, 372
Cac8I	GCNNGC	1 cut(s)	391
CciI	TCATGA	1 cut(s)	21
Cfr13I	GGNCC	5 cut(s)	5, 98, 140, 311, 401
CsiI	ACCWGGT	2 cut(s)	112, 253
Csp6I	GTAC	2 cut(s)	90, 566
CviAII	CATG	2 cut(s)	22, 76
CviJI	RGCY	6 cut(s)	13, 173, 292, 313, 443, 512
CviKI_1	RGCY	6 cut(s)	13, 173, 292, 313, 443, 512
CviQI	GTAC	2 cut(s)	90, 566
DdeI	CTNAG	2 cut(s)	9, 438
Eco130I	CCWWGG	2 cut(s)	94, 394
Eco32I	GATATC	2 cut(s)	105, 589
Eco47I	GGWCC	4 cut(s)	5, 98, 140, 401
Eco81I	CCTNAGG	1 cut(s)	438
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	2 cut(s)	112, 253
EcoRV	GATATC	2 cut(s)	105, 589
EcoT14I	CCWWGG	2 cut(s)	94, 394
EcoT22I	ATGCAT	1 cut(s)	415
ErhI	CCWWGG	2 cut(s)	94, 394
FaeI	CATG	2 cut(s)	25, 79
FaqI	GGGAC	2 cut(s)	18, 571
FatI	CATG	2 cut(s)	21, 75
FauNDI	CATATG	2 cut(s)	63, 316
Fnu4HI	GCNGC	2 cut(s)	174, 444
Fsp4HI	GCNGC	2 cut(s)	174, 444
GluI	GCNGC	2 cut(s)	174, 444
HaeIII	GGCC	2 cut(s)	313, 512
HapII	CCGG	2 cut(s)	15, 513
Hin1II	CATG	2 cut(s)	25, 79
HinfI	GANTC	5 cut(s)	217, 298, 337, 352, 532
HpaII	CCGG	2 cut(s)	15, 513
Hpy166II	GTNNAC	2 cut(s)	143, 496
Hpy188I	TCNGA	3 cut(s)	48, 102, 554
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	2 cut(s)	143, 496
HpyAV	CCTTC	1 cut(s)	579
HpyCH4IV	ACGT	1 cut(s)	546
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 319, 440, 470
HpyF3I	CTNAG	2 cut(s)	9, 438
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	2 cut(s)	25, 79
KpnI	GGTACC	2 cut(s)	93, 569
Lsp1109I	GCAGC	2 cut(s)	160, 430
LweI	GCATC	1 cut(s)	39
MabI	ACCWGGT	2 cut(s)	112, 253
MaeII	ACGT	1 cut(s)	546
MboII	GAAGA	3 cut(s)	32, 35, 541
MfeI	CAATTG	1 cut(s)	260
MhlI	GDGCHC	2 cut(s)	75, 498
MluCI	AATT	7 cut(s)	25, 83, 260, 283, 323, 406, 481
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	3 cut(s)	18, 447, 548
Mph1103I	ATGCAT	1 cut(s)	415
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	66
MspA1I	CMGCKG	1 cut(s)	292
MspI	CCGG	2 cut(s)	15, 513
MspR9I	CCNGG	3 cut(s)	15, 114, 255
MunI	CAATTG	1 cut(s)	260
MvaI	CCWGG	2 cut(s)	114, 255
MwoI	GCNNNNNNNGC	4 cut(s)	79, 319, 440, 470
NciI	CCSGG	1 cut(s)	15
NdeI	CATATG	2 cut(s)	63, 316
NlaIII	CATG	2 cut(s)	25, 79
NlaIV	GGNNCC	3 cut(s)	6, 91, 567
NsiI	ATGCAT	1 cut(s)	415
PagI	TCATGA	1 cut(s)	21
PfeI	GAWTC	5 cut(s)	217, 298, 337, 352, 532
PkrI	GCNGC	2 cut(s)	175, 445
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	2 cut(s)	112, 253
PspGI	CCWGG	2 cut(s)	112, 253
PspN4I	GGNNCC	3 cut(s)	6, 91, 567
PspPI	GGNCC	5 cut(s)	5, 98, 140, 311, 401
PspPPI	RGGWCCY	1 cut(s)	5
PstI	CTGCAG	1 cut(s)	448
PvuII	CAGCTG	1 cut(s)	292
RsaI	GTAC	2 cut(s)	91, 567
RsaNI	GTAC	2 cut(s)	90, 566
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	174, 444
Sau96I	GGNCC	5 cut(s)	5, 98, 140, 311, 401
ScrFI	CCNGG	3 cut(s)	15, 114, 255
SduI	GDGCHC	2 cut(s)	75, 498
SexAI	ACCWGGT	2 cut(s)	112, 253
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	1 cut(s)	444
SinI	GGWCC	4 cut(s)	5, 98, 140, 401
SmiMI	CAYNNNNRTG	1 cut(s)	66
Sse9I	AATT	7 cut(s)	25, 83, 260, 283, 323, 406, 481
SspI	AATATT	1 cut(s)	307
StyD4I	CCNGG	3 cut(s)	13, 112, 253
StyI	CCWWGG	2 cut(s)	94, 394
TaiI	ACGT	1 cut(s)	549
TasI	AATT	7 cut(s)	25, 83, 260, 283, 323, 406, 481
TfiI	GAWTC	5 cut(s)	217, 298, 337, 352, 532
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	2 cut(s)	130, 372
TseI	GCWGC	2 cut(s)	173, 443
TspDTI	ATGAA	5 cut(s)	10, 38, 179, 311, 561
TspRI	CASTG	2 cut(s)	130, 372
VneI	GTGCAC	1 cut(s)	494
VpaK11BI	GGWCC	4 cut(s)	5, 98, 140, 401
XapI	RAATTY	2 cut(s)	25, 283
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.