Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005893

Physical Location & Seq

Genomic Coordinates Forward (+)

22839292 .. 22841702

Gene Structure 2411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0244600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGACGCGTTGGACCCCGCAGAGCGTAGGTATTTTGAGGATGAGGATACTCCTACTATGAAGACAATTAAGGGTGCAACAACTGGATTGGTTACCGGAACTAATTTTGGGACCATAGTTGCTACCTGGAATGATGGCCCTGAAGATGATGGGAAACTATGGGATGACATTTTCTGCAATTGGGGAGTTTACATCGGAGTAGAGCAGCTTGTGCAGCATTATGGGTTAAAGAGAGACTTTGTAAATGGAGCTGTCGGAGGTTTTGTTGCTGGATCAACTATTCTAGGAAGGAGCATTCCAACTGCAATTTCTGCTGGAGCAGCCTTGGCAGTCACTTACGCACTGATTGATGCTGGGGTCCAGACCACAAGAATTGATAATGGCAAGGAGTACTATCCTTATACCACCAAAAAAAGATCCACTGCTGATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

NUFIP1

Protein Analysis

144

Amino Acids

15.54

Weight (kDa)

4.64

Isoelectric Point (pI)

23.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18440 AT5G18440
fragaria_vesca	FvH4_1g30390 FvH4_1g30390 FvH4_1g30390 FvH4_1g30390
malus_domestica	MD02G1263300.v1.1 MD07G1054700.v1.1
prunus_persica	Prupe.2G061400_v2.0.a1 Prupe.2G061400_v2.0.a1 Prupe.2G061400_v2.0.a1 Prupe.2G061400_v2.0.a1
pyrus_communis	pycom02g22570 pycom07g04250
rosa_chinensis	RchiOBHm_Chr3g0490591
rosa_laevigata	RLG00000022881
rosa_multiflora	Rmu_sc0007326.1_g000001 Rmu_sc0035249.1_g000001
rosa_roxburghii	Rroxscaffold_6G00393380
rosa_rugosa	Rorug03G0244300 Rorug03G0244400 Rorug03G0244500 Rorug03G0244600
rosa_samantha	Rh3AG294000 Rh3BG330200 Rh3CG327600 Rh3DG326900
rosa_wichuraiana	Rw3G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	8
AciI	CCGC	1 cut(s)	18
AclWI	GGATC	2 cut(s)	280, 411
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	1 cut(s)	392
AflIII	ACRYGT	1 cut(s)	6
AjnI	CCWGG	1 cut(s)	125
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AluBI	AGCT	2 cut(s)	208, 251
AluI	AGCT	2 cut(s)	208, 251
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	2 cut(s)	280, 411
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	3 cut(s)	205, 214, 320
AspS9I	GGNCC	4 cut(s)	13, 111, 137, 358
AvaII	GGWCC	3 cut(s)	13, 111, 358
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	3 cut(s)	217, 226, 332
BccI	CCATC	2 cut(s)	128, 143
BciT130I	CCWGG	1 cut(s)	127
BciVI	GTATCC	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	1 cut(s)	284
BfuI	GTATCC	1 cut(s)	40
BisI	GCNGC	3 cut(s)	206, 215, 321
BlsI	GCNGC	3 cut(s)	207, 216, 322
BmcAI	AGTACT	1 cut(s)	392
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	3 cut(s)	13, 111, 358
BmgT120I	GGNCC	4 cut(s)	13, 111, 137, 358
BmiI	GGNNCC	3 cut(s)	15, 112, 359
BmrFI	CCNGG	1 cut(s)	127
BmsI	GCATC	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	324
BsaWI	WCCGGW	1 cut(s)	95
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bse1I	ACTGG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	2 cut(s)	46, 169
BseNI	ACTGG	1 cut(s)	88
BseXI	GCAGC	3 cut(s)	217, 226, 332
BseYI	CCCAGC	1 cut(s)	353
BsgI	GTGCAG	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	272, 416
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	3 cut(s)	15, 112, 359
BspPI	GGATC	2 cut(s)	280, 411
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	2 cut(s)	272, 416
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	127
BstAPI	GCANNNNNTGC	2 cut(s)	211, 311
BstEII	GGTNACC	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	46, 169
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	2 cut(s)	275, 419
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	2 cut(s)	272, 416
BstMWI	GCNNNNNNNGC	5 cut(s)	211, 214, 311, 320, 326
BstNI	CCWGG	1 cut(s)	127
BstPI	GGTNACC	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	125
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	3 cut(s)	217, 226, 332
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BsuI	GTATCC	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	46, 169
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	2 cut(s)	341, 420
Cfr13I	GGNCC	4 cut(s)	13, 111, 137, 358
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	391
CspCI	CAANNNNNGTGG	2 cut(s)	355, 390
CviJI	RGCY	4 cut(s)	138, 208, 251, 323
CviKI_1	RGCY	4 cut(s)	138, 208, 251, 323
CviQI	GTAC	1 cut(s)	391
DpnI	GATC	2 cut(s)	274, 418
DpnII	GATC	2 cut(s)	272, 416
Eco130I	CCWWGG	1 cut(s)	324
Eco47I	GGWCC	3 cut(s)	13, 111, 358
Eco57I	CTGAAG	1 cut(s)	162
Eco91I	GGTNACC	1 cut(s)	91
EcoO65I	GGTNACC	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaiI	YATR	6 cut(s)	59, 116, 160, 222, 402, 433
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FaqI	GGGAC	1 cut(s)	124
FauI	CCCGC	1 cut(s)	25
Fnu4HI	GCNGC	3 cut(s)	206, 215, 321
FokI	GGATG	2 cut(s)	53, 176
Fsp4HI	GCNGC	3 cut(s)	206, 215, 321
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	3 cut(s)	206, 215, 321
GsaI	CCCAGC	1 cut(s)	357
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	96
HgaI	GACGC	1 cut(s)	14
HinfI	GANTC	1 cut(s)	428
HpaII	CCGG	1 cut(s)	96
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	2 cut(s)	197, 257
Hpy188III	TCNNGA	1 cut(s)	361
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	282
HpyCH4V	TGCA	4 cut(s)	77, 177, 214, 305
HpyF10VI	GCNNNNNNNGC	5 cut(s)	211, 214, 311, 320, 326
Kzo9I	GATC	2 cut(s)	272, 416
LmnI	GCTCC	3 cut(s)	248, 291, 317
LpnPI	CCDG	9 cut(s)	69, 109, 112, 139, 153, 255, 300, 339, 374
Lsp1109I	GCAGC	3 cut(s)	217, 226, 332
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	284
MaeIII	GTNAC	2 cut(s)	91, 331
MalI	GATC	2 cut(s)	274, 418
MboI	GATC	2 cut(s)	272, 416
MboII	GAAGA	2 cut(s)	73, 155
MfeI	CAATTG	1 cut(s)	178
MflI	RGATCY	1 cut(s)	416
MluCI	AATT	5 cut(s)	66, 103, 178, 306, 372
MluI	ACGCGT	1 cut(s)	6
MmeI	TCCRAC	2 cut(s)	235, 323
MnlI	CCTC	3 cut(s)	31, 37, 251
MseI	TTAA	2 cut(s)	69, 227
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	127
MunI	CAATTG	1 cut(s)	178
Mva1269I	GAATGC	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	127
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	5 cut(s)	211, 214, 311, 320, 326
NdeII	GATC	2 cut(s)	272, 416
NlaIV	GGNNCC	3 cut(s)	15, 112, 359
NmuCI	GTSAC	1 cut(s)	331
PctI	GAATGC	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	428
PkrI	GCNGC	3 cut(s)	207, 216, 322
Psp6I	CCWGG	1 cut(s)	125
PspEI	GGTNACC	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	3 cut(s)	15, 112, 359
PspPI	GGNCC	4 cut(s)	13, 111, 137, 358
PsuI	RGATCY	1 cut(s)	416
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SaqAI	TTAA	2 cut(s)	69, 227
SatI	GCNGC	3 cut(s)	206, 215, 321
Sau3AI	GATC	2 cut(s)	272, 416
Sau96I	GGNCC	4 cut(s)	13, 111, 137, 358
ScaI	AGTACT	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	127
SetI	ASST	5 cut(s)	32, 128, 210, 253, 262
SfaNI	GCATC	1 cut(s)	340
SinI	GGWCC	3 cut(s)	13, 111, 358
Sse9I	AATT	5 cut(s)	66, 103, 178, 306, 372
SsiI	CCGC	1 cut(s)	18
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	324
TasI	AATT	5 cut(s)	66, 103, 178, 306, 372
TatI	WGTACW	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	2 cut(s)	69, 227
Tru9I	TTAA	2 cut(s)	69, 227
TscAI	CASTG	2 cut(s)	348, 427
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	3 cut(s)	205, 214, 320
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	2 cut(s)	74, 420
TspRI	CASTG	2 cut(s)	348, 427
VpaK11BI	GGWCC	3 cut(s)	13, 111, 358
XspI	CTAG	1 cut(s)	284
ZrmI	AGTACT	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.