Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005893

Physical Location & Seq

Genomic Coordinates Reverse (-)

22835034 .. 22838318

Gene Structure 3285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0244500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2715 bp

ATGGGAGTTGAAGTGAAGGGATATAAGTGGTGGAATTTGTTTAGTTTGAGGTTACCTTATGCTCCAGATCAGTTTGAGCAACAGCGTGCATTGCAGGTTAGGTATAATGAGTTACTGTCCTTGGATGAGGCTTATAGGAAACAGAGGTCCCGAGTCCTGTGGTTGAAGGAAGGTGATAGGAACTCTGCTTTCTTCCACCGAAAGGCTTCTAATAGACAAAGTCGTAATCAGATAAAGGGTATATCAAATGCTTCAAGTCAATGGCAAACGAGTCCAGAGTTGATTTCCAATGCTTTACTTGATTATTATGGAACCATATTTCAAGCTGAAGGCACTGATCAGGAGGCAATTAATTTTGTACTTGATAAGGTCAATCCGTGTATTTCAGATGATATGAACAATTCCCTTTTGGCTGATTATTCTGATGAAGAGATAAAGAAAGCATTGTTTCAAATGCATCCTTCCAAATCACCTGGTCCGGATGGTATGTCACCAGCTTTTTTTCAGAGGTATTGGAATGTCGTTCATCATGATGTATGCCTAGCAGTGAGGACTTTTCTTCAAATTGGGCAGTTGGATTCTGAAAGTAATTTCACGCACCTTACACTGATCCCAAAGGTAAAAGAACCCAAATTGGTTTCAGATTTTCGGCCAATAGCATCATGTAATGTTGTTTACAGGATCGCTTCTAAGGTTCTTGCAAACAGGCTTAAACTTCTTCTACCTACTATAGTATCTCCCCTGCAAAGTGGATTTGTTCCGAGTCGTCTAATATCATACAACACTCTGGTAGCTTCTGAAGCAGCACATTTCATGCATAAATTACGCAACCAAAGCGAAGGTTTTTTTTCGCTCAAGCTTGACATCAGTAAGGCTTATGATCGATTAGAATGGGGCTTTCTTGAAGCTATGCTATCAAAAATGGGATTTGCTAGAAAATGGATTGATATTGTGCTCTGTTCTATTAAATCTGTTCGTTATTCTGTTTTAATGAATGGAACTCCTACAGGTTATATCATCCCTTCTAGAGGCATTCGGCAGGGAGATCCTTTATCCCCATTTTTGTTTATTCTATGTGCTGAAGGATTATCTGCAGTGATTTCGGATTCGGTGACTCAGGGTTTATTGAAAGGTTTGGTGATGTGTCCTGGGGCACCTGTGATACACCATCTCCTTTTTGCTGATGACAGTTTTCTTTTTGGGGAAGCTTCTGCAGAGGAATGTGTTCAGGTGAAAAATATTCTCAATATTTATGAGCGTGCTTCGGGCCAGCGAATTAACTTAGAGAAGAGTAGTGTTGCATTCAGTAAAAATGTGCATCCGGAATTGAAAGCTTCACTAACAGCTATCTTGGGGGTTACATGTGTTGAAGAACATGGTCGATATTTGGGTTTACCTCTTCATGTGGGGAGATCAAAGACAGCTATGTTTGCATACCTTAAGGAGAGATTGACTAAGAAACTTATTAGTTGGCGCACCAAGATTCTTAGTGCTGCTGGTAAGGAGATTTTAATTAAAGCAGTTGCTACTGTTATCCCTTTGTATATTATGAACTGCTACATGTTACCTAAGTCTCTGTGTGATGATATGCATCAACTTTGTGCTCAATTCTTTTGGGGTGGTTCTGAGGAGCACAGAAAAATACATTGGCGGTCTTGGGACCGAATGTGTTTAACTAAAGCTGAAGGTGGAATGGGTTTTAAGAACTTGCATGCTAATAATCTTTCGATGCTGGCTAAACAAGGTTGGAGGTTACTTCATAACCCTACTTCTCTTATTGCCAGATTGTATAAGGCTCGTTACTATCCAGACTACTCTTTTTTAGAGGCTAATATGGGAGAGGCTCCCTCTTTTGCATGGAGAAGCATTATGGATGCACGCCCGGTCCTTAAGGCTGGTTTACTTTGGCAGGTTGGGTCGGGTAGGGATCTAAATATTTGGAATGATGATTGGATCCCTAATGTTCCCAGCCATAATCTTCATCAGCCTAGCCATTGCAATATTCATTCGGTCTCTGATCTTATTCATTTGGAAAGCAAAACTTGGAAGAGAGAACTTCTTCAAGATTTATTTTCTGAGGAGGTTCAGGCAGCTATATTATGCATTCCTTTGAGTTTTCGTCGTACTCGAGATCGTTTAACATGGAAGCTTGATCGAAAGGGTTTCTTTTCAGTAAAGTCTGCATATTGGGTTGCTCGAGATTTTGTGATAGGGAGCTCTCTTTCCTCTACCTCTCTTGGGGATCCATTTAGCATGCTATGGAAAACCTTGTGGAAAGCCAAGGTTCCAGGTAAGGTTTCAATTTGCCTTTGGAGAGCTTGTCATAATATACTTCCCACAAGAGATTGTTTGAGCAAAAGGGGATATTCTGGTGAAATGCGTTGCTTACTTTGTCCTCATCGGTATGAAACTGTGAGTCATGTTTTTTGTGGTTGTTCTGTGGCAAGGGAAATCCTCACATCCCCTCCATTTTCTATGCAACTGCCTATTTCTCCTTCTTTTATGTTTAAGGAATGGATGCTTGAACATGCGATTTCTTTGTCTGATGACTTTGCTAAGTTGTTGATGATATTATGGGGTTTGTGGAAAAATAGAAATGAGAAGTTTTGGAATGATTATGCTATTGCTGCTCCTGCTATTGTTGCTAGTACTGTGGCCAGGTTTGAAGAGTATAGCCGCATAAACAAGGCTACTAGAAGTCAGGCTTCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko05164 map03015 map05164

Pfam Domains

Protein Families

NUFIP1

Protein Analysis

904

Amino Acids

102.92

Weight (kDa)

9.22

Isoelectric Point (pI)

43.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	208 - 465	1.5e-24	Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT	PF13966	752 - 818	8.6e-17	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18440 AT5G18440
fragaria_vesca	FvH4_1g30390 FvH4_1g30390 FvH4_1g30390 FvH4_1g30390
malus_domestica	MD02G1263300.v1.1 MD07G1054700.v1.1
prunus_persica	Prupe.2G061400_v2.0.a1 Prupe.2G061400_v2.0.a1 Prupe.2G061400_v2.0.a1 Prupe.2G061400_v2.0.a1
pyrus_communis	pycom02g22570 pycom07g04250
rosa_chinensis	RchiOBHm_Chr3g0490591
rosa_laevigata	RLG00000022881
rosa_multiflora	Rmu_sc0007326.1_g000001 Rmu_sc0035249.1_g000001
rosa_roxburghii	Rroxscaffold_6G00393380
rosa_rugosa	Rorug03G0244300 Rorug03G0244400 Rorug03G0244500 Rorug03G0244600
rosa_samantha	Rh3AG294000 Rh3BG330200 Rh3CG327600 Rh3DG326900
rosa_wichuraiana	Rw3G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	85, 1900
AccB1I	GGYRCC	1 cut(s)	1153
AccIII	TCCGGA	2 cut(s)	478, 1321
AciI	CCGC	2 cut(s)	1651, 2677
AclWI	GGATC	8 cut(s)	604, 689, 1040, 1935, 1948, 1961, 2237, 2250
AcoI	YGGCCR	2 cut(s)	650, 2655
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	4 cut(s)	348, 819, 1101, 1704
AfaI	GTAC	3 cut(s)	360, 2125, 2650
AfiI	CCNNNNNNNGG	3 cut(s)	202, 1028, 2238
AflII	CTTAAG	2 cut(s)	1439, 1889
AflIII	ACRYGT	2 cut(s)	1361, 1560
AjnI	CCWGG	4 cut(s)	472, 1147, 2287, 2657
AjuI	GAANNNNNNNTTGG	2 cut(s)	1630, 1662
Alw21I	GWGCWC	4 cut(s)	957, 1606, 1635, 2219
Alw26I	GTCTC	2 cut(s)	1578, 2017
AlwI	GGATC	8 cut(s)	604, 689, 1040, 1935, 1948, 1961, 2237, 2250
Ama87I	CYCGRG	3 cut(s)	150, 2127, 2196
Aor13HI	TCCGGA	2 cut(s)	478, 1321
AoxI	GGCC	3 cut(s)	650, 1267, 2655
ApeKI	GCWGC	4 cut(s)	803, 1493, 2090, 2627
ApoI	RAATTY	1 cut(s)	34
AseI	ATTAAT	1 cut(s)	351
Asp700I	GAANNNNTTC	3 cut(s)	205, 1224, 2058
AspLEI	GCGC	1 cut(s)	1476
AspS9I	GGNCC	5 cut(s)	147, 476, 1267, 1660, 1885
AsuC2I	CCSGG	1 cut(s)	1883
AsuHPI	GGTGA	7 cut(s)	185, 462, 483, 1123, 1150, 1243, 2384
AvaI	CYCGRG	3 cut(s)	150, 2127, 2196
AvaII	GGWCC	4 cut(s)	147, 476, 1660, 1885
BaeGI	GKGCMC	1 cut(s)	1156
BaeI	ACNNNNGTAYC	2 cut(s)	717, 750
BalI	TGGCCA	1 cut(s)	2657
BamHI	GGATCC	2 cut(s)	1953, 2242
BanI	GGYRCC	1 cut(s)	1153
BanII	GRGCYC	1 cut(s)	2219
Bbv12I	GWGCWC	4 cut(s)	957, 1606, 1635, 2219
BbvI	GCAGC	4 cut(s)	815, 1480, 2102, 2614
BccI	CCATC	2 cut(s)	476, 1176
BcgI	CGANNNNNNTGC	2 cut(s)	1083, 1117
BciT130I	CCWGG	4 cut(s)	474, 1149, 2289, 2659
BclI	TGATCA	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	1883
BcoDI	GTCTC	2 cut(s)	1578, 2017
BfaI	CTAG	6 cut(s)	542, 933, 1026, 1989, 2646, 2694
BfmI	CTRYAG	4 cut(s)	729, 1005, 1092, 1212
BfrI	CTTAAG	2 cut(s)	1439, 1889
BfuAI	ACCTGC	2 cut(s)	85, 1900
BisI	GCNGC	5 cut(s)	804, 1494, 2091, 2628, 2677
BlsI	GCNGC	5 cut(s)	805, 1495, 2092, 2629, 2678
BmcAI	AGTACT	1 cut(s)	2650
Bme1390I	CCNGG	5 cut(s)	474, 1149, 1883, 2289, 2659
Bme18I	GGWCC	4 cut(s)	147, 476, 1660, 1885
BmeT110I	CYCGRG	3 cut(s)	150, 2127, 2196
BmgT120I	GGNCC	5 cut(s)	147, 476, 1267, 1660, 1885
BmiI	GGNNCC	8 cut(s)	149, 313, 1155, 1661, 1845, 1955, 2244, 2286
BmrFI	CCNGG	5 cut(s)	474, 1149, 1883, 2289, 2659
BmsI	GCATC	7 cut(s)	466, 668, 1327, 1600, 1719, 1864, 2508
BplI	GAGNNNNNCTC	2 cut(s)	1832, 1864
BpmI	CTGGAG	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	839
BpuMI	CCSGG	1 cut(s)	1883
Bsa29I	ATCGAT	1 cut(s)	883
BsaBI	GATNNNNATC	1 cut(s)	1590
BsaI	GGTCTC	1 cut(s)	2017
BsaJI	CCNNGG	3 cut(s)	120, 1148, 2280
BsaWI	WCCGGW	2 cut(s)	478, 1321
BsaXI	ACNNNNNCTCC	7 cut(s)	27, 1155, 1185, 2305, 2335, 2449, 2479
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 1028, 2238
Bse3DI	GCAATG	2 cut(s)	89, 1993
Bse8I	GATNNNNATC	1 cut(s)	1590
BseAI	TCCGGA	2 cut(s)	478, 1321
BseBI	CCWGG	4 cut(s)	474, 1149, 2289, 2659
BseCI	ATCGAT	1 cut(s)	883
BseDI	CCNNGG	3 cut(s)	120, 1148, 2280
BseGI	GGATG	8 cut(s)	130, 457, 487, 1017, 1318, 1879, 2459, 2523
BseJI	GATNNNNATC	1 cut(s)	1590
BseLI	CCNNNNNNNGG	3 cut(s)	202, 1028, 2238
BseMI	GCAATG	2 cut(s)	89, 1993
BseMII	CTCAG	3 cut(s)	1130, 1617, 2067
BseRI	GAGGAG	2 cut(s)	1643, 2093
BseSI	GKGCMC	1 cut(s)	1156
BseXI	GCAGC	4 cut(s)	815, 1480, 2102, 2614
BseYI	CCCAGC	1 cut(s)	1967
BshFI	GGCC	3 cut(s)	652, 1269, 2657
BshNI	GGYRCC	1 cut(s)	1153
BshVI	ATCGAT	1 cut(s)	883
BsiHKAI	GWGCWC	4 cut(s)	957, 1606, 1635, 2219
BsiHKCI	CYCGRG	3 cut(s)	150, 2127, 2196
BsiSI	CCGG	3 cut(s)	479, 1322, 1883
BslFI	GGGAC	2 cut(s)	133, 1673
BslI	CCNNNNNNNGG	3 cut(s)	202, 1028, 2238
BsmAI	GTCTC	2 cut(s)	1578, 2017
BsmFI	GGGAC	2 cut(s)	133, 1673
BsmI	GAATGC	3 cut(s)	1032, 1301, 2103
BsnI	GGCC	3 cut(s)	652, 1269, 2657
Bso31I	GGTCTC	1 cut(s)	2017
BsoBI	CYCGRG	3 cut(s)	150, 2127, 2196
Bsp1286I	GDGCHC	5 cut(s)	957, 1156, 1606, 1635, 2219
Bsp13I	TCCGGA	2 cut(s)	478, 1321
BspACI	CCGC	2 cut(s)	1651, 2677
BspANI	GGCC	3 cut(s)	652, 1269, 2657
BspCNI	CTCAG	3 cut(s)	1129, 1618, 2068
BspDI	ATCGAT	1 cut(s)	883
BspEI	TCCGGA	2 cut(s)	478, 1321
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	8 cut(s)	149, 313, 1155, 1661, 1845, 1955, 2244, 2286
BspMAI	CTGCAG	2 cut(s)	1096, 1216
BspMI	ACCTGC	2 cut(s)	85, 1900
BspPI	GGATC	8 cut(s)	604, 689, 1040, 1935, 1948, 1961, 2237, 2250
BspT107I	GGYRCC	1 cut(s)	1153
BspTI	CTTAAG	2 cut(s)	1439, 1889
BspTNI	GGTCTC	1 cut(s)	2017
BsrDI	GCAATG	2 cut(s)	89, 1993
BssECI	CCNNGG	3 cut(s)	120, 1148, 2280
BssT1I	CCWWGG	2 cut(s)	120, 2280
Bst2UI	CCWGG	4 cut(s)	474, 1149, 2289, 2659
Bst4CI	ACNGT	5 cut(s)	117, 1190, 1531, 2413, 2653
Bst6I	CTCTTC	5 cut(s)	423, 1283, 1404, 2042, 2661
BstAFI	CTTAAG	2 cut(s)	1439, 1889
BstC8I	GCNNGC	7 cut(s)	87, 1260, 1271, 1713, 1734, 1879, 2255
BstDEI	CTNAG	9 cut(s)	690, 1116, 1282, 1455, 1487, 1569, 1626, 2076, 2556
BstEII	GGTNACC	1 cut(s)	51
BstENI	CCTNNNNNAGG	1 cut(s)	1026
BstF5I	GGATG	8 cut(s)	130, 457, 487, 1017, 1318, 1879, 2459, 2523
BstHHI	GCGC	1 cut(s)	1476
BstMAI	GTCTC	2 cut(s)	1578, 2017
BstMWI	GCNNNNNNNGC	7 cut(s)	91, 800, 834, 1430, 2627, 2633, 2642
BstNI	CCWGG	4 cut(s)	474, 1149, 2289, 2659
BstNSI	RCATGY	5 cut(s)	1365, 1564, 1715, 2257, 2531
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	5 cut(s)	472, 1147, 1881, 2287, 2657
BstSFI	CTRYAG	4 cut(s)	729, 1005, 1092, 1212
BstSLI	GKGCMC	1 cut(s)	1156
BstV1I	GCAGC	4 cut(s)	815, 1480, 2102, 2614
BstX2I	RGATCY	4 cut(s)	1045, 1927, 1953, 2242
BstYI	RGATCY	4 cut(s)	1045, 1927, 1953, 2242
Bsu15I	ATCGAT	1 cut(s)	883
BsuRI	GGCC	3 cut(s)	652, 1269, 2657
BsuTUI	ATCGAT	1 cut(s)	883
BtsCI	GGATG	8 cut(s)	130, 457, 487, 1017, 1318, 1879, 2459, 2523
BtsI	GCAGTG	2 cut(s)	552, 1101
BtsIMutI	CAGTG	4 cut(s)	333, 552, 605, 1101
BveI	ACCTGC	2 cut(s)	85, 1900
Cac8I	GCNNGC	7 cut(s)	87, 1260, 1271, 1713, 1734, 1879, 2255
CciI	TCATGA	1 cut(s)	529
CfoI	GCGC	1 cut(s)	1476
Cfr13I	GGNCC	5 cut(s)	147, 476, 1267, 1660, 1885
ClaI	ATCGAT	1 cut(s)	883
CsiI	ACCWGGT	1 cut(s)	472
Csp6I	GTAC	3 cut(s)	359, 2124, 2649
CviQI	GTAC	3 cut(s)	359, 2124, 2649
DdeI	CTNAG	9 cut(s)	690, 1116, 1282, 1455, 1487, 1569, 1626, 2076, 2556
EaeI	YGGCCR	2 cut(s)	650, 2655
Eam1104I	CTCTTC	5 cut(s)	423, 1283, 1404, 2042, 2661
EarI	CTCTTC	5 cut(s)	423, 1283, 1404, 2042, 2661
Ecl136II	GAGCTC	1 cut(s)	2217
Eco130I	CCWWGG	2 cut(s)	120, 2280
Eco24I	GRGCYC	1 cut(s)	2219
Eco31I	GGTCTC	1 cut(s)	2017
Eco47I	GGWCC	4 cut(s)	147, 476, 1660, 1885
Eco53kI	GAGCTC	1 cut(s)	2217
Eco57I	CTGAAG	4 cut(s)	348, 819, 1101, 1704
Eco88I	CYCGRG	3 cut(s)	150, 2127, 2196
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	2217
EcoNI	CCTNNNNNAGG	1 cut(s)	1026
EcoO109I	RGGNCCY	1 cut(s)	147
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	4 cut(s)	472, 1147, 2287, 2657
EcoT14I	CCWWGG	2 cut(s)	120, 2280
EcoT22I	ATGCAT	4 cut(s)	459, 819, 1593, 2105
EcoT38I	GRGCYC	1 cut(s)	2219
ErhI	CCWWGG	2 cut(s)	120, 2280
FalI	AAGNNNNNCTT	5 cut(s)	2026, 2058, 2150, 2182, 2689
FaqI	GGGAC	2 cut(s)	133, 1673
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	5 cut(s)	804, 1494, 2091, 2628, 2677
FokI	GGATG	8 cut(s)	137, 444, 494, 1004, 1305, 1886, 2446, 2530
FriOI	GRGCYC	1 cut(s)	2219
Fsp4HI	GCNGC	5 cut(s)	804, 1494, 2091, 2628, 2677
FspBI	CTAG	6 cut(s)	542, 933, 1026, 1989, 2646, 2694
GlaI	GCGC	1 cut(s)	1475
GluI	GCNGC	5 cut(s)	804, 1494, 2091, 2628, 2677
GsaI	CCCAGC	1 cut(s)	1971
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	3 cut(s)	652, 1269, 2657
HapII	CCGG	3 cut(s)	479, 1322, 1883
HhaI	GCGC	1 cut(s)	1476
Hin6I	GCGC	1 cut(s)	1474
HinP1I	GCGC	1 cut(s)	1474
HindIII	AAGCTT	4 cut(s)	857, 1206, 1332, 2147
HinfI	GANTC	8 cut(s)	153, 271, 578, 763, 1106, 1114, 1483, 2416
HpaII	CCGG	3 cut(s)	479, 1322, 1883
HphI	GGTGA	7 cut(s)	185, 462, 483, 1123, 1150, 1243, 2384
Hpy166II	GTNNAC	3 cut(s)	676, 1394, 1901
Hpy8I	GTNNAC	3 cut(s)	676, 1394, 1901
Hpy99I	CGWCG	1 cut(s)	2124
HpyCH4III	ACNGT	5 cut(s)	117, 1190, 1531, 2413, 2653
HpyF10VI	GCNNNNNNNGC	7 cut(s)	91, 800, 834, 1430, 2627, 2633, 2642
HpyF3I	CTNAG	9 cut(s)	690, 1116, 1282, 1455, 1487, 1569, 1626, 2076, 2556
HspAI	GCGC	1 cut(s)	1474
Kpn2I	TCCGGA	2 cut(s)	478, 1321
Ksp22I	TGATCA	1 cut(s)	337
LmnI	GCTCC	5 cut(s)	67, 1630, 1849, 2214, 2635
Lsp1109I	GCAGC	4 cut(s)	815, 1480, 2102, 2614
LweI	GCATC	7 cut(s)	466, 668, 1327, 1600, 1719, 1864, 2508
MabI	ACCWGGT	1 cut(s)	472
MaeI	CTAG	6 cut(s)	542, 933, 1026, 1989, 2646, 2694
MaeIII	GTNAC	8 cut(s)	51, 111, 489, 1111, 1357, 1563, 1752, 1799
MflI	RGATCY	4 cut(s)	1045, 1927, 1953, 2242
MhlI	GDGCHC	5 cut(s)	957, 1156, 1606, 1635, 2219
MlsI	TGGCCA	1 cut(s)	2657
MluNI	TGGCCA	1 cut(s)	2657
MlyI	GAGTC	5 cut(s)	162, 280, 772, 1108, 2425
MmeI	TCCRAC	2 cut(s)	555, 1727
Mox20I	TGGCCA	1 cut(s)	2657
Mph1103I	ATGCAT	4 cut(s)	459, 819, 1593, 2105
MroI	TCCGGA	2 cut(s)	478, 1321
MroXI	GAANNNNTTC	3 cut(s)	205, 1224, 2058
MscI	TGGCCA	1 cut(s)	2657
MslI	CAYNNNNRTG	2 cut(s)	531, 2403
Msp20I	TGGCCA	1 cut(s)	2657
MspCI	CTTAAG	2 cut(s)	1439, 1889
MspI	CCGG	3 cut(s)	479, 1322, 1883
MspR9I	CCNGG	5 cut(s)	474, 1149, 1883, 2289, 2659
Mva1269I	GAATGC	3 cut(s)	1032, 1301, 2103
MvaI	CCWGG	4 cut(s)	474, 1149, 2289, 2659
MwoI	GCNNNNNNNGC	7 cut(s)	91, 800, 834, 1430, 2627, 2633, 2642
NciI	CCSGG	1 cut(s)	1883
NlaIV	GGNNCC	8 cut(s)	149, 313, 1155, 1661, 1845, 1955, 2244, 2286
NmuCI	GTSAC	2 cut(s)	489, 1111
NsiI	ATGCAT	4 cut(s)	459, 819, 1593, 2105
NspI	RCATGY	5 cut(s)	1365, 1564, 1715, 2257, 2531
PacI	TTAATTAA	1 cut(s)	1515
PaeI	GCATGC	2 cut(s)	1715, 2257
PaeR7I	CTCGAG	2 cut(s)	2127, 2196
PagI	TCATGA	1 cut(s)	529
PciI	ACATGT	2 cut(s)	1361, 1560
PcsI	WCGNNNNNNNCGW	1 cut(s)	2125
PctI	GAATGC	3 cut(s)	1032, 1301, 2103
PdmI	GAANNNNTTC	3 cut(s)	205, 1224, 2058
PfeI	GAWTC	3 cut(s)	578, 1106, 1483
PflFI	GACNNNGTC	1 cut(s)	219
PkrI	GCNGC	5 cut(s)	805, 1495, 2092, 2629, 2678
PleI	GAGTC	5 cut(s)	161, 279, 771, 1108, 2424
PpsI	GAGTC	5 cut(s)	161, 279, 771, 1108, 2424
PpuMI	RGGWCCY	1 cut(s)	147
PscI	ACATGT	2 cut(s)	1361, 1560
PshBI	ATTAAT	1 cut(s)	351
Psp124BI	GAGCTC	1 cut(s)	2219
Psp5II	RGGWCCY	1 cut(s)	147
Psp6I	CCWGG	4 cut(s)	472, 1147, 2287, 2657
PspEI	GGTNACC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	1967
PspGI	CCWGG	4 cut(s)	472, 1147, 2287, 2657
PspN4I	GGNNCC	8 cut(s)	149, 313, 1155, 1661, 1845, 1955, 2244, 2286
PspPI	GGNCC	5 cut(s)	147, 476, 1267, 1660, 1885
PspPPI	RGGWCCY	1 cut(s)	147
PstI	CTGCAG	2 cut(s)	1096, 1216
PsuI	RGATCY	4 cut(s)	1045, 1927, 1953, 2242
PsyI	GACNNNGTC	1 cut(s)	219
RsaI	GTAC	3 cut(s)	360, 2125, 2650
RsaNI	GTAC	3 cut(s)	359, 2124, 2649
RseI	CAYNNNNRTG	2 cut(s)	531, 2403
SacI	GAGCTC	1 cut(s)	2219
SatI	GCNGC	5 cut(s)	804, 1494, 2091, 2628, 2677
Sau96I	GGNCC	5 cut(s)	147, 476, 1267, 1660, 1885
ScaI	AGTACT	1 cut(s)	2650
SchI	GAGTC	5 cut(s)	162, 280, 772, 1108, 2425
ScrFI	CCNGG	5 cut(s)	474, 1149, 1883, 2289, 2659
SduI	GDGCHC	5 cut(s)	957, 1156, 1606, 1635, 2219
SexAI	ACCWGGT	1 cut(s)	472
SfaNI	GCATC	7 cut(s)	466, 668, 1327, 1600, 1719, 1864, 2508
SfcI	CTRYAG	4 cut(s)	729, 1005, 1092, 1212
Sfr274I	CTCGAG	2 cut(s)	2127, 2196
SinI	GGWCC	4 cut(s)	147, 476, 1660, 1885
SlaI	CTCGAG	2 cut(s)	2127, 2196
SmiMI	CAYNNNNRTG	2 cut(s)	531, 2403
SmlI	CTYRAG	5 cut(s)	854, 1439, 1889, 2127, 2196
SmoI	CTYRAG	5 cut(s)	854, 1439, 1889, 2127, 2196
SphI	GCATGC	2 cut(s)	1715, 2257
SsiI	CCGC	2 cut(s)	1651, 2677
SspI	AATATT	4 cut(s)	1240, 1249, 1936, 2002
SspMI	CTAG	6 cut(s)	542, 933, 1026, 1989, 2646, 2694
SstI	GAGCTC	1 cut(s)	2219
StyD4I	CCNGG	5 cut(s)	472, 1147, 1881, 2287, 2657
StyI	CCWWGG	2 cut(s)	120, 2280
TaaI	ACNGT	5 cut(s)	117, 1190, 1531, 2413, 2653
TaqI	TCGA	6 cut(s)	883, 1381, 1727, 2128, 2155, 2197
TaqII	GACCGA	2 cut(s)	1677, 1999
TatI	WGTACW	2 cut(s)	358, 2648
TauI	GCSGC	1 cut(s)	2679
TfiI	GAWTC	3 cut(s)	578, 1106, 1483
TscAI	CASTG	4 cut(s)	340, 552, 612, 1101
TseFI	GTSAC	2 cut(s)	489, 1111
TseI	GCWGC	4 cut(s)	803, 1493, 2090, 2627
Tsp45I	GTSAC	2 cut(s)	489, 1111
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	4 cut(s)	340, 552, 612, 1101
Tth111I	GACNNNGTC	1 cut(s)	219
Vha464I	CTTAAG	2 cut(s)	1439, 1889
VpaK11BI	GGWCC	4 cut(s)	147, 476, 1660, 1885
VspI	ATTAAT	1 cut(s)	351
XagI	CCTNNNNNAGG	1 cut(s)	1026
XapI	RAATTY	1 cut(s)	34
XbaI	TCTAGA	1 cut(s)	1025
XceI	RCATGY	5 cut(s)	1365, 1564, 1715, 2257, 2531
XhoI	CTCGAG	2 cut(s)	2127, 2196
XmnI	GAANNNNTTC	3 cut(s)	205, 1224, 2058
XspI	CTAG	6 cut(s)	542, 933, 1026, 1989, 2646, 2694
ZrmI	AGTACT	1 cut(s)	2650
Zsp2I	ATGCAT	4 cut(s)	459, 819, 1593, 2105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.