Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010374

Physical Location & Seq

Genomic Coordinates Forward (+)

29115256 .. 29117142

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G305500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTACACTATTTCTGTTTCTCAGTTCATCATCTTCTCTTCTATGCCTTCCTCAATTTTTCCAAGATACCCAACTCCTTATCCTTCACTTTTACCAAAAATAACCCCATATCCCCTCACCCACTCTTCAAGAAAGCTCTCAGTCCCAGTATTTTCAAAGCCCTCTGAGGCAGAAGAAGAGCTCTCAGCCCCGGAGGACGAGTGGCTGAAGAGGCTACCGGACAAGAAGAAGCCTCTGTACTCTCACAGCCTCCCTTGCATTGAGGCCTGGCTTAGGAACTTGGGGTTTTACCAGAGCAAAGAGGACCGGGCCGTTTGGCTGGTTGAGAAGCCAGAGTGGCAGGCCCAGCTCTCACTCGACGTCACCGATCTCTATGTAAGGTATCTAAAGACCGGACCGGGTAATCTTGAAAAGGATGTGGAGAGGAGATTTAGTTATGCACTGAGCAGAGAGGACATCGAGAATGCAGTGCTTGGAGGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3143

Protein Analysis

162

Amino Acids

18.57

Weight (kDa)

6.15

Isoelectric Point (pI)

57.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52960
fragaria_vesca	FvH4_7g30800 FvH4_7g30800
malus_domestica	MD01G1213500.v1.1 MD07G1283300.v1.1
prunus_persica	Prupe.2G305500_v2.0.a1
pyrus_communis	pycom07g25740
rosa_chinensis	RchiOBHm_Chr1g0379751 RchiOBHm_Chr1g0379821
rosa_laevigata	RLG00000026357 RLG00000026361
rosa_multiflora	Rmu_sc0014259.1_g000010
rosa_roxburghii	Rroxscaffold_4G00279920
rosa_rugosa	Rorug01G0415200
rosa_samantha	Rh1AG438700 Rh1AG439200 Rh1BG395200 Rh1CG408500 Rh1DG426100
rosa_wichuraiana	Rw1G038210 Rw1G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	363
AcuI	CTGAAG	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	2 cut(s)	5, 239
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgsI	TTSAA	3 cut(s)	129, 156, 410
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	3 cut(s)	136, 181, 349
AluI	AGCT	3 cut(s)	136, 181, 349
Alw21I	GWGCWC	1 cut(s)	183
AoxI	GGCC	3 cut(s)	264, 309, 342
AspS9I	GGNCC	5 cut(s)	304, 309, 343, 395, 479
AsuC2I	CCSGG	3 cut(s)	191, 308, 399
AsuHPI	GGTGA	2 cut(s)	109, 355
AvaII	GGWCC	3 cut(s)	304, 395, 479
BanII	GRGCYC	1 cut(s)	183
BarI	GAAGNNNNNNTAC	2 cut(s)	221, 253
Bbv12I	GWGCWC	1 cut(s)	183
BceAI	ACGGC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	268
BcnI	CCSGG	3 cut(s)	191, 308, 399
BglI	GCCNNNNNGGC	1 cut(s)	337
Bme1390I	CCNGG	4 cut(s)	191, 268, 308, 399
Bme18I	GGWCC	3 cut(s)	304, 395, 479
BmgT120I	GGNCC	5 cut(s)	304, 309, 343, 395, 479
BmrFI	CCNGG	4 cut(s)	191, 268, 308, 399
BmrI	ACTGGG	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	140
Bpu10I	CCTNAGC	1 cut(s)	272
BpuMI	CCSGG	3 cut(s)	191, 308, 399
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	2 cut(s)	217, 392
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 418, 448
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseMII	CTCAG	5 cut(s)	35, 153, 156, 198, 434
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	439
BseYI	CCCAGC	1 cut(s)	345
BshFI	GGCC	3 cut(s)	266, 311, 344
BsiHKAI	GWGCWC	1 cut(s)	183
BsiSI	CCGG	5 cut(s)	191, 218, 307, 393, 398
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	3 cut(s)	266, 311, 344
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	367
BspANI	GGCC	3 cut(s)	266, 311, 344
BspCNI	CTCAG	5 cut(s)	34, 152, 157, 197, 435
BspQI	GCTCTTC	1 cut(s)	171
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	1 cut(s)	367
BssNI	GRCGYC	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	268
Bst6I	CTCTTC	4 cut(s)	43, 130, 171, 203
BstACI	GRCGYC	1 cut(s)	360
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	6 cut(s)	21, 139, 165, 184, 272, 443
BstENI	CCTNNNNNAGG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	421
BstKTI	GATC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	4 cut(s)	211, 255, 337, 346
BstNI	CCWGG	1 cut(s)	268
BstSCI	CCNGG	4 cut(s)	189, 266, 306, 397
BsuRI	GGCC	3 cut(s)	266, 311, 344
BtsCI	GGATG	1 cut(s)	421
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	2 cut(s)	440, 474
Cac8I	GCNNGC	1 cut(s)	342
Cfr13I	GGNCC	5 cut(s)	304, 309, 343, 395, 479
CpoI	CGGWCCG	1 cut(s)	395
Csp6I	GTAC	2 cut(s)	4, 238
CspI	CGGWCCG	1 cut(s)	395
CviQI	GTAC	2 cut(s)	4, 238
DdeI	CTNAG	6 cut(s)	21, 139, 165, 184, 272, 443
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
Eam1104I	CTCTTC	4 cut(s)	43, 130, 171, 203
EarI	CTCTTC	4 cut(s)	43, 130, 171, 203
Ecl136II	GAGCTC	1 cut(s)	181
Eco147I	AGGCCT	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	183
Eco47I	GGWCC	3 cut(s)	304, 395, 479
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	181
EcoNI	CCTNNNNNAGG	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	183
FaiI	YATR	4 cut(s)	44, 109, 375, 438
FaqI	GGGAC	1 cut(s)	128
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	1 cut(s)	183
GsaI	CCCAGC	1 cut(s)	349
HaeIII	GGCC	3 cut(s)	266, 311, 344
HapII	CCGG	5 cut(s)	191, 218, 307, 393, 398
Hin1I	GRCGYC	1 cut(s)	360
HpaII	CCGG	5 cut(s)	191, 218, 307, 393, 398
HphI	GGTGA	2 cut(s)	109, 355
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	3 cut(s)	129, 407, 460
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	2 cut(s)	57, 93
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	3 cut(s)	258, 440, 467
HpyF10VI	GCNNNNNNNGC	4 cut(s)	211, 255, 337, 346
HpyF3I	CTNAG	6 cut(s)	21, 139, 165, 184, 272, 443
HpySE526I	ACGT	1 cut(s)	360
Hsp92I	GRCGYC	1 cut(s)	360
Kzo9I	GATC	1 cut(s)	367
LguI	GCTCTTC	1 cut(s)	171
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	7 cut(s)	25, 30, 117, 185, 188, 220, 238
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	1 cut(s)	54
MspI	CCGG	5 cut(s)	191, 218, 307, 393, 398
MspR9I	CCNGG	4 cut(s)	191, 268, 308, 399
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	4 cut(s)	211, 255, 337, 346
NciI	CCSGG	3 cut(s)	191, 308, 399
NdeII	GATC	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	361
PceI	AGGCCT	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PctI	GAATGC	1 cut(s)	469
PpuMI	RGGWCCY	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	183
Psp5II	RGGWCCY	1 cut(s)	479
Psp6I	CCWGG	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	266
PspPI	GGNCC	5 cut(s)	304, 309, 343, 395, 479
PspPPI	RGGWCCY	1 cut(s)	479
RsaI	GTAC	2 cut(s)	5, 239
RsaNI	GTAC	2 cut(s)	4, 238
Rsr2I	CGGWCCG	1 cut(s)	395
RsrII	CGGWCCG	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	171
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	5 cut(s)	304, 309, 343, 395, 479
ScrFI	CCNGG	4 cut(s)	191, 268, 308, 399
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	6 cut(s)	138, 183, 351, 363, 383, 484
SinI	GGWCC	3 cut(s)	304, 395, 479
Sse9I	AATT	1 cut(s)	54
SseBI	AGGCCT	1 cut(s)	266
SstI	GAGCTC	1 cut(s)	183
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	4 cut(s)	189, 266, 306, 397
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	2 cut(s)	357, 459
TasI	AATT	1 cut(s)	54
TatI	WGTACW	2 cut(s)	3, 237
TscAI	CASTG	2 cut(s)	447, 474
TseFI	GTSAC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	16
TspRI	CASTG	2 cut(s)	447, 474
VpaK11BI	GGWCC	3 cut(s)	304, 395, 479
XagI	CCTNNNNNAGG	1 cut(s)	271
ZraI	GACGTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.