Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0010374

Physical Location & Seq

Genomic Coordinates Forward (+)

25958806 .. 25960157

Gene Structure 1352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTCCGCCATTTCTCTCTCCAAATTCATCACCTTCTCCTCCTTTTCTTCCCCAAGTTTTCCAAAGTATCCAACTCCGTACACTTCACTTTCACCCAAATTCCCACCGTATCCCCTCACTCACTCTTCCAGAAAGCTCTCGGTCCCGGTGTTTTCCAAGCCCTCCGAGGCGGAGGAGGAAGAGGAGCAGTCGTCGGCGCCGGAGGACGAGTGGCTGCAGAAGCTGCCGGACAAGAAGAAGCCGCTGTACGCCCACAGCCTCCCCTGCATCGAGGCCTGGCTGAGGAACTTGGGGTTTTACCAGAGCAAAGAGGACCGGGCGGATTGGCTGGTAGAGAAGCCCGAGTGGCACGCGCAGCTCTCCCTCGACGTCACCGATTTGTATGTGAGGTATCTAAAGACCGGACCAGGAAACCTTGAAAAGGATGTGGAGAGGAGATTTAGTTATGCACTGAGCAGAGAGGACATTGAGAATGCAGTGCTTGGAGGGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3143

Protein Analysis

165

Amino Acids

18.77

Weight (kDa)

5.46

Isoelectric Point (pI)

72.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52960
fragaria_vesca	FvH4_7g30800 FvH4_7g30800
malus_domestica	MD01G1213500.v1.1 MD07G1283300.v1.1
prunus_persica	Prupe.2G305500_v2.0.a1
pyrus_communis	pycom07g25740
rosa_chinensis	RchiOBHm_Chr1g0379751 RchiOBHm_Chr1g0379821
rosa_laevigata	RLG00000026357 RLG00000026361
rosa_multiflora	Rmu_sc0014259.1_g000010
rosa_roxburghii	Rroxscaffold_4G00279920
rosa_rugosa	Rorug01G0415200
rosa_samantha	Rh1AG438700 Rh1AG439200 Rh1BG395200 Rh1CG408500 Rh1DG426100
rosa_wichuraiana	Rw1G038210 Rw1G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	372
AccB1I	GGYRCC	1 cut(s)	196
AccII	CGCG	1 cut(s)	353
AciI	CCGC	4 cut(s)	6, 170, 242, 320
AcsI	RAATTY	2 cut(s)	23, 98
AcyI	GRCGYC	2 cut(s)	197, 369
AfaI	GTAC	2 cut(s)	80, 248
AfiI	CCNNNNNNNGG	2 cut(s)	282, 421
AgsI	TTSAA	1 cut(s)	419
AjnI	CCWGG	2 cut(s)	275, 406
AluBI	AGCT	3 cut(s)	136, 223, 358
AluI	AGCT	3 cut(s)	136, 223, 358
AlwNI	CAGNNNCTG	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	2 cut(s)	273, 488
ApeKI	GCWGC	3 cut(s)	214, 223, 355
ApoI	RAATTY	2 cut(s)	23, 98
AspLEI	GCGC	2 cut(s)	199, 355
AspS9I	GGNCC	4 cut(s)	142, 313, 404, 488
AsuC2I	CCSGG	2 cut(s)	146, 317
AsuHPI	GGTGA	3 cut(s)	22, 84, 364
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	3 cut(s)	142, 313, 404
BanI	GGYRCC	1 cut(s)	196
BarI	GAAGNNNNNNTAC	2 cut(s)	230, 262
BbvCI	CCTCAGC	1 cut(s)	281
BbvI	GCAGC	3 cut(s)	201, 210, 367
BciT130I	CCWGG	2 cut(s)	277, 408
BciVI	GTATCC	2 cut(s)	78, 120
BcnI	CCSGG	2 cut(s)	146, 317
BfmI	CTRYAG	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	200
BfuI	GTATCC	2 cut(s)	78, 120
BglI	GCCNNNNNGGC	1 cut(s)	346
BisI	GCNGC	4 cut(s)	215, 224, 242, 356
BlsI	GCNGC	4 cut(s)	216, 225, 243, 357
Bme1390I	CCNGG	4 cut(s)	146, 277, 317, 408
Bme18I	GGWCC	3 cut(s)	142, 313, 404
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	4 cut(s)	142, 313, 404, 488
BmiI	GGNNCC	2 cut(s)	144, 198
BmrFI	CCNGG	4 cut(s)	146, 277, 317, 408
BmsI	GCATC	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	281
BpuMI	CCSGG	2 cut(s)	146, 317
BsaHI	GRCGYC	2 cut(s)	197, 369
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	401
BsaXI	ACNNNNNCTCC	6 cut(s)	176, 194, 206, 224, 427, 457
Bsc4I	CCNNNNNNNGG	2 cut(s)	282, 421
BseBI	CCWGG	2 cut(s)	277, 408
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	2 cut(s)	282, 421
BseMII	CTCAG	2 cut(s)	272, 443
BseRI	GAGGAG	4 cut(s)	28, 188, 197, 448
BseXI	GCAGC	3 cut(s)	201, 210, 367
Bsh1236I	CGCG	1 cut(s)	353
BshFI	GGCC	2 cut(s)	275, 490
BshNI	GGYRCC	1 cut(s)	196
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	5 cut(s)	146, 200, 227, 316, 402
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	282, 421
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	2 cut(s)	275, 490
BsoBI	CYCGRG	1 cut(s)	341
BspACI	CCGC	4 cut(s)	6, 170, 242, 320
BspANI	GGCC	2 cut(s)	275, 490
BspCNI	CTCAG	2 cut(s)	273, 444
BspFNI	CGCG	1 cut(s)	353
BspLI	GGNNCC	2 cut(s)	144, 198
BspMAI	CTGCAG	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	165
BssNI	GRCGYC	2 cut(s)	197, 369
Bst2UI	CCWGG	2 cut(s)	277, 408
Bst4CI	ACNGT	1 cut(s)	108
Bst6I	CTCTTC	2 cut(s)	130, 174
BstACI	GRCGYC	2 cut(s)	197, 369
BstAPI	GCANNNNNTGC	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	2 cut(s)	281, 452
BstENI	CCTNNNNNAGG	2 cut(s)	280, 419
BstF5I	GGATG	1 cut(s)	430
BstFNI	CGCG	1 cut(s)	353
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	2 cut(s)	199, 355
BstMWI	GCNNNNNNNGC	6 cut(s)	220, 223, 264, 346, 355, 487
BstNI	CCWGG	2 cut(s)	277, 408
BstSCI	CCNGG	4 cut(s)	144, 275, 315, 406
BstSFI	CTRYAG	1 cut(s)	215
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	3 cut(s)	201, 210, 367
BsuI	GTATCC	2 cut(s)	78, 120
BsuRI	GGCC	2 cut(s)	275, 490
BtsCI	GGATG	1 cut(s)	430
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	2 cut(s)	449, 483
Cac8I	GCNNGC	1 cut(s)	351
CaiI	CAGNNNCTG	1 cut(s)	223
CfoI	GCGC	2 cut(s)	199, 355
Cfr13I	GGNCC	4 cut(s)	142, 313, 404, 488
Csp6I	GTAC	2 cut(s)	79, 247
CviQI	GTAC	2 cut(s)	79, 247
DdeI	CTNAG	2 cut(s)	281, 452
DinI	GGCGCC	1 cut(s)	198
Eam1104I	CTCTTC	2 cut(s)	130, 174
EarI	CTCTTC	2 cut(s)	130, 174
EciI	GGCGGA	2 cut(s)	185, 335
Eco147I	AGGCCT	1 cut(s)	275
Eco47I	GGWCC	3 cut(s)	142, 313, 404
Eco88I	CYCGRG	1 cut(s)	341
EcoNI	CCTNNNNNAGG	2 cut(s)	280, 419
EcoO109I	RGGNCCY	1 cut(s)	488
EcoRII	CCWGG	2 cut(s)	275, 406
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
FaiI	YATR	2 cut(s)	384, 447
FaqI	GGGAC	1 cut(s)	128
Fnu4HI	GCNGC	4 cut(s)	215, 224, 242, 356
FokI	GGATG	1 cut(s)	437
Fsp4HI	GCNGC	4 cut(s)	215, 224, 242, 356
GlaI	GCGC	2 cut(s)	198, 354
GluI	GCNGC	4 cut(s)	215, 224, 242, 356
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	2 cut(s)	275, 490
HapII	CCGG	5 cut(s)	146, 200, 227, 316, 402
HhaI	GCGC	2 cut(s)	199, 355
Hin1I	GRCGYC	2 cut(s)	197, 369
Hin6I	GCGC	2 cut(s)	197, 353
HinP1I	GCGC	2 cut(s)	197, 353
HpaII	CCGG	5 cut(s)	146, 200, 227, 316, 402
HphI	GGTGA	3 cut(s)	22, 84, 364
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	1 cut(s)	129
Hpy8I	GTNNAC	1 cut(s)	81
Hpy99I	CGWCG	2 cut(s)	196, 371
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	4 cut(s)	217, 267, 449, 476
HpyF10VI	GCNNNNNNNGC	6 cut(s)	220, 223, 264, 346, 355, 487
HpyF3I	CTNAG	2 cut(s)	281, 452
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	2 cut(s)	197, 369
HspAI	GCGC	2 cut(s)	197, 353
KasI	GGCGCC	1 cut(s)	196
LmnI	GCTCC	1 cut(s)	184
Lsp1109I	GCAGC	3 cut(s)	201, 210, 367
LweI	GCATC	1 cut(s)	276
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	370
MboII	GAAGA	4 cut(s)	39, 117, 191, 247
MluCI	AATT	2 cut(s)	23, 98
Mly113I	GGCGCC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	95
MseI	TTAA	1 cut(s)	493
MspA1I	CMGCKG	1 cut(s)	244
MspI	CCGG	5 cut(s)	146, 200, 227, 316, 402
MspR9I	CCNGG	4 cut(s)	146, 277, 317, 408
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	2 cut(s)	277, 408
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	6 cut(s)	220, 223, 264, 346, 355, 487
NarI	GGCGCC	1 cut(s)	197
NciI	CCSGG	2 cut(s)	146, 317
NlaIV	GGNNCC	2 cut(s)	144, 198
NmuCI	GTSAC	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PctI	GAATGC	1 cut(s)	478
PkrI	GCNGC	4 cut(s)	216, 225, 243, 357
PluTI	GGCGCC	1 cut(s)	200
Psp6I	CCWGG	2 cut(s)	275, 406
PspGI	CCWGG	2 cut(s)	275, 406
PspN4I	GGNNCC	2 cut(s)	144, 198
PspPI	GGNCC	4 cut(s)	142, 313, 404, 488
PstI	CTGCAG	1 cut(s)	219
PstNI	CAGNNNCTG	1 cut(s)	223
RsaI	GTAC	2 cut(s)	80, 248
RsaNI	GTAC	2 cut(s)	79, 247
SaqAI	TTAA	1 cut(s)	493
SatI	GCNGC	4 cut(s)	215, 224, 242, 356
Sau96I	GGNCC	4 cut(s)	142, 313, 404, 488
ScrFI	CCNGG	4 cut(s)	146, 277, 317, 408
SetI	ASST	7 cut(s)	35, 138, 225, 360, 372, 392, 417
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	215
SfoI	GGCGCC	1 cut(s)	198
SinI	GGWCC	3 cut(s)	142, 313, 404
Sse9I	AATT	2 cut(s)	23, 98
SseBI	AGGCCT	1 cut(s)	275
SsiI	CCGC	4 cut(s)	6, 170, 242, 320
SspDI	GGCGCC	1 cut(s)	196
StuI	AGGCCT	1 cut(s)	275
StyD4I	CCNGG	4 cut(s)	144, 275, 315, 406
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	270, 366
TaqII	GACCGA	1 cut(s)	130
TasI	AATT	2 cut(s)	23, 98
TauI	GCSGC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	493
Tru9I	TTAA	1 cut(s)	493
TscAI	CASTG	2 cut(s)	456, 483
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	3 cut(s)	214, 223, 355
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	1 cut(s)	16
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	2 cut(s)	456, 483
VpaK11BI	GGWCC	3 cut(s)	142, 313, 404
XagI	CCTNNNNNAGG	2 cut(s)	280, 419
XapI	RAATTY	2 cut(s)	23, 98
ZraI	GACGTC	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.