Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014259.1

Orthogroup ID

OG0010374

Physical Location & Seq

Genomic Coordinates Forward (+)

32085 .. 35095

Gene Structure 3011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014259.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggggttgaagaagtgggatcgaagcaaaacgacgtcgtggaggttttggtgggaaatgaaaattgggaataaggtctttggcgggttaacttcggctcgttcggtctccgagaaggctcgcgactccggtgttttctcaaatccaaaatactctgttcgctattcaatttctcctaaagcgacgccgtttcggctcgttcggtctccgagaaggctcgcgactccggtgttttcgaagtcgtcggaggcggaggaggtctcggcggcgccggaggacgagtggctgaagaggctaccggacaagaagaagcctttgtactctcacagtcttccttgcattgaggcctggctgagaagcttggggtttttccagagcagagaggaccgggcggtttggctgatcgaaaagcccgagtggcatgcgcagctctctctcgacgttaccgatctctatgtcaggtatctaaagaccggacctggaaatcttgaaaaggatatggagaggaggtttagctatgcactgagcagagaggacatcgaaaatgcagtgcttggaggtccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3143

Protein Analysis

188

Amino Acids

21.73

Weight (kDa)

9.68

Isoelectric Point (pI)

57.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52960
fragaria_vesca	FvH4_7g30800 FvH4_7g30800
malus_domestica	MD01G1213500.v1.1 MD07G1283300.v1.1
prunus_persica	Prupe.2G305500_v2.0.a1
pyrus_communis	pycom07g25740
rosa_chinensis	RchiOBHm_Chr1g0379751 RchiOBHm_Chr1g0379821
rosa_laevigata	RLG00000026357 RLG00000026361
rosa_multiflora	Rmu_sc0014259.1_g000010
rosa_roxburghii	Rroxscaffold_4G00279920
rosa_rugosa	Rorug01G0415200
rosa_samantha	Rh1AG438700 Rh1AG439200 Rh1BG395200 Rh1CG408500 Rh1DG426100
rosa_wichuraiana	Rw1G038210 Rw1G038230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	38
Acc16I	TGCGCA	1 cut(s)	426
AccB1I	GGYRCC	1 cut(s)	268
AccII	CGCG	2 cut(s)	123, 221
AciI	CCGC	4 cut(s)	84, 251, 266, 392
AclWI	GGATC	1 cut(s)	27
AcuI	CTGAAG	1 cut(s)	308
AcyI	GRCGYC	3 cut(s)	35, 185, 269
AfaI	GTAC	1 cut(s)	320
AgsI	TTSAA	3 cut(s)	10, 168, 491
AjnI	CCWGG	2 cut(s)	347, 478
AjuI	GAANNNNNNNTTGG	2 cut(s)	48, 80
AluBI	AGCT	3 cut(s)	360, 430, 516
AluI	AGCT	3 cut(s)	360, 430, 516
Alw26I	GTCTC	3 cut(s)	112, 210, 265
AlwI	GGATC	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	427
AspLEI	GCGC	2 cut(s)	271, 427
AspS9I	GGNCC	3 cut(s)	385, 476, 560
AsuC2I	CCSGG	1 cut(s)	389
AsuII	TTCGAA	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	3 cut(s)	385, 476, 560
BanI	GGYRCC	1 cut(s)	268
BarI	GAAGNNNNNNTAC	2 cut(s)	302, 334
BbsI	GAAGAC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	439
BceAI	ACGGC	1 cut(s)	172
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BciT130I	CCWGG	2 cut(s)	349, 480
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	3 cut(s)	112, 210, 265
BfoI	RGCGCY	1 cut(s)	272
BglI	GCCNNNNNGGC	2 cut(s)	193, 418
BisI	GCNGC	2 cut(s)	267, 428
BlsI	GCNGC	2 cut(s)	268, 429
Bme1390I	CCNGG	3 cut(s)	349, 389, 480
Bme18I	GGWCC	3 cut(s)	385, 476, 560
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	3 cut(s)	385, 476, 560
BmiI	GGNNCC	2 cut(s)	270, 562
BmrFI	CCNGG	3 cut(s)	349, 389, 480
BpiI	GAAGAC	1 cut(s)	323
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
Bpu14I	TTCGAA	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	389
BsaHI	GRCGYC	3 cut(s)	35, 185, 269
BsaI	GGTCTC	3 cut(s)	112, 210, 265
BsaWI	WCCGGW	4 cut(s)	128, 226, 298, 473
BsaXI	ACNNNNNCTCC	4 cut(s)	266, 296, 494, 524
BseBI	CCWGG	2 cut(s)	349, 480
BseMII	CTCAG	2 cut(s)	344, 515
BseRI	GAGGAG	2 cut(s)	269, 520
BseXI	GCAGC	1 cut(s)	439
Bsh1236I	CGCG	2 cut(s)	123, 221
BshFI	GGCC	1 cut(s)	347
BshNI	GGYRCC	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	6 cut(s)	129, 227, 272, 299, 388, 474
BslFI	GGGAC	1 cut(s)	546
BsmAI	GTCTC	3 cut(s)	112, 210, 265
BsmFI	GGGAC	1 cut(s)	546
BsnI	GGCC	1 cut(s)	347
Bso31I	GGTCTC	3 cut(s)	112, 210, 265
BsoBI	CYCGRG	1 cut(s)	413
Bsp119I	TTCGAA	1 cut(s)	236
Bsp143I	GATC	3 cut(s)	19, 402, 448
Bsp68I	TCGCGA	2 cut(s)	123, 221
BspACI	CCGC	4 cut(s)	84, 251, 266, 392
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	2 cut(s)	345, 516
BspFNI	CGCG	2 cut(s)	123, 221
BspLI	GGNNCC	2 cut(s)	270, 562
BspPI	GGATC	1 cut(s)	27
BspT104I	TTCGAA	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	268
BspTNI	GGTCTC	3 cut(s)	112, 210, 265
BssMI	GATC	3 cut(s)	19, 402, 448
BssNI	GRCGYC	3 cut(s)	35, 185, 269
Bst2UI	CCWGG	2 cut(s)	349, 480
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	284
BstACI	GRCGYC	3 cut(s)	35, 185, 269
BstBI	TTCGAA	1 cut(s)	236
BstC8I	GCNNGC	3 cut(s)	121, 219, 423
BstDEI	CTNAG	2 cut(s)	353, 524
BstFNI	CGCG	2 cut(s)	123, 221
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	2 cut(s)	271, 427
BstKTI	GATC	3 cut(s)	22, 405, 451
BstMAI	GTCTC	3 cut(s)	112, 210, 265
BstMBI	GATC	3 cut(s)	19, 402, 448
BstMWI	GCNNNNNNNGC	4 cut(s)	193, 292, 418, 427
BstNI	CCWGG	2 cut(s)	349, 480
BstNSI	RCATGY	1 cut(s)	425
BstSCI	CCNGG	3 cut(s)	347, 387, 478
BstUI	CGCG	2 cut(s)	123, 221
BstV1I	GCAGC	1 cut(s)	439
BstV2I	GAAGAC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	347
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	2 cut(s)	521, 555
BtuMI	TCGCGA	2 cut(s)	123, 221
Cac8I	GCNNGC	3 cut(s)	121, 219, 423
CfoI	GCGC	2 cut(s)	271, 427
Cfr13I	GGNCC	3 cut(s)	385, 476, 560
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	1 cut(s)	422
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	2 cut(s)	353, 524
DinI	GGCGCC	1 cut(s)	270
DpnI	GATC	3 cut(s)	21, 404, 450
DpnII	GATC	3 cut(s)	19, 402, 448
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
EciI	GGCGGA	1 cut(s)	266
Eco147I	AGGCCT	1 cut(s)	347
Eco31I	GGTCTC	3 cut(s)	112, 210, 265
Eco47I	GGWCC	3 cut(s)	385, 476, 560
Eco57I	CTGAAG	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	560
EcoRII	CCWGG	2 cut(s)	347, 478
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
FaeI	CATG	1 cut(s)	425
FaiI	YATR	4 cut(s)	423, 456, 500, 519
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	1 cut(s)	421
FauI	CCCGC	1 cut(s)	77
Fnu4HI	GCNGC	2 cut(s)	267, 428
Fsp4HI	GCNGC	2 cut(s)	267, 428
FspI	TGCGCA	1 cut(s)	426
GlaI	GCGC	2 cut(s)	270, 426
GluI	GCNGC	2 cut(s)	267, 428
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	1 cut(s)	347
HapII	CCGG	6 cut(s)	129, 227, 272, 299, 388, 474
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	2 cut(s)	271, 427
Hin1I	GRCGYC	3 cut(s)	35, 185, 269
Hin1II	CATG	1 cut(s)	425
Hin6I	GCGC	2 cut(s)	269, 425
HinP1I	GCGC	2 cut(s)	269, 425
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	358
HinfI	GANTC	2 cut(s)	125, 223
HpaI	GTTAAC	1 cut(s)	90
HpaII	CCGG	6 cut(s)	129, 227, 272, 299, 388, 474
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	3 cut(s)	112, 210, 247
Hpy188III	TCNNGA	5 cut(s)	122, 220, 373, 437, 488
Hpy8I	GTNNAC	1 cut(s)	90
Hpy99I	CGWCG	5 cut(s)	37, 40, 187, 247, 443
HpyAV	CCTTC	2 cut(s)	109, 207
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	2 cut(s)	35, 441
HpyCH4V	TGCA	3 cut(s)	339, 521, 548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	193, 292, 418, 427
HpyF3I	CTNAG	2 cut(s)	353, 524
HpySE526I	ACGT	2 cut(s)	35, 441
Hsp92I	GRCGYC	3 cut(s)	35, 185, 269
Hsp92II	CATG	1 cut(s)	425
HspAI	GCGC	2 cut(s)	269, 425
KasI	GGCGCC	1 cut(s)	268
KspAI	GTTAAC	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	19, 402, 448
Lsp1109I	GCAGC	1 cut(s)	439
MaeII	ACGT	2 cut(s)	35, 441
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	3 cut(s)	21, 404, 450
MboI	GATC	3 cut(s)	19, 402, 448
MboII	GAAGA	4 cut(s)	22, 301, 319, 323
MluCI	AATT	2 cut(s)	63, 168
Mly113I	GGCGCC	1 cut(s)	269
MlyI	GAGTC	2 cut(s)	119, 217
MmeI	TCCRAC	1 cut(s)	225
MseI	TTAA	1 cut(s)	89
MspI	CCGG	6 cut(s)	129, 227, 272, 299, 388, 474
MspR9I	CCNGG	3 cut(s)	349, 389, 480
MvaI	CCWGG	2 cut(s)	349, 480
MvnI	CGCG	2 cut(s)	123, 221
MwoI	GCNNNNNNNGC	4 cut(s)	193, 292, 418, 427
NarI	GGCGCC	1 cut(s)	269
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	3 cut(s)	19, 402, 448
NlaIII	CATG	1 cut(s)	425
NlaIV	GGNNCC	2 cut(s)	270, 562
NmeAIII	GCCGAG	1 cut(s)	242
NruI	TCGCGA	2 cut(s)	123, 221
NsbI	TGCGCA	1 cut(s)	426
NspI	RCATGY	1 cut(s)	425
NspV	TTCGAA	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	425
PceI	AGGCCT	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	2 cut(s)	411, 444
PkrI	GCNGC	2 cut(s)	268, 429
PleI	GAGTC	2 cut(s)	119, 217
PluTI	GGCGCC	1 cut(s)	272
PpsI	GAGTC	2 cut(s)	119, 217
PpuMI	RGGWCCY	1 cut(s)	560
Psp5II	RGGWCCY	1 cut(s)	560
Psp6I	CCWGG	2 cut(s)	347, 478
PspGI	CCWGG	2 cut(s)	347, 478
PspN4I	GGNNCC	2 cut(s)	270, 562
PspPI	GGNCC	3 cut(s)	385, 476, 560
PspPPI	RGGWCCY	1 cut(s)	560
RruI	TCGCGA	2 cut(s)	123, 221
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	2 cut(s)	267, 428
Sau3AI	GATC	3 cut(s)	19, 402, 448
Sau96I	GGNCC	3 cut(s)	385, 476, 560
SchI	GAGTC	2 cut(s)	119, 217
ScrFI	CCNGG	3 cut(s)	349, 389, 480
SfoI	GGCGCC	1 cut(s)	270
SfuI	TTCGAA	1 cut(s)	236
SinI	GGWCC	3 cut(s)	385, 476, 560
SphI	GCATGC	1 cut(s)	425
Sse9I	AATT	2 cut(s)	63, 168
SseBI	AGGCCT	1 cut(s)	347
SsiI	CCGC	4 cut(s)	84, 251, 266, 392
SspDI	GGCGCC	1 cut(s)	268
StuI	AGGCCT	1 cut(s)	347
StyD4I	CCNGG	3 cut(s)	347, 387, 478
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	2 cut(s)	38, 444
TaqI	TCGA	5 cut(s)	22, 236, 405, 438, 540
TaqII	GACCGA	2 cut(s)	94, 192
TasI	AATT	2 cut(s)	63, 168
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	2 cut(s)	528, 555
TseI	GCWGC	1 cut(s)	427
TspDTI	ATGAA	1 cut(s)	74
TspRI	CASTG	2 cut(s)	528, 555
VpaK11BI	GGWCC	3 cut(s)	385, 476, 560
XceI	RCATGY	1 cut(s)	425
ZraI	GACGTC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.