RchiOBHm_Chr1g0379751

Protein of unknown function (DUF3143)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0010374
Physical Location & Seq
Forward (+)
65713720 .. 65714029
310 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60306

Sequence Viewer

Length: 228 bp
ATGTCGACCGTCTTCTTCTCCGTTTCGAATTTCATCTTCTTCTCAAATCCAAAATACTCTGTTAGCTATTCAATTTCTCCTAAAGCGACGCCGTTTAGGCTCGTTCGGTCTCCGAGAAGGCTCGCGACTCCGGTGTTTTCGAAGTCGTCGGCGGCGCCGGAGGACGAGTGGCTGAAGAGGCTACCGGACAAGAAGAAGCCTTTGTGCTCTCACAGTCTTCCTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3143

Protein Analysis

75

Amino Acids

8.47

Weight (kDa)

10.29

Isoelectric Point (pI)

57.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 154
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 125
AciI CCGC 1 cut(s) 152
AcsI RAATTY 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 194
AcyI GRCGYC 2 cut(s) 89, 155
AgsI TTSAA 1 cut(s) 72
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 28
AspLEI GCGC 1 cut(s) 157
AsuII TTCGAA 2 cut(s) 26, 140
BanI GGYRCC 1 cut(s) 154
BbsI GAAGAC 2 cut(s) 4, 209
Bbv12I GWGCWC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 114
BfoI RGCGCY 1 cut(s) 158
BglI GCCNNNNNGGC 1 cut(s) 97
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 222
BpiI GAAGAC 2 cut(s) 4, 209
Bpu14I TTCGAA 2 cut(s) 26, 140
BsaHI GRCGYC 2 cut(s) 89, 155
BsaI GGTCTC 1 cut(s) 114
BsaWI WCCGGW 2 cut(s) 130, 184
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
BseBI CCWGG 1 cut(s) 222
Bsh1236I CGCG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 9
BshNI GGYRCC 1 cut(s) 154
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 3 cut(s) 131, 158, 185
BsmAI GTCTC 1 cut(s) 114
Bso31I GGTCTC 1 cut(s) 114
Bsp119I TTCGAA 2 cut(s) 26, 140
Bsp1286I GDGCHC 1 cut(s) 209
Bsp68I TCGCGA 1 cut(s) 125
BspACI CCGC 1 cut(s) 152
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 156
BspT104I TTCGAA 2 cut(s) 26, 140
BspT107I GGYRCC 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 114
BssNI GRCGYC 2 cut(s) 89, 155
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 2 cut(s) 10, 215
Bst6I CTCTTC 1 cut(s) 170
BstACI GRCGYC 2 cut(s) 89, 155
BstBI TTCGAA 2 cut(s) 26, 140
BstC8I GCNNGC 1 cut(s) 123
BstFNI CGCG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 114
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 97, 178
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstUI CGCG 1 cut(s) 125
BstV2I GAAGAC 2 cut(s) 4, 209
BtuMI TCGCGA 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 123
CfoI GCGC 1 cut(s) 157
CseI GACGC 1 cut(s) 97
CviJI RGCY 7 cut(s) 66, 100, 121, 172, 181, 199, 225
CviKI_1 RGCY 7 cut(s) 66, 100, 121, 172, 181, 199, 225
DinI GGCGCC 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 220
EgeI GGCGCC 1 cut(s) 156
EheI GGCGCC 1 cut(s) 156
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
GlaI GCGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 158
HapII CCGG 3 cut(s) 131, 158, 185
HgaI GACGC 1 cut(s) 97
HhaI GCGC 1 cut(s) 157
Hin1I GRCGYC 2 cut(s) 89, 155
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 127
HpaII CCGG 3 cut(s) 131, 158, 185
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 2 cut(s) 91, 151
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 2 cut(s) 10, 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 178
Hsp92I GRCGYC 2 cut(s) 89, 155
HspAI GCGC 1 cut(s) 155
KasI GGCGCC 1 cut(s) 154
LpnPI CCDG 4 cut(s) 144, 171, 198, 207
MboII GAAGA 7 cut(s) 4, 7, 28, 31, 187, 205, 209
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 2 cut(s) 28, 72
Mly113I GGCGCC 1 cut(s) 155
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 2 cut(s) 154, 171
MspI CCGG 3 cut(s) 131, 158, 185
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 97, 178
NarI GGCGCC 1 cut(s) 155
NlaIV GGNNCC 1 cut(s) 156
NruI TCGCGA 1 cut(s) 125
NspV TTCGAA 2 cut(s) 26, 140
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 121
PluTI GGCGCC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 156
RruI TCGCGA 1 cut(s) 125
SalI GTCGAC 1 cut(s) 4
SatI GCNGC 1 cut(s) 153
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 1 cut(s) 209
SetI ASST 1 cut(s) 68
SfoI GGCGCC 1 cut(s) 156
SfuI TTCGAA 2 cut(s) 26, 140
SgeI CNNG 9 cut(s) 113, 126, 134, 136, 143, 170, 178, 197, 202
Sse9I AATT 2 cut(s) 28, 72
SsiI CCGC 1 cut(s) 152
SspDI GGCGCC 1 cut(s) 154
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 10, 215
TaqI TCGA 3 cut(s) 5, 26, 140
TaqII GACCGA 1 cut(s) 96
TasI AATT 2 cut(s) 28, 72
TauI GCSGC 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 22
TspGWI ACGGA 1 cut(s) 10
XapI RAATTY 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.