Rh1AG438700

Protein of unknown function (DUF3143)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0010374
Physical Location & Seq
Forward (+)
66192232 .. 66194081
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG438700.1

Sequence Viewer

Length: 324 bp
ATGTCGACCGTCTTCTTCTCCGTTTCGAATTTCATCTTCTTCTCAAATCCAAACTACTCTGTTCGCTATTCAATTTCGCCTAAAGCGACGCCGTTTCGGCTCGTTCGGTCTCCGAGAAGGCTCGCGACTCCGAGCAGAGAGGACCGGGCCGTTTGGCTGATCGAAAAGCCCGAGTGGCATGCCCAGCTCTCTCTCGACGTTACCGATCTCTATGTCAGGTATCTAAAGACTGGACCTGGAAATCTTGAAAACGATATGGAGAGGAGGTTTAGCTATGCACTGAGCAGAGAGGACATTGAAAATGCAGTGCTTGGAGGTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3143

Protein Analysis

107

Amino Acids

12.39

Weight (kDa)

9.15

Isoelectric Point (pI)

54.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3143 PF11341 45 - 106 3.8e-22 Protein of unknown function (DUF3143)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 125
AcsI RAATTY 1 cut(s) 28
AcyI GRCGYC 1 cut(s) 89
AgsI TTSAA 3 cut(s) 72, 248, 299
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 2 cut(s) 187, 273
AluI AGCT 2 cut(s) 187, 273
Alw26I GTCTC 1 cut(s) 114
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 1 cut(s) 147
ApoI RAATTY 1 cut(s) 28
AspS9I GGNCC 4 cut(s) 142, 147, 233, 317
AsuC2I CCSGG 1 cut(s) 146
AsuII TTCGAA 1 cut(s) 26
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 3 cut(s) 142, 233, 317
BbsI GAAGAC 1 cut(s) 4
BceAI ACGGC 2 cut(s) 76, 134
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 1 cut(s) 237
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 114
BglI GCCNNNNNGGC 2 cut(s) 97, 175
Bme1390I CCNGG 2 cut(s) 146, 237
Bme18I GGWCC 3 cut(s) 142, 233, 317
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 4 cut(s) 142, 147, 233, 317
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 2 cut(s) 146, 237
BpiI GAAGAC 1 cut(s) 4
Bpu14I TTCGAA 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bse1I ACTGG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 237
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 277
BseYI CCCAGC 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 1 cut(s) 303
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 303
BsnI GGCC 1 cut(s) 149
Bso31I GGTCTC 1 cut(s) 114
BsoBI CYCGRG 1 cut(s) 170
Bsp119I TTCGAA 1 cut(s) 26
Bsp143I GATC 2 cut(s) 159, 205
Bsp68I TCGCGA 1 cut(s) 125
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 273
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 319
BspT104I TTCGAA 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 114
BsrI ACTGG 1 cut(s) 235
BssMI GATC 2 cut(s) 159, 205
BssNI GRCGYC 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 10
BstACI GRCGYC 1 cut(s) 89
BstBI TTCGAA 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 123, 180
BstDEI CTNAG 1 cut(s) 281
BstFNI CGCG 1 cut(s) 125
BstKTI GATC 2 cut(s) 162, 208
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 2 cut(s) 159, 205
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 97, 175, 184
BstNI CCWGG 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 182
BstSCI CCNGG 2 cut(s) 144, 235
BstUI CGCG 1 cut(s) 125
BstV2I GAAGAC 1 cut(s) 4
BsuRI GGCC 1 cut(s) 149
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 2 cut(s) 278, 312
BtuMI TCGCGA 1 cut(s) 125
Cac8I GCNNGC 2 cut(s) 123, 180
Cfr13I GGNCC 4 cut(s) 142, 147, 233, 317
CseI GACGC 1 cut(s) 97
CviAII CATG 1 cut(s) 179
CviJI RGCY 7 cut(s) 100, 121, 149, 157, 169, 187, 273
CviKI_1 RGCY 7 cut(s) 100, 121, 149, 157, 169, 187, 273
DdeI CTNAG 1 cut(s) 281
DpnI GATC 2 cut(s) 161, 207
DpnII GATC 2 cut(s) 159, 205
Eco31I GGTCTC 1 cut(s) 114
Eco47I GGWCC 3 cut(s) 142, 233, 317
Eco88I CYCGRG 1 cut(s) 170
EcoO109I RGGNCCY 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 235
FaeI CATG 1 cut(s) 182
FaiI YATR 4 cut(s) 180, 213, 257, 276
FaqI GGGAC 1 cut(s) 303
FatI CATG 1 cut(s) 178
FblI GTMKAC 1 cut(s) 5
GsaI CCCAGC 1 cut(s) 187
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 145
HgaI GACGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 1 cut(s) 182
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 127
HpaII CCGG 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 114, 132
Hpy188III TCNNGA 3 cut(s) 124, 194, 245
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 2 cut(s) 91, 200
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 2 cut(s) 278, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 175, 184
HpyF3I CTNAG 1 cut(s) 281
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 1 cut(s) 182
Kzo9I GATC 2 cut(s) 159, 205
LpnPI CCDG 6 cut(s) 158, 197, 202, 216, 222, 249
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 199
MalI GATC 2 cut(s) 161, 207
MboI GATC 2 cut(s) 159, 205
MboII GAAGA 4 cut(s) 4, 7, 28, 31
MluCI AATT 2 cut(s) 28, 72
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 5 cut(s) 133, 255, 258, 283, 308
MspI CCGG 1 cut(s) 145
MspR9I CCNGG 2 cut(s) 146, 237
MvaI CCWGG 1 cut(s) 237
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 3 cut(s) 97, 175, 184
NciI CCSGG 1 cut(s) 146
NdeII GATC 2 cut(s) 159, 205
NlaIII CATG 1 cut(s) 182
NlaIV GGNNCC 1 cut(s) 319
NruI TCGCGA 1 cut(s) 125
NspI RCATGY 1 cut(s) 182
NspV TTCGAA 1 cut(s) 26
PaeI GCATGC 1 cut(s) 182
PcsI WCGNNNNNNNCGW 3 cut(s) 83, 168, 201
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PpuMI RGGWCCY 1 cut(s) 317
Psp5II RGGWCCY 1 cut(s) 317
Psp6I CCWGG 1 cut(s) 235
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 319
PspPI GGNCC 4 cut(s) 142, 147, 233, 317
PspPPI RGGWCCY 1 cut(s) 317
RruI TCGCGA 1 cut(s) 125
SalI GTCGAC 1 cut(s) 4
Sau3AI GATC 2 cut(s) 159, 205
Sau96I GGNCC 4 cut(s) 142, 147, 233, 317
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 2 cut(s) 146, 237
SetI ASST 7 cut(s) 189, 201, 221, 238, 269, 275, 319
SfuI TTCGAA 1 cut(s) 26
SinI GGWCC 3 cut(s) 142, 233, 317
SphI GCATGC 1 cut(s) 182
Sse9I AATT 2 cut(s) 28, 72
StyD4I CCNGG 2 cut(s) 144, 235
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 201
TaqI TCGA 4 cut(s) 5, 26, 162, 195
TaqII GACCGA 1 cut(s) 96
TasI AATT 2 cut(s) 28, 72
TscAI CASTG 2 cut(s) 285, 312
TspDTI ATGAA 1 cut(s) 22
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 2 cut(s) 285, 312
VpaK11BI GGWCC 3 cut(s) 142, 233, 317
XapI RAATTY 1 cut(s) 28
XceI RCATGY 1 cut(s) 182
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.