Beta-amylase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G17090 |
| fragaria_vesca | FvH4_5g20800 |
| malus_domestica | MD04G1056200.v1.1 MD06G1043900.v1.1 MD06G1044100.v1.1 |
| prunus_persica | Prupe.5G051000_v2.0.a1 |
| pyrus_communis | pycom04g04940 pycom06g03710 pycom06g03720 |
| rosa_chinensis | RchiOBHm_Chr0c22g0500651 RchiOBHm_Chr7g0206601 RchiOBHm_Chr7g0207461 RchiOBHm_Chr7g0207721 |
| rosa_laevigata | RLG00000003292 |
| rosa_multiflora | Rmu_sc0007645.1_g000004 Rmu_sc0008509.1_g000004 Rmu_sc0008756.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00251200 Rroxscaffold_3G00251330 |
| rosa_rugosa | Rorug06G0115800 Rorug07G0099200 |
| rosa_samantha | Rh7AG231100 Rh7AG231400 Rh7AG232400 Rh7BG227800 Rh7CG246000 Rh7DG238300 Rh7DG238600 |
| rosa_wichuraiana | Rw0G021940 Rw7G019620 Rw7G019900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1259, 1309 |
| AccB1I | GGYRCC | 2 cut(s) | 185, 253 |
| AccII | CGCG | 1 cut(s) | 1151 |
| AccIII | TCCGGA | 1 cut(s) | 1025 |
| AciI | CCGC | 6 cut(s) | 180, 275, 1151, 1154, 1315, 1487 |
| AclI | AACGTT | 1 cut(s) | 732 |
| AclWI | GGATC | 4 cut(s) | 469, 664, 1093, 1144 |
| AcoI | YGGCCR | 2 cut(s) | 931, 1537 |
| AcsI | RAATTY | 3 cut(s) | 744, 833, 1511 |
| AcuI | CTGAAG | 1 cut(s) | 972 |
| AfaI | GTAC | 6 cut(s) | 263, 419, 620, 854, 938, 1022 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 124, 195, 653, 827 |
| AflII | CTTAAG | 1 cut(s) | 1441 |
| AgsI | TTSAA | 9 cut(s) | 24, 346, 362, 472, 749, 970, 1400, 1484, 1511 |
| AjnI | CCWGG | 5 cut(s) | 380, 672, 820, 867, 1011 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 886, 918 |
| AluBI | AGCT | 7 cut(s) | 154, 442, 699, 775, 788, 1033, 1064 |
| AluI | AGCT | 7 cut(s) | 154, 442, 699, 775, 788, 1033, 1064 |
| Alw21I | GWGCWC | 1 cut(s) | 777 |
| Alw26I | GTCTC | 4 cut(s) | 125, 140, 513, 1185 |
| AlwI | GGATC | 4 cut(s) | 469, 664, 1093, 1144 |
| Aor13HI | TCCGGA | 1 cut(s) | 1025 |
| AoxI | GGCC | 4 cut(s) | 339, 407, 931, 1537 |
| ApeKI | GCWGC | 4 cut(s) | 151, 237, 528, 1064 |
| ApoI | RAATTY | 3 cut(s) | 744, 833, 1511 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1632 |
| AspS9I | GGNCC | 3 cut(s) | 407, 761, 917 |
| AsuC2I | CCSGG | 1 cut(s) | 125 |
| AsuHPI | GGTGA | 1 cut(s) | 1290 |
| AvaII | GGWCC | 2 cut(s) | 761, 917 |
| BalI | TGGCCA | 1 cut(s) | 933 |
| BanI | GGYRCC | 2 cut(s) | 185, 253 |
| BanII | GRGCYC | 1 cut(s) | 777 |
| BbsI | GAAGAC | 2 cut(s) | 69, 960 |
| Bbv12I | GWGCWC | 1 cut(s) | 777 |
| BbvI | GCAGC | 4 cut(s) | 163, 249, 540, 1051 |
| BccI | CCATC | 7 cut(s) | 185, 331, 398, 445, 751, 971, 1526 |
| BceAI | ACGGC | 1 cut(s) | 102 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 117, 151 |
| BciT130I | CCWGG | 5 cut(s) | 382, 674, 822, 869, 1013 |
| BcnI | CCSGG | 1 cut(s) | 125 |
| BcoDI | GTCTC | 4 cut(s) | 125, 140, 513, 1185 |
| BfaI | CTAG | 4 cut(s) | 330, 554, 1182, 1310 |
| BfrI | CTTAAG | 1 cut(s) | 1441 |
| BfuAI | ACCTGC | 2 cut(s) | 1259, 1309 |
| BisI | GCNGC | 6 cut(s) | 152, 238, 529, 1065, 1152, 1316 |
| BlpI | GCTNAGC | 1 cut(s) | 438 |
| BlsI | GCNGC | 6 cut(s) | 153, 239, 530, 1066, 1153, 1317 |
| Bme1390I | CCNGG | 6 cut(s) | 125, 382, 674, 822, 869, 1013 |
| Bme18I | GGWCC | 2 cut(s) | 761, 917 |
| BmgT120I | GGNCC | 3 cut(s) | 407, 761, 917 |
| BmiI | GGNNCC | 5 cut(s) | 187, 247, 255, 762, 919 |
| BmrFI | CCNGG | 6 cut(s) | 125, 382, 674, 822, 869, 1013 |
| BmrI | ACTGGG | 3 cut(s) | 433, 899, 1581 |
| BmsI | GCATC | 6 cut(s) | 129, 195, 258, 367, 884, 916 |
| BmuI | ACTGGG | 3 cut(s) | 433, 899, 1581 |
| BpiI | GAAGAC | 2 cut(s) | 69, 960 |
| BpmI | CTGGAG | 2 cut(s) | 375, 1516 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 438 |
| BpuMI | CCSGG | 1 cut(s) | 125 |
| BsaAI | YACGTR | 1 cut(s) | 265 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1141 |
| BsaJI | CCNNGG | 6 cut(s) | 249, 292, 545, 627, 867, 1081 |
| BsaWI | WCCGGW | 2 cut(s) | 959, 1025 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 357, 387, 498, 528 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 124, 195, 653, 827 |
| Bse118I | RCCGGY | 1 cut(s) | 182 |
| Bse1I | ACTGG | 7 cut(s) | 428, 894, 934, 1130, 1393, 1499, 1576 |
| Bse3DI | GCAATG | 5 cut(s) | 247, 327, 641, 808, 1441 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1141 |
| BseAI | TCCGGA | 1 cut(s) | 1025 |
| BseBI | CCWGG | 5 cut(s) | 382, 674, 822, 869, 1013 |
| BseDI | CCNNGG | 6 cut(s) | 249, 292, 545, 627, 867, 1081 |
| BseGI | GGATG | 4 cut(s) | 382, 638, 762, 1470 |
| BseJI | GATNNNNATC | 1 cut(s) | 1141 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 124, 195, 653, 827 |
| BseMI | GCAATG | 5 cut(s) | 247, 327, 641, 808, 1441 |
| BseMII | CTCAG | 5 cut(s) | 429, 606, 790, 984, 1051 |
| BseNI | ACTGG | 7 cut(s) | 428, 894, 934, 1130, 1393, 1499, 1576 |
| BseXI | GCAGC | 4 cut(s) | 163, 249, 540, 1051 |
| BseYI | CCCAGC | 1 cut(s) | 1115 |
| BsgI | GTGCAG | 3 cut(s) | 467, 476, 1266 |
| Bsh1236I | CGCG | 1 cut(s) | 1151 |
| BshFI | GGCC | 4 cut(s) | 341, 409, 933, 1539 |
| BshNI | GGYRCC | 2 cut(s) | 185, 253 |
| BsiHKAI | GWGCWC | 1 cut(s) | 777 |
| BsiSI | CCGG | 6 cut(s) | 124, 183, 960, 1026, 1431, 1540 |
| BslFI | GGGAC | 1 cut(s) | 97 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 124, 195, 653, 827 |
| BsmAI | GTCTC | 4 cut(s) | 125, 140, 513, 1185 |
| BsmBI | CGTCTC | 3 cut(s) | 125, 140, 1185 |
| BsmFI | GGGAC | 1 cut(s) | 97 |
| BsmI | GAATGC | 4 cut(s) | 331, 355, 531, 1372 |
| BsnI | GGCC | 4 cut(s) | 341, 409, 933, 1539 |
| Bsp1286I | GDGCHC | 1 cut(s) | 777 |
| Bsp13I | TCCGGA | 1 cut(s) | 1025 |
| Bsp143I | GATC | 6 cut(s) | 474, 669, 1085, 1136, 1142, 1421 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 438 |
| Bsp19I | CCATGG | 2 cut(s) | 292, 545 |
| BspACI | CCGC | 6 cut(s) | 180, 275, 1151, 1154, 1315, 1487 |
| BspANI | GGCC | 4 cut(s) | 341, 409, 933, 1539 |
| BspCNI | CTCAG | 5 cut(s) | 430, 607, 789, 985, 1050 |
| BspEI | TCCGGA | 1 cut(s) | 1025 |
| BspFNI | CGCG | 1 cut(s) | 1151 |
| BspLI | GGNNCC | 5 cut(s) | 187, 247, 255, 762, 919 |
| BspMI | ACCTGC | 2 cut(s) | 1259, 1309 |
| BspPI | GGATC | 4 cut(s) | 469, 664, 1093, 1144 |
| BspT107I | GGYRCC | 2 cut(s) | 185, 253 |
| BspTI | CTTAAG | 1 cut(s) | 1441 |
| BsrDI | GCAATG | 5 cut(s) | 247, 327, 641, 808, 1441 |
| BsrFI | RCCGGY | 1 cut(s) | 182 |
| BsrI | ACTGG | 7 cut(s) | 428, 894, 934, 1130, 1393, 1499, 1576 |
| BssAI | RCCGGY | 1 cut(s) | 182 |
| BssECI | CCNNGG | 6 cut(s) | 249, 292, 545, 627, 867, 1081 |
| BssMI | GATC | 6 cut(s) | 474, 669, 1085, 1136, 1142, 1421 |
| BssT1I | CCWWGG | 5 cut(s) | 249, 292, 545, 627, 1081 |
| Bst2UI | CCWGG | 5 cut(s) | 382, 674, 822, 869, 1013 |
| Bst4CI | ACNGT | 4 cut(s) | 286, 1005, 1196, 1633 |
| BstAFI | CTTAAG | 1 cut(s) | 1441 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 157, 326, 454 |
| BstBAI | YACGTR | 1 cut(s) | 265 |
| BstC8I | GCNNGC | 4 cut(s) | 184, 931, 1168, 1281 |
| BstDEI | CTNAG | 5 cut(s) | 438, 615, 776, 993, 1037 |
| BstDSI | CCRYGG | 2 cut(s) | 292, 545 |
| BstEII | GGTNACC | 1 cut(s) | 1196 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 825 |
| BstF5I | GGATG | 4 cut(s) | 382, 638, 762, 1470 |
| BstFNI | CGCG | 1 cut(s) | 1151 |
| BstKTI | GATC | 6 cut(s) | 477, 672, 1088, 1139, 1145, 1424 |
| BstMAI | GTCTC | 4 cut(s) | 125, 140, 513, 1185 |
| BstMBI | GATC | 6 cut(s) | 474, 669, 1085, 1136, 1142, 1421 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 148, 157, 326, 454, 1315, 1445 |
| BstNI | CCWGG | 5 cut(s) | 382, 674, 822, 869, 1013 |
| BstNSI | RCATGY | 2 cut(s) | 117, 1289 |
| BstPI | GGTNACC | 1 cut(s) | 1196 |
| BstSCI | CCNGG | 6 cut(s) | 123, 380, 672, 820, 867, 1011 |
| BstUI | CGCG | 1 cut(s) | 1151 |
| BstV1I | GCAGC | 4 cut(s) | 163, 249, 540, 1051 |
| BstV2I | GAAGAC | 2 cut(s) | 69, 960 |
| BstX2I | RGATCY | 2 cut(s) | 474, 1085 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 929, 1088 |
| BstYI | RGATCY | 2 cut(s) | 474, 1085 |
| BsuRI | GGCC | 4 cut(s) | 341, 409, 933, 1539 |
| BtgI | CCRYGG | 2 cut(s) | 292, 545 |
| BtsCI | GGATG | 4 cut(s) | 382, 638, 762, 1470 |
| BtsIMutI | CAGTG | 6 cut(s) | 282, 506, 887, 990, 1123, 1569 |
| BveI | ACCTGC | 2 cut(s) | 1259, 1309 |
| Cac8I | GCNNGC | 4 cut(s) | 184, 931, 1168, 1281 |
| Cfr10I | RCCGGY | 1 cut(s) | 182 |
| Cfr13I | GGNCC | 3 cut(s) | 407, 761, 917 |
| CseI | GACGC | 1 cut(s) | 157 |
| Csp6I | GTAC | 6 cut(s) | 262, 418, 619, 853, 937, 1021 |
| CviQI | GTAC | 6 cut(s) | 262, 418, 619, 853, 937, 1021 |
| DdeI | CTNAG | 5 cut(s) | 438, 615, 776, 993, 1037 |
| DpnI | GATC | 6 cut(s) | 476, 671, 1087, 1138, 1144, 1423 |
| DpnII | GATC | 6 cut(s) | 474, 669, 1085, 1136, 1142, 1421 |
| DraI | TTTAAA | 1 cut(s) | 306 |
| EaeI | YGGCCR | 2 cut(s) | 931, 1537 |
| EciI | GGCGGA | 1 cut(s) | 1169 |
| Ecl136II | GAGCTC | 1 cut(s) | 775 |
| Eco130I | CCWWGG | 5 cut(s) | 249, 292, 545, 627, 1081 |
| Eco24I | GRGCYC | 1 cut(s) | 777 |
| Eco32I | GATATC | 1 cut(s) | 782 |
| Eco47I | GGWCC | 2 cut(s) | 761, 917 |
| Eco53kI | GAGCTC | 1 cut(s) | 775 |
| Eco57I | CTGAAG | 1 cut(s) | 972 |
| Eco91I | GGTNACC | 1 cut(s) | 1196 |
| EcoICRI | GAGCTC | 1 cut(s) | 775 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 825 |
| EcoO109I | RGGNCCY | 1 cut(s) | 761 |
| EcoO65I | GGTNACC | 1 cut(s) | 1196 |
| EcoRI | GAATTC | 1 cut(s) | 833 |
| EcoRII | CCWGG | 5 cut(s) | 380, 672, 820, 867, 1011 |
| EcoRV | GATATC | 1 cut(s) | 782 |
| EcoT14I | CCWWGG | 5 cut(s) | 249, 292, 545, 627, 1081 |
| EcoT22I | ATGCAT | 1 cut(s) | 1372 |
| EcoT38I | GRGCYC | 1 cut(s) | 777 |
| ErhI | CCWWGG | 5 cut(s) | 249, 292, 545, 627, 1081 |
| Esp3I | CGTCTC | 3 cut(s) | 125, 140, 1185 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 452, 484 |
| FaqI | GGGAC | 1 cut(s) | 97 |
| Fnu4HI | GCNGC | 6 cut(s) | 152, 238, 529, 1065, 1152, 1316 |
| FokI | GGATG | 4 cut(s) | 389, 645, 769, 1477 |
| FriOI | GRGCYC | 1 cut(s) | 777 |
| Fsp4HI | GCNGC | 6 cut(s) | 152, 238, 529, 1065, 1152, 1316 |
| FspBI | CTAG | 4 cut(s) | 330, 554, 1182, 1310 |
| GluI | GCNGC | 6 cut(s) | 152, 238, 529, 1065, 1152, 1316 |
| GsaI | CCCAGC | 1 cut(s) | 1119 |
| GsuI | CTGGAG | 2 cut(s) | 375, 1516 |
| HaeIII | GGCC | 4 cut(s) | 341, 409, 933, 1539 |
| HapII | CCGG | 6 cut(s) | 124, 183, 960, 1026, 1431, 1540 |
| HgaI | GACGC | 1 cut(s) | 157 |
| HincII | GTYRAC | 1 cut(s) | 9 |
| HindII | GTYRAC | 1 cut(s) | 9 |
| HindIII | AAGCTT | 1 cut(s) | 697 |
| HinfI | GANTC | 8 cut(s) | 74, 521, 610, 638, 711, 1120, 1427, 1565 |
| HpaI | GTTAAC | 1 cut(s) | 9 |
| HpaII | CCGG | 6 cut(s) | 124, 183, 960, 1026, 1431, 1540 |
| HphI | GGTGA | 1 cut(s) | 1290 |
| Hpy166II | GTNNAC | 5 cut(s) | 9, 262, 586, 679, 917 |
| Hpy188I | TCNGA | 7 cut(s) | 70, 656, 716, 779, 1040, 1426, 1558 |
| Hpy188III | TCNNGA | 7 cut(s) | 614, 794, 950, 1026, 1104, 1140, 1615 |
| Hpy8I | GTNNAC | 5 cut(s) | 9, 262, 586, 679, 917 |
| HpyAV | CCTTC | 6 cut(s) | 189, 356, 420, 422, 1298, 1618 |
| HpyCH4III | ACNGT | 4 cut(s) | 286, 1005, 1196, 1633 |
| HpyCH4IV | ACGT | 4 cut(s) | 5, 26, 264, 732 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 148, 157, 326, 454, 1315, 1445 |
| HpyF3I | CTNAG | 5 cut(s) | 438, 615, 776, 993, 1037 |
| HpySE526I | ACGT | 4 cut(s) | 5, 26, 264, 732 |
| Kpn2I | TCCGGA | 1 cut(s) | 1025 |
| KroI | GCCGGC | 1 cut(s) | 182 |
| KroNI | GCCGGC | 1 cut(s) | 184 |
| KspAI | GTTAAC | 1 cut(s) | 9 |
| Kzo9I | GATC | 6 cut(s) | 474, 669, 1085, 1136, 1142, 1421 |
| LmnI | GCTCC | 2 cut(s) | 772, 1575 |
| Lsp1109I | GCAGC | 4 cut(s) | 163, 249, 540, 1051 |
| LweI | GCATC | 6 cut(s) | 129, 195, 258, 367, 884, 916 |
| MaeI | CTAG | 4 cut(s) | 330, 554, 1182, 1310 |
| MaeII | ACGT | 4 cut(s) | 5, 26, 264, 732 |
| MaeIII | GTNAC | 2 cut(s) | 1196, 1562 |
| MalI | GATC | 6 cut(s) | 476, 671, 1087, 1138, 1144, 1423 |
| MboI | GATC | 6 cut(s) | 474, 669, 1085, 1136, 1142, 1421 |
| MboII | GAAGA | 9 cut(s) | 12, 69, 358, 484, 569, 921, 965, 1000, 1618 |
| MflI | RGATCY | 2 cut(s) | 474, 1085 |
| MhlI | GDGCHC | 1 cut(s) | 777 |
| MlsI | TGGCCA | 1 cut(s) | 933 |
| MluCI | AATT | 8 cut(s) | 87, 744, 833, 1110, 1157, 1291, 1347, 1511 |
| MluNI | TGGCCA | 1 cut(s) | 933 |
| MlyI | GAGTC | 3 cut(s) | 83, 515, 1559 |
| MmeI | TCCRAC | 2 cut(s) | 496, 1536 |
| Mox20I | TGGCCA | 1 cut(s) | 933 |
| Mph1103I | ATGCAT | 1 cut(s) | 1372 |
| MroI | TCCGGA | 1 cut(s) | 1025 |
| MroNI | GCCGGC | 1 cut(s) | 182 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1632 |
| MscI | TGGCCA | 1 cut(s) | 933 |
| MseI | TTAA | 7 cut(s) | 8, 42, 173, 305, 1160, 1241, 1442 |
| MslI | CAYNNNNRTG | 2 cut(s) | 501, 1259 |
| Msp20I | TGGCCA | 1 cut(s) | 933 |
| MspA1I | CMGCKG | 1 cut(s) | 1064 |
| MspCI | CTTAAG | 1 cut(s) | 1441 |
| MspI | CCGG | 6 cut(s) | 124, 183, 960, 1026, 1431, 1540 |
| MspR9I | CCNGG | 6 cut(s) | 125, 382, 674, 822, 869, 1013 |
| Mva1269I | GAATGC | 4 cut(s) | 331, 355, 531, 1372 |
| MvaI | CCWGG | 5 cut(s) | 382, 674, 822, 869, 1013 |
| MvnI | CGCG | 1 cut(s) | 1151 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 148, 157, 326, 454, 1315, 1445 |
| NaeI | GCCGGC | 1 cut(s) | 184 |
| NciI | CCSGG | 1 cut(s) | 125 |
| NcoI | CCATGG | 2 cut(s) | 292, 545 |
| NdeII | GATC | 6 cut(s) | 474, 669, 1085, 1136, 1142, 1421 |
| NgoMIV | GCCGGC | 1 cut(s) | 182 |
| NlaIV | GGNNCC | 5 cut(s) | 187, 247, 255, 762, 919 |
| NmuCI | GTSAC | 1 cut(s) | 1562 |
| NsiI | ATGCAT | 1 cut(s) | 1372 |
| NspI | RCATGY | 2 cut(s) | 117, 1289 |
| PctI | GAATGC | 4 cut(s) | 331, 355, 531, 1372 |
| PdiI | GCCGGC | 1 cut(s) | 184 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1632 |
| PfeI | GAWTC | 5 cut(s) | 610, 638, 711, 1120, 1427 |
| PfoI | TCCNGGA | 2 cut(s) | 820, 1011 |
| PkrI | GCNGC | 6 cut(s) | 153, 239, 530, 1066, 1153, 1317 |
| PleI | GAGTC | 3 cut(s) | 82, 515, 1559 |
| PpsI | GAGTC | 3 cut(s) | 82, 515, 1559 |
| Ppu21I | YACGTR | 1 cut(s) | 265 |
| PpuMI | RGGWCCY | 1 cut(s) | 761 |
| Psp124BI | GAGCTC | 1 cut(s) | 777 |
| Psp1406I | AACGTT | 1 cut(s) | 732 |
| Psp5II | RGGWCCY | 1 cut(s) | 761 |
| Psp6I | CCWGG | 5 cut(s) | 380, 672, 820, 867, 1011 |
| PspEI | GGTNACC | 1 cut(s) | 1196 |
| PspFI | CCCAGC | 1 cut(s) | 1115 |
| PspGI | CCWGG | 5 cut(s) | 380, 672, 820, 867, 1011 |
| PspN4I | GGNNCC | 5 cut(s) | 187, 247, 255, 762, 919 |
| PspPI | GGNCC | 3 cut(s) | 407, 761, 917 |
| PspPPI | RGGWCCY | 1 cut(s) | 761 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 989, 1021 |
| PsuI | RGATCY | 2 cut(s) | 474, 1085 |
| PvuII | CAGCTG | 1 cut(s) | 1064 |
| RsaI | GTAC | 6 cut(s) | 263, 419, 620, 854, 938, 1022 |
| RsaNI | GTAC | 6 cut(s) | 262, 418, 619, 853, 937, 1021 |
| RseI | CAYNNNNRTG | 2 cut(s) | 501, 1259 |
| SacI | GAGCTC | 1 cut(s) | 777 |
| SaqAI | TTAA | 7 cut(s) | 8, 42, 173, 305, 1160, 1241, 1442 |
| SatI | GCNGC | 6 cut(s) | 152, 238, 529, 1065, 1152, 1316 |
| Sau3AI | GATC | 6 cut(s) | 474, 669, 1085, 1136, 1142, 1421 |
| Sau96I | GGNCC | 3 cut(s) | 407, 761, 917 |
| SchI | GAGTC | 3 cut(s) | 83, 515, 1559 |
| ScrFI | CCNGG | 6 cut(s) | 125, 382, 674, 822, 869, 1013 |
| SduI | GDGCHC | 1 cut(s) | 777 |
| SfaNI | GCATC | 6 cut(s) | 129, 195, 258, 367, 884, 916 |
| SinI | GGWCC | 2 cut(s) | 761, 917 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 501, 1259 |
| SmlI | CTYRAG | 1 cut(s) | 1441 |
| SmoI | CTYRAG | 1 cut(s) | 1441 |
| Sse9I | AATT | 8 cut(s) | 87, 744, 833, 1110, 1157, 1291, 1347, 1511 |
| SsiI | CCGC | 6 cut(s) | 180, 275, 1151, 1154, 1315, 1487 |
| SspI | AATATT | 1 cut(s) | 226 |
| SspMI | CTAG | 4 cut(s) | 330, 554, 1182, 1310 |
| SstI | GAGCTC | 1 cut(s) | 777 |
| StyD4I | CCNGG | 6 cut(s) | 123, 380, 672, 820, 867, 1011 |
| StyI | CCWWGG | 5 cut(s) | 249, 292, 545, 627, 1081 |
| TaaI | ACNGT | 4 cut(s) | 286, 1005, 1196, 1633 |
| TaiI | ACGT | 4 cut(s) | 8, 29, 267, 735 |
| TaqI | TCGA | 1 cut(s) | 137 |
| TasI | AATT | 8 cut(s) | 87, 744, 833, 1110, 1157, 1291, 1347, 1511 |
| TatI | WGTACW | 4 cut(s) | 417, 618, 852, 936 |
| TauI | GCSGC | 2 cut(s) | 1154, 1318 |
| TfiI | GAWTC | 5 cut(s) | 610, 638, 711, 1120, 1427 |
| Tru1I | TTAA | 7 cut(s) | 8, 42, 173, 305, 1160, 1241, 1442 |
| Tru9I | TTAA | 7 cut(s) | 8, 42, 173, 305, 1160, 1241, 1442 |
| TscAI | CASTG | 6 cut(s) | 289, 506, 894, 997, 1130, 1576 |
| TseFI | GTSAC | 1 cut(s) | 1562 |
| TseI | GCWGC | 4 cut(s) | 151, 237, 528, 1064 |
| Tsp45I | GTSAC | 1 cut(s) | 1562 |
| TspDTI | ATGAA | 9 cut(s) | 22, 200, 338, 485, 584, 630, 1277, 1481, 1585 |
| TspGWI | ACGGA | 1 cut(s) | 1477 |
| TspRI | CASTG | 6 cut(s) | 289, 506, 894, 997, 1130, 1576 |
| Vha464I | CTTAAG | 1 cut(s) | 1441 |
| VpaK11BI | GGWCC | 2 cut(s) | 761, 917 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 825 |
| XapI | RAATTY | 3 cut(s) | 744, 833, 1511 |
| XceI | RCATGY | 2 cut(s) | 117, 1289 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1632 |
| XspI | CTAG | 4 cut(s) | 330, 554, 1182, 1310 |
| Zsp2I | ATGCAT | 1 cut(s) | 1372 |