Rroxscaffold_3G00251330

Beta-amylase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
45259683 .. 45262895
3213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00251330.1

Sequence Viewer

Length: 1257 bp
ATGACGTTAACGCTTCGTTCTTCAACGTCTTTCATTAATCTTAAAGAGTACTCCAAAAGCCTGAAGAGCTCCGATGAATCCTCCGGTGTAGTTTGCTTTGCGCAAATCAAGCCATCATGCCGCATCCGGGCAAAGAGTTCCCTCACTTCCCTGCAAGAAGCACAGCCCTTCCAGGAAAGAATCAGGGTGAGCACCACCACTGATGATCTCCCGAGGGAGTTGCTTCATGCACTCCCAAATATAGCTCATACCAGCAATAACAACGACTCCAAGAAGGTGCCTGTGTATGTGATGCTTCCACTAGACACAGTGACGCATGGAGGGCATTTGAACAAGCCAAGAGCAATGAATGTGAGTTTGATGGCTTTGAAGAATGCAGGAGTAGAAGGAGTTATGGTGGATGCTTGGTGGGGATTGGTCGAGAAAGACGGACCTTCCAAGTACAACTGGGAAGGGTATGCTGAGCTTGTGAACTTGGCCCAAAAGCATGGCTTGAAGATTCAAGTTGTCATGTCTTTCCATCAGTGCGGAGGAAATGTTGGAGACTCATGCAGTATTCCACTGCCTCCATGGGTGCTTGAAGAGATAAGCAAGAACCCTGACCTTGTGTACACAGACAAATCTGGCAGAAGGAATCCTGAGTACATATCCTTGGGCTGTGATTCATTGCCTGTTCTCGGAGGAAGAACGCCCATCCAGGTTTACACCGACTACATGAAGAGCTTCCATGACAGATTCAGAGATTACTTGGGAGATGTTATTGTGGAACTTGTTTTTAAAAGGTTAGACTCAATTTCAACTGTTTCTGCAGGAAATTCAAGTCGGTATGCGGGTATGGGTCCTTGTGGTGAACTCAGATATCCTGCTTATCCAGAGAGCAATGGAACATGGAAGTTTCCCGGAATTGGAGAATTTCAAAGCTATGACAAGTACATGAAAGCTTCCCTGGAATCATCAGCAGAGGCACAAGGAAAGAGAGATTGGGGAAGGACTGGACCCCATGATTCCGGCCAGTACAATCTGTTCCCTGAAGACACCGGATTTTTCAAAAGAAATGGAACCTGGAATACCGAGTATGGACAGTTCTTTCTCGAATGGTACTCAGAGAAGCTATTAAGGCACGGAGATAGACTCCTGGCAGCTGCAAAAGGAATGTTCCAAGGAACTGAAGCTAAACTATCTGGAAAGGTAGCTGGGATTCATTGGCACTACAGAACAAGATCCCATGCTGCTGAATTAACTGCTGGGCTACTATAA

Protein Analysis

418

Amino Acids

46.64

Weight (kDa)

8.36

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_14 PF01373 96 - 416 1.3e-144 Glycosyl hydrolase family 14
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 102
AccB1I GGYRCC 1 cut(s) 277
AciI CCGC 3 cut(s) 121, 528, 830
AclWI GGATC 1 cut(s) 1215
AcoI YGGCCR 1 cut(s) 1009
AcsI RAATTY 2 cut(s) 814, 911
AcuI CTGAAG 3 cut(s) 83, 1050, 1188
AfaI GTAC 7 cut(s) 50, 443, 611, 644, 932, 1016, 1100
AfiI CCNNNNNNNGG 3 cut(s) 127, 677, 905
AjnI CCWGG 5 cut(s) 171, 696, 945, 1061, 1134
AjuI GAANNNNNNNTTGG 2 cut(s) 964, 996
Alw21I GWGCWC 2 cut(s) 71, 194
Alw26I GTCTC 1 cut(s) 537
AlwI GGATC 1 cut(s) 1215
Ama87I CYCGRG 1 cut(s) 211
AoxI GGCC 2 cut(s) 477, 1009
ApeKI GCWGC 3 cut(s) 1139, 1142, 1229
ApoI RAATTY 2 cut(s) 814, 911
AseI ATTAAT 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 722
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 4 cut(s) 431, 478, 839, 995
AsuC2I CCSGG 2 cut(s) 128, 900
AsuHPI GGTGA 2 cut(s) 199, 860
AvaI CYCGRG 1 cut(s) 211
AvaII GGWCC 3 cut(s) 431, 839, 995
BanI GGYRCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 1038
Bbv12I GWGCWC 2 cut(s) 71, 194
BbvI GCAGC 3 cut(s) 1129, 1151, 1216
BccI CCATC 4 cut(s) 121, 355, 528, 701
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 5 cut(s) 173, 698, 947, 1063, 1136
BcnI CCSGG 2 cut(s) 128, 900
BcoDI GTCTC 1 cut(s) 537
BfaI CTAG 1 cut(s) 302
BfmI CTRYAG 2 cut(s) 807, 1210
BisI GCNGC 4 cut(s) 121, 1140, 1143, 1230
BlpI GCTNAGC 1 cut(s) 462
BlsI GCNGC 4 cut(s) 122, 1141, 1144, 1231
BmcAI AGTACT 1 cut(s) 50
Bme1390I CCNGG 7 cut(s) 128, 173, 698, 900, 947, 1063, 1136
Bme18I GGWCC 3 cut(s) 431, 839, 995
BmeT110I CYCGRG 1 cut(s) 211
BmgT120I GGNCC 4 cut(s) 431, 478, 839, 995
BmiI GGNNCC 4 cut(s) 279, 840, 997, 1060
BmrFI CCNGG 7 cut(s) 128, 173, 698, 900, 947, 1063, 1136
BmrI ACTGGG 1 cut(s) 457
BmsI GCATC 3 cut(s) 132, 282, 391
BmuI ACTGGG 1 cut(s) 457
BpiI GAAGAC 1 cut(s) 1038
BplI GAGNNNNNCTC 2 cut(s) 1116, 1148
Bpu1102I GCTNAGC 1 cut(s) 462
BpuMI CCSGG 2 cut(s) 128, 900
BsaJI CCNNGG 5 cut(s) 212, 569, 651, 945, 1159
BsaWI WCCGGW 2 cut(s) 83, 1037
BsaXI ACNNNNNCTCC 6 cut(s) 251, 281, 381, 411, 522, 552
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 677, 905
Bse1I ACTGG 3 cut(s) 452, 997, 1012
Bse3DI GCAATG 3 cut(s) 351, 665, 886
BseBI CCWGG 5 cut(s) 173, 698, 947, 1063, 1136
BseDI CCNNGG 5 cut(s) 212, 569, 651, 945, 1159
BseGI GGATG 3 cut(s) 123, 406, 693
BseLI CCNNNNNNNGG 3 cut(s) 127, 677, 905
BseMI GCAATG 3 cut(s) 351, 665, 886
BseMII CTCAG 4 cut(s) 453, 630, 868, 1116
BseNI ACTGG 3 cut(s) 452, 997, 1012
BseXI GCAGC 3 cut(s) 1129, 1151, 1216
BseYI CCCAGC 2 cut(s) 1193, 1244
BshFI GGCC 2 cut(s) 479, 1011
BshNI GGYRCC 1 cut(s) 277
BsiHKAI GWGCWC 2 cut(s) 71, 194
BsiHKCI CYCGRG 1 cut(s) 211
BsiSI CCGG 5 cut(s) 84, 127, 900, 1008, 1038
BslI CCNNNNNNNGG 3 cut(s) 127, 677, 905
BsmAI GTCTC 1 cut(s) 537
BsmI GAATGC 1 cut(s) 379
BsnI GGCC 2 cut(s) 479, 1011
BsoBI CYCGRG 1 cut(s) 211
Bsp1286I GDGCHC 2 cut(s) 71, 194
Bsp1407I TGTACA 1 cut(s) 609
Bsp143I GATC 2 cut(s) 205, 1220
Bsp1720I GCTNAGC 1 cut(s) 462
Bsp19I CCATGG 1 cut(s) 569
BspACI CCGC 3 cut(s) 121, 528, 830
BspANI GGCC 2 cut(s) 479, 1011
BspCNI CTCAG 4 cut(s) 454, 631, 867, 1115
BspLI GGNNCC 4 cut(s) 279, 840, 997, 1060
BspMAI CTGCAG 1 cut(s) 811
BspPI GGATC 1 cut(s) 1215
BspQI GCTCTTC 2 cut(s) 59, 713
BspT107I GGYRCC 1 cut(s) 277
BsrDI GCAATG 3 cut(s) 351, 665, 886
BsrGI TGTACA 1 cut(s) 609
BsrI ACTGG 3 cut(s) 452, 997, 1012
BssECI CCNNGG 5 cut(s) 212, 569, 651, 945, 1159
BssMI GATC 2 cut(s) 205, 1220
BssT1I CCWWGG 3 cut(s) 569, 651, 1159
Bst2UI CCWGG 5 cut(s) 173, 698, 947, 1063, 1136
Bst4CI ACNGT 3 cut(s) 310, 802, 1083
Bst6I CTCTTC 3 cut(s) 59, 576, 713
BstAUI TGTACA 1 cut(s) 609
BstDEI CTNAG 4 cut(s) 462, 639, 854, 1102
BstDSI CCRYGG 1 cut(s) 569
BstF5I GGATG 3 cut(s) 123, 406, 693
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 2 cut(s) 208, 1223
BstMAI GTCTC 1 cut(s) 537
BstMBI GATC 2 cut(s) 205, 1220
BstMWI GCNNNNNNNGC 4 cut(s) 66, 109, 322, 1117
BstNI CCWGG 5 cut(s) 173, 698, 947, 1063, 1136
BstSCI CCNGG 7 cut(s) 126, 171, 696, 898, 945, 1061, 1134
BstSFI CTRYAG 2 cut(s) 807, 1210
BstV1I GCAGC 3 cut(s) 1129, 1151, 1216
BstV2I GAAGAC 1 cut(s) 1038
BstX2I RGATCY 1 cut(s) 1220
BstXI CCANNNNNNTGG 1 cut(s) 488
BstYI RGATCY 1 cut(s) 1220
BsuRI GGCC 2 cut(s) 479, 1011
BtgI CCRYGG 1 cut(s) 569
BtsCI GGATG 3 cut(s) 123, 406, 693
BtsI GCAGTG 1 cut(s) 560
BtsIMutI CAGTG 4 cut(s) 198, 315, 530, 560
CfoI GCGC 1 cut(s) 103
Cfr13I GGNCC 4 cut(s) 431, 478, 839, 995
CseI GACGC 1 cut(s) 322
Csp6I GTAC 7 cut(s) 49, 442, 610, 643, 931, 1015, 1099
CviQI GTAC 7 cut(s) 49, 442, 610, 643, 931, 1015, 1099
DdeI CTNAG 4 cut(s) 462, 639, 854, 1102
DpnI GATC 2 cut(s) 207, 1222
DpnII GATC 2 cut(s) 205, 1220
DraI TTTAAA 1 cut(s) 778
EaeI YGGCCR 1 cut(s) 1009
Eam1104I CTCTTC 3 cut(s) 59, 576, 713
EarI CTCTTC 3 cut(s) 59, 576, 713
Ecl136II GAGCTC 1 cut(s) 69
Eco130I CCWWGG 3 cut(s) 569, 651, 1159
Eco24I GRGCYC 1 cut(s) 71
Eco32I GATATC 1 cut(s) 860
Eco47I GGWCC 3 cut(s) 431, 839, 995
Eco53kI GAGCTC 1 cut(s) 69
Eco57I CTGAAG 3 cut(s) 83, 1050, 1188
Eco88I CYCGRG 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 69
EcoO109I RGGNCCY 1 cut(s) 839
EcoRII CCWGG 5 cut(s) 171, 696, 945, 1061, 1134
EcoRV GATATC 1 cut(s) 860
EcoT14I CCWWGG 3 cut(s) 569, 651, 1159
EcoT38I GRGCYC 1 cut(s) 71
ErhI CCWWGG 3 cut(s) 569, 651, 1159
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FauI CCCGC 1 cut(s) 823
Fnu4HI GCNGC 4 cut(s) 121, 1140, 1143, 1230
FokI GGATG 3 cut(s) 110, 413, 680
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 4 cut(s) 121, 1140, 1143, 1230
FspBI CTAG 1 cut(s) 302
FspI TGCGCA 1 cut(s) 102
GlaI GCGC 1 cut(s) 102
GluI GCNGC 4 cut(s) 121, 1140, 1143, 1230
GsaI CCCAGC 2 cut(s) 1197, 1248
HaeIII GGCC 2 cut(s) 479, 1011
HapII CCGG 5 cut(s) 84, 127, 900, 1008, 1038
HgaI GACGC 1 cut(s) 322
HhaI GCGC 1 cut(s) 103
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 939
HpaI GTTAAC 1 cut(s) 9
HpaII CCGG 5 cut(s) 84, 127, 900, 1008, 1038
HphI GGTGA 2 cut(s) 199, 860
Hpy166II GTNNAC 6 cut(s) 9, 472, 610, 612, 703, 851
Hpy188I TCNGA 5 cut(s) 73, 680, 740, 857, 1105
Hpy188III TCNNGA 6 cut(s) 211, 421, 638, 872, 1091, 1182
Hpy8I GTNNAC 6 cut(s) 9, 472, 610, 612, 703, 851
HpyAV CCTTC 7 cut(s) 178, 268, 380, 444, 446, 624, 981
HpyCH4III ACNGT 3 cut(s) 310, 802, 1083
HpyCH4IV ACGT 2 cut(s) 5, 26
HpyCH4V TGCA 6 cut(s) 154, 230, 377, 552, 809, 1145
HpyF10VI GCNNNNNNNGC 4 cut(s) 66, 109, 322, 1117
HpyF3I CTNAG 4 cut(s) 462, 639, 854, 1102
HpySE526I ACGT 2 cut(s) 5, 26
HspAI GCGC 1 cut(s) 101
KspAI GTTAAC 1 cut(s) 9
Kzo9I GATC 2 cut(s) 205, 1220
LguI GCTCTTC 2 cut(s) 59, 713
LmnI GCTCC 1 cut(s) 74
Lsp1109I GCAGC 3 cut(s) 1129, 1151, 1216
LweI GCATC 3 cut(s) 132, 282, 391
MaeI CTAG 1 cut(s) 302
MaeII ACGT 2 cut(s) 5, 26
MaeIII GTNAC 1 cut(s) 310
MalI GATC 2 cut(s) 207, 1222
MboI GATC 2 cut(s) 205, 1220
MboII GAAGA 8 cut(s) 12, 76, 382, 508, 593, 696, 730, 1043
MflI RGATCY 1 cut(s) 1220
MhlI GDGCHC 2 cut(s) 71, 194
MluCI AATT 5 cut(s) 792, 814, 903, 911, 1235
MlyI GAGTC 4 cut(s) 260, 539, 782, 1125
MmeI TCCRAC 1 cut(s) 520
MnlI CCTC 8 cut(s) 91, 152, 207, 314, 524, 576, 674, 955
MroXI GAANNNNTTC 1 cut(s) 722
MseI TTAA 6 cut(s) 8, 36, 42, 777, 1115, 1238
MspA1I CMGCKG 1 cut(s) 1142
MspI CCGG 5 cut(s) 84, 127, 900, 1008, 1038
MspR9I CCNGG 7 cut(s) 128, 173, 698, 900, 947, 1063, 1136
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 5 cut(s) 173, 698, 947, 1063, 1136
MwoI GCNNNNNNNGC 4 cut(s) 66, 109, 322, 1117
NciI CCSGG 2 cut(s) 128, 900
NcoI CCATGG 1 cut(s) 569
NdeII GATC 2 cut(s) 205, 1220
NlaIV GGNNCC 4 cut(s) 279, 840, 997, 1060
NmuCI GTSAC 1 cut(s) 310
NsbI TGCGCA 1 cut(s) 102
PciSI GCTCTTC 2 cut(s) 59, 713
PctI GAATGC 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 722
PfeI GAWTC 9 cut(s) 77, 180, 499, 634, 662, 735, 950, 1004, 1198
PfoI TCCNGGA 2 cut(s) 171, 898
PkrI GCNGC 4 cut(s) 122, 1141, 1144, 1231
PleI GAGTC 4 cut(s) 260, 539, 782, 1125
PpsI GAGTC 4 cut(s) 260, 539, 782, 1125
PpuMI RGGWCCY 1 cut(s) 839
PshBI ATTAAT 1 cut(s) 36
Psp124BI GAGCTC 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 839
Psp6I CCWGG 5 cut(s) 171, 696, 945, 1061, 1134
PspFI CCCAGC 2 cut(s) 1193, 1244
PspGI CCWGG 5 cut(s) 171, 696, 945, 1061, 1134
PspN4I GGNNCC 4 cut(s) 279, 840, 997, 1060
PspPI GGNCC 4 cut(s) 431, 478, 839, 995
PspPPI RGGWCCY 1 cut(s) 839
PsrI GAACNNNNNNTAC 6 cut(s) 1007, 1039, 1051, 1067, 1083, 1099
PstI CTGCAG 1 cut(s) 811
PsuI RGATCY 1 cut(s) 1220
PvuII CAGCTG 1 cut(s) 1142
RsaI GTAC 7 cut(s) 50, 443, 611, 644, 932, 1016, 1100
RsaNI GTAC 7 cut(s) 49, 442, 610, 643, 931, 1015, 1099
SacI GAGCTC 1 cut(s) 71
SapI GCTCTTC 2 cut(s) 59, 713
SaqAI TTAA 6 cut(s) 8, 36, 42, 777, 1115, 1238
SatI GCNGC 4 cut(s) 121, 1140, 1143, 1230
Sau3AI GATC 2 cut(s) 205, 1220
Sau96I GGNCC 4 cut(s) 431, 478, 839, 995
ScaI AGTACT 1 cut(s) 50
SchI GAGTC 4 cut(s) 260, 539, 782, 1125
ScrFI CCNGG 7 cut(s) 128, 173, 698, 900, 947, 1063, 1136
SduI GDGCHC 2 cut(s) 71, 194
SfaNI GCATC 3 cut(s) 132, 282, 391
SfcI CTRYAG 2 cut(s) 807, 1210
SinI GGWCC 3 cut(s) 431, 839, 995
Sse9I AATT 5 cut(s) 792, 814, 903, 911, 1235
SsiI CCGC 3 cut(s) 121, 528, 830
SspMI CTAG 1 cut(s) 302
SstI GAGCTC 1 cut(s) 71
StyD4I CCNGG 7 cut(s) 126, 171, 696, 898, 945, 1061, 1134
StyI CCWWGG 3 cut(s) 569, 651, 1159
TaaI ACNGT 3 cut(s) 310, 802, 1083
TaiI ACGT 2 cut(s) 8, 29
TaqI TCGA 2 cut(s) 420, 1092
TasI AATT 5 cut(s) 792, 814, 903, 911, 1235
TatI WGTACW 6 cut(s) 48, 441, 609, 642, 930, 1014
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 9 cut(s) 77, 180, 499, 634, 662, 735, 950, 1004, 1198
Tru1I TTAA 6 cut(s) 8, 36, 42, 777, 1115, 1238
Tru9I TTAA 6 cut(s) 8, 36, 42, 777, 1115, 1238
TscAI CASTG 4 cut(s) 205, 315, 530, 567
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 3 cut(s) 1139, 1142, 1229
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 8 cut(s) 22, 90, 215, 362, 654, 731, 950, 1190
TspGWI ACGGA 2 cut(s) 444, 1137
TspRI CASTG 4 cut(s) 205, 315, 530, 567
VpaK11BI GGWCC 3 cut(s) 431, 839, 995
VspI ATTAAT 1 cut(s) 36
XapI RAATTY 2 cut(s) 814, 911
XcmI CCANNNNNNNNNTGG 1 cut(s) 567
XmnI GAANNNNTTC 1 cut(s) 722
XspI CTAG 1 cut(s) 302
ZrmI AGTACT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.