Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004661

Physical Location & Seq

Genomic Coordinates Reverse (-)

7813990 .. 7816267

Gene Structure 2278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0099200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTTGGGTCTTATACACACATTCCTGAACCTCTCAGCTCCCCCATTCACCTTCTTCTCCCTCTTGCTTCTCCTACCGCCGCTTTATCTCTTCAAGTTCTTCACCTTTCTCTTGAGCACCATCTTCAGCGAAAGTGTCGCCGGCAAGGTCGTCCTCATCACCGGTGCCTCCTCCGGTATCGGCGAGCACTTGGCTTATGAGTATGCAAGGAGAGGGGCACGATTGGCCCTAGTTGGCAGGAGAGAAAACGCGCTAAGGGAAGTCGTTGATCGAGCAGCTCAGTGTGGCTCTCCAGAGGTTATTATGATTGGGGCTGATGTTTCAAAGGCTGAGGACTGCAAGAGACTTGTTGATGAAACTATCAACCACTTCGGAAGGTTGGACCATCTGGTGAATAATGCTGGGATCACTACTTGTAGCATGTTGGAAGATGTCACCGATATCACAAATTTCAGATCCGTAATGGATACAAACTTCTGGGGATCCGTCTATACCACTCATTTTGCAGCTCCACACCTCAGAAACAACAAAGGTAGAATCGTGGTGCTTTCTTCCGTTAATGCATGGTTGCCTGTGCCAAGAATGAGCATATACAATGCAAGTAAAGCAGCTATGTTGAGCATGTTTGAGACACTGAGGGTTGAATTTGGGCCAGAAGTTCATATAACAATCGTGACTCCCGGATACATAGAGTCTGAGATGAACAAAGGCAAATACTTATCGCCCGAAGGCAAGATGACCGTAGATCAAGAAATGAGGGATGTTCAAGTTAGCGCAATTCCTGTTGAAAGAGTGCAAGAATGCGCGAATGCAATTGTGAACAGTGTTTGTCGTGGACAAAGGTGCTTGACAGAGCCAGCATGGTATAAAGTCATATATACGTGGAAGGTGTTCTGCCCTGAGCTACTCGAATGGGGTTACAAATTTTTCTACATGGCTAGGCCTGGGGCTCCTGCTAATGAAGCACCTAGCAAAGATATCTTGGACTACACCGGCGTGAAGAATGTCCTGTACCCCGAGTCCCTCCACAATCCTGAGATCAAGACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

350

Amino Acids

39.21

Weight (kDa)

6.27

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	49 - 237	7.5e-50	short chain dehydrogenase
KR	PF08659	51 - 212	7e-13	KR domain
adh_short_C2	PF13561	55 - 271	1.2e-36	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17090
fragaria_vesca	FvH4_5g20800
malus_domestica	MD04G1056200.v1.1 MD06G1043900.v1.1 MD06G1044100.v1.1
prunus_persica	Prupe.5G051000_v2.0.a1
pyrus_communis	pycom04g04940 pycom06g03710 pycom06g03720
rosa_chinensis	RchiOBHm_Chr0c22g0500651 RchiOBHm_Chr7g0206601 RchiOBHm_Chr7g0207461 RchiOBHm_Chr7g0207721
rosa_laevigata	RLG00000003292
rosa_multiflora	Rmu_sc0007645.1_g000004 Rmu_sc0008509.1_g000004 Rmu_sc0008756.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251200 Rroxscaffold_3G00251330
rosa_rugosa	Rorug06G0115800 Rorug07G0099200
rosa_samantha	Rh7AG231100 Rh7AG231400 Rh7AG232400 Rh7BG227800 Rh7CG246000 Rh7DG238300 Rh7DG238600
rosa_wichuraiana	Rw0G021940 Rw7G019620 Rw7G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccII	CGCG	2 cut(s)	251, 806
AciI	CCGC	2 cut(s)	77, 80
AclWI	GGATC	4 cut(s)	413, 450, 477, 490
AcsI	RAATTY	3 cut(s)	448, 644, 923
AcuI	CTGAAG	1 cut(s)	109
AfaI	GTAC	1 cut(s)	1013
AgeI	ACCGGT	1 cut(s)	161
AgsI	TTSAA	5 cut(s)	94, 324, 644, 767, 788
AjnI	CCWGG	1 cut(s)	943
AleI	CACNNNNGTG	1 cut(s)	995
AluBI	AGCT	5 cut(s)	38, 278, 509, 611, 904
AluI	AGCT	5 cut(s)	38, 278, 509, 611, 904
Alw21I	GWGCWC	2 cut(s)	119, 189
Alw26I	GTCTC	2 cut(s)	337, 623
AlwI	GGATC	4 cut(s)	413, 450, 477, 490
Ama87I	CYCGRG	1 cut(s)	1016
AoxI	GGCC	3 cut(s)	225, 650, 941
ApeKI	GCWGC	3 cut(s)	275, 506, 608
ApoI	RAATTY	3 cut(s)	448, 644, 923
AsiGI	ACCGGT	1 cut(s)	161
Asp700I	GAANNNNTTC	1 cut(s)	890
AspLEI	GCGC	3 cut(s)	253, 776, 806
AspS9I	GGNCC	3 cut(s)	226, 382, 650
AsuC2I	CCSGG	1 cut(s)	681
AsuHPI	GGTGA	5 cut(s)	40, 94, 151, 403, 427
AvaI	CYCGRG	1 cut(s)	1016
AvaII	GGWCC	1 cut(s)	382
BaeGI	GKGCMC	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	482
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	952
Bbv12I	GWGCWC	2 cut(s)	119, 189
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	3 cut(s)	287, 518, 620
BccI	CCATC	2 cut(s)	128, 393
BciT130I	CCWGG	1 cut(s)	945
BciVI	GTATCC	2 cut(s)	460, 677
BcnI	CCSGG	1 cut(s)	681
BcoDI	GTCTC	2 cut(s)	337, 623
BfaI	CTAG	3 cut(s)	230, 939, 969
BfuI	GTATCC	2 cut(s)	460, 677
BisI	GCNGC	4 cut(s)	80, 276, 507, 609
BlsI	GCNGC	4 cut(s)	81, 277, 508, 610
Bme1390I	CCNGG	2 cut(s)	681, 945
Bme18I	GGWCC	1 cut(s)	382
BmeT110I	CYCGRG	1 cut(s)	1016
BmgT120I	GGNCC	3 cut(s)	226, 382, 650
BmiI	GGNNCC	3 cut(s)	166, 484, 951
BmrFI	CCNGG	2 cut(s)	681, 945
BpmI	CTGGAG	1 cut(s)	276
Bpu10I	CCTNAGC	3 cut(s)	254, 330, 900
BpuEI	CTTGAG	1 cut(s)	133
BpuMI	CCSGG	1 cut(s)	681
BsaAI	YACGTR	1 cut(s)	882
BsaJI	CCNNGG	1 cut(s)	944
BsaWI	WCCGGW	2 cut(s)	161, 173
Bse118I	RCCGGY	3 cut(s)	140, 161, 992
BseBI	CCWGG	1 cut(s)	945
BseDI	CCNNGG	1 cut(s)	944
BseGI	GGATG	1 cut(s)	766
BseMII	CTCAG	8 cut(s)	48, 293, 321, 532, 626, 687, 891, 1026
BseRI	GAGGAG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	3 cut(s)	287, 518, 620
BseYI	CCCAGC	1 cut(s)	401
Bsh1236I	CGCG	2 cut(s)	251, 806
BshFI	GGCC	3 cut(s)	227, 652, 943
BshNI	GGYRCC	1 cut(s)	164
BshTI	ACCGGT	1 cut(s)	161
BsiHKAI	GWGCWC	2 cut(s)	119, 189
BsiHKCI	CYCGRG	1 cut(s)	1016
BsiSI	CCGG	5 cut(s)	141, 162, 174, 681, 993
BslFI	GGGAC	1 cut(s)	1006
BsmAI	GTCTC	2 cut(s)	337, 623
BsmFI	GGGAC	1 cut(s)	1006
BsmI	GAATGC	2 cut(s)	806, 814
BsnI	GGCC	3 cut(s)	227, 652, 943
BsoBI	CYCGRG	1 cut(s)	1016
Bsp1286I	GDGCHC	4 cut(s)	119, 189, 220, 952
Bsp143I	GATC	6 cut(s)	268, 405, 455, 482, 745, 1038
BspACI	CCGC	2 cut(s)	77, 80
BspANI	GGCC	3 cut(s)	227, 652, 943
BspCNI	CTCAG	8 cut(s)	47, 292, 322, 531, 627, 688, 892, 1027
BspFNI	CGCG	2 cut(s)	251, 806
BspLI	GGNNCC	3 cut(s)	166, 484, 951
BspPI	GGATC	4 cut(s)	413, 450, 477, 490
BspT107I	GGYRCC	1 cut(s)	164
BsrFI	RCCGGY	3 cut(s)	140, 161, 992
BssAI	RCCGGY	3 cut(s)	140, 161, 992
BssECI	CCNNGG	1 cut(s)	944
BssMI	GATC	6 cut(s)	268, 405, 455, 482, 745, 1038
Bst2UI	CCWGG	1 cut(s)	945
Bst4CI	ACNGT	2 cut(s)	742, 824
Bst6I	CTCTTC	1 cut(s)	95
BstBAI	YACGTR	1 cut(s)	882
BstC8I	GCNNGC	3 cut(s)	142, 185, 858
BstDEI	CTNAG	9 cut(s)	34, 254, 279, 330, 518, 635, 696, 900, 1035
BstF5I	GGATG	1 cut(s)	766
BstFNI	CGCG	2 cut(s)	251, 806
BstHHI	GCGC	3 cut(s)	253, 776, 806
BstKTI	GATC	6 cut(s)	271, 408, 458, 485, 748, 1041
BstMAI	GTCTC	2 cut(s)	337, 623
BstMBI	GATC	6 cut(s)	268, 405, 455, 482, 745, 1038
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 605, 962
BstNI	CCWGG	1 cut(s)	945
BstNSI	RCATGY	2 cut(s)	424, 625
BstSCI	CCNGG	2 cut(s)	679, 943
BstSLI	GKGCMC	1 cut(s)	220
BstUI	CGCG	2 cut(s)	251, 806
BstV1I	GCAGC	3 cut(s)	287, 518, 620
BstX2I	RGATCY	2 cut(s)	455, 482
BstYI	RGATCY	2 cut(s)	455, 482
BsuI	GTATCC	2 cut(s)	460, 677
BsuRI	GGCC	3 cut(s)	227, 652, 943
BtsCI	GGATG	1 cut(s)	766
BtsIMutI	CAGTG	3 cut(s)	287, 632, 829
Cac8I	GCNNGC	3 cut(s)	142, 185, 858
CfoI	GCGC	3 cut(s)	253, 776, 806
Cfr10I	RCCGGY	3 cut(s)	140, 161, 992
Cfr13I	GGNCC	3 cut(s)	226, 382, 650
Csp6I	GTAC	1 cut(s)	1012
CspAI	ACCGGT	1 cut(s)	161
CspCI	CAANNNNNGTGG	2 cut(s)	484, 519
CviAII	CATG	5 cut(s)	421, 564, 622, 861, 934
CviQI	GTAC	1 cut(s)	1012
DdeI	CTNAG	9 cut(s)	34, 254, 279, 330, 518, 635, 696, 900, 1035
DpnI	GATC	6 cut(s)	270, 407, 457, 484, 747, 1040
DpnII	GATC	6 cut(s)	268, 405, 455, 482, 745, 1038
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco147I	AGGCCT	1 cut(s)	943
Eco24I	GRGCYC	1 cut(s)	952
Eco32I	GATATC	2 cut(s)	442, 979
Eco47I	GGWCC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	109
Eco88I	CYCGRG	1 cut(s)	1016
EcoRII	CCWGG	1 cut(s)	943
EcoRV	GATATC	2 cut(s)	442, 979
EcoT22I	ATGCAT	1 cut(s)	565
EcoT38I	GRGCYC	1 cut(s)	952
FaeI	CATG	5 cut(s)	424, 567, 625, 864, 937
FaqI	GGGAC	1 cut(s)	1006
FatI	CATG	5 cut(s)	420, 563, 621, 860, 933
Fnu4HI	GCNGC	4 cut(s)	80, 276, 507, 609
FokI	GGATG	1 cut(s)	773
FriOI	GRGCYC	1 cut(s)	952
Fsp4HI	GCNGC	4 cut(s)	80, 276, 507, 609
FspBI	CTAG	3 cut(s)	230, 939, 969
GlaI	GCGC	3 cut(s)	252, 775, 805
GluI	GCNGC	4 cut(s)	80, 276, 507, 609
GsaI	CCCAGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	3 cut(s)	227, 652, 943
HapII	CCGG	5 cut(s)	141, 162, 174, 681, 993
HhaI	GCGC	3 cut(s)	253, 776, 806
Hin1II	CATG	5 cut(s)	424, 567, 625, 864, 937
Hin6I	GCGC	3 cut(s)	251, 774, 804
HinP1I	GCGC	3 cut(s)	251, 774, 804
HinfI	GANTC	4 cut(s)	537, 676, 692, 1019
HpaII	CCGG	5 cut(s)	141, 162, 174, 681, 993
HphI	GGTGA	5 cut(s)	40, 94, 151, 403, 427
Hpy166II	GTNNAC	2 cut(s)	820, 836
Hpy188I	TCNGA	4 cut(s)	374, 455, 521, 697
Hpy188III	TCNNGA	7 cut(s)	25, 112, 293, 673, 749, 1034, 1042
Hpy8I	GTNNAC	2 cut(s)	820, 836
HpyAV	CCTTC	4 cut(s)	61, 369, 722, 880
HpyCH4III	ACNGT	2 cut(s)	742, 824
HpyCH4IV	ACGT	1 cut(s)	881
HpyCH4V	TGCA	7 cut(s)	206, 339, 506, 563, 599, 796, 812
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 605, 962
HpyF3I	CTNAG	9 cut(s)	34, 254, 279, 330, 518, 635, 696, 900, 1035
HpySE526I	ACGT	1 cut(s)	881
Hsp92II	CATG	5 cut(s)	424, 567, 625, 864, 937
HspAI	GCGC	3 cut(s)	251, 774, 804
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
Kzo9I	GATC	6 cut(s)	268, 405, 455, 482, 745, 1038
LmnI	GCTCC	3 cut(s)	43, 514, 955
Lsp1109I	GCAGC	3 cut(s)	287, 518, 620
MaeI	CTAG	3 cut(s)	230, 939, 969
MaeII	ACGT	1 cut(s)	881
MaeIII	GTNAC	3 cut(s)	433, 673, 917
MalI	GATC	6 cut(s)	270, 407, 457, 484, 747, 1040
MboI	GATC	6 cut(s)	268, 405, 455, 482, 745, 1038
MboII	GAAGA	7 cut(s)	46, 82, 91, 115, 440, 543, 1012
MfeI	CAATTG	1 cut(s)	813
MflI	RGATCY	2 cut(s)	455, 482
MhlI	GDGCHC	4 cut(s)	119, 189, 220, 952
MluCI	AATT	5 cut(s)	448, 644, 777, 813, 923
MlyI	GAGTC	3 cut(s)	670, 701, 1028
MmeI	TCCRAC	2 cut(s)	360, 405
Mph1103I	ATGCAT	1 cut(s)	565
MroNI	GCCGGC	1 cut(s)	140
MroXI	GAANNNNTTC	1 cut(s)	890
MseI	TTAA	1 cut(s)	558
MslI	CAYNNNNRTG	1 cut(s)	995
MspI	CCGG	5 cut(s)	141, 162, 174, 681, 993
MspR9I	CCNGG	2 cut(s)	681, 945
MunI	CAATTG	1 cut(s)	813
Mva1269I	GAATGC	2 cut(s)	806, 814
MvaI	CCWGG	1 cut(s)	945
MvnI	CGCG	2 cut(s)	251, 806
MwoI	GCNNNNNNNGC	3 cut(s)	224, 605, 962
NaeI	GCCGGC	1 cut(s)	142
NciI	CCSGG	1 cut(s)	681
NdeII	GATC	6 cut(s)	268, 405, 455, 482, 745, 1038
NgoMIV	GCCGGC	1 cut(s)	140
NlaIII	CATG	5 cut(s)	424, 567, 625, 864, 937
NlaIV	GGNNCC	3 cut(s)	166, 484, 951
NmuCI	GTSAC	2 cut(s)	433, 673
NsiI	ATGCAT	1 cut(s)	565
NspI	RCATGY	2 cut(s)	424, 625
OliI	CACNNNNGTG	1 cut(s)	995
PceI	AGGCCT	1 cut(s)	943
PctI	GAATGC	2 cut(s)	806, 814
PdiI	GCCGGC	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	890
PfeI	GAWTC	1 cut(s)	537
PfoI	TCCNGGA	1 cut(s)	679
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	81, 277, 508, 610
PleI	GAGTC	3 cut(s)	670, 700, 1027
PpsI	GAGTC	3 cut(s)	670, 700, 1027
Ppu21I	YACGTR	1 cut(s)	882
Psp6I	CCWGG	1 cut(s)	943
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	943
PspN4I	GGNNCC	3 cut(s)	166, 484, 951
PspPI	GGNCC	3 cut(s)	226, 382, 650
PsuI	RGATCY	2 cut(s)	455, 482
RsaI	GTAC	1 cut(s)	1013
RsaNI	GTAC	1 cut(s)	1012
RseI	CAYNNNNRTG	1 cut(s)	995
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	4 cut(s)	80, 276, 507, 609
Sau3AI	GATC	6 cut(s)	268, 405, 455, 482, 745, 1038
Sau96I	GGNCC	3 cut(s)	226, 382, 650
SchI	GAGTC	3 cut(s)	670, 701, 1028
ScrFI	CCNGG	2 cut(s)	681, 945
SduI	GDGCHC	4 cut(s)	119, 189, 220, 952
SgrAI	CRCCGGYG	2 cut(s)	161, 992
SinI	GGWCC	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	995
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	5 cut(s)	448, 644, 777, 813, 923
SseBI	AGGCCT	1 cut(s)	943
SsiI	CCGC	2 cut(s)	77, 80
SspMI	CTAG	3 cut(s)	230, 939, 969
StuI	AGGCCT	1 cut(s)	943
StyD4I	CCNGG	2 cut(s)	679, 943
TaaI	ACNGT	2 cut(s)	742, 824
TaiI	ACGT	1 cut(s)	884
TaqI	TCGA	2 cut(s)	271, 909
TasI	AATT	5 cut(s)	448, 644, 777, 813, 923
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	537
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	3 cut(s)	287, 639, 829
TseFI	GTSAC	2 cut(s)	433, 673
TseI	GCWGC	3 cut(s)	275, 506, 608
Tsp45I	GTSAC	2 cut(s)	433, 673
TspDTI	ATGAA	4 cut(s)	369, 650, 716, 975
TspGWI	ACGGA	3 cut(s)	448, 475, 544
TspRI	CASTG	3 cut(s)	287, 639, 829
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	3 cut(s)	448, 644, 923
XceI	RCATGY	2 cut(s)	424, 625
XmnI	GAANNNNTTC	1 cut(s)	890
XspI	CTAG	3 cut(s)	230, 939, 969
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.