Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004661

Physical Location & Seq

Genomic Coordinates Forward (+)

21814690 .. 21822670

Gene Structure 7981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G019620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTATGTGATGCTTCCACTAGACACAGTGACCCATGGAGGGCATTTGAACAAGCCAAGAGCAATGAATGTGAGTTCGATGGCTTTGAAGAATGCAGGAGTAGAAGGAGTTATGGTTGATGCTTGGTGGGGATTGGTCGAGAAAGATGGATGGACCTTCCAAATAAGCAAGAATCCTGACCTTGTGTACACGGACAAATCTGGCAGAAGGAATCCTGAGCACATATCCTTGGGTTGTGATTCATTGCCTAGCTTCCATGACAGATTCAGAGATTACTTGGGAGACGTTATTGTGGAAATTCAAGTCGGTATGGGTCCTTGTGGTGAACTCAGATATCCTGCTTATCCAGAGAGCAATGGAACATGGAAAATATTGGTATATATGTTAATTTTTAAACAAGGTTTTGTGTCACAGTACATGAAAGCCCTGGAAGCATCAGCAGAGGCACAAGGAAAGAGAGATTGGGGAAGGACTGGACCCCATGATTCCGGCCAGTACAATCAGTTTCCTGAAGACACCGAATTTTTCAAAAGAGATGGAACCTGGAATACTGAGTATGGACAGTTCTTCCTCGAATGGTGCTCAGAGAAGCTATTAAGGCACGGAGATAGACTCCTGGCAGCTGAAAAAGTAGTGTTCCAAGGAACTGGTGCTAAACTATCTGGAAAGGTAGCTGGGATTTATGGTTACATACCAACAGCAAAAATGTTCAGCAAACATGGGGTTGTAATATTAAACTTCACCTGCATGGAAATGAAAGATGGAGAACAGCCCGACAATGCAAATTGCTTGCCTGAGGGGTTAGTCCGGCAAGTAAAGATCGATGGCAACCAAGACAGATCAGATTCCAGCAATGAATTGAGTGCTTTCACATATCTAAGATTGAATAAGAGATTGTTCGAAGGGGACAACTGGCGGAACATGGTTGAATTTGTGAAAGGCATGGCTGAAGGTGGCCGGAATGAAAGACTGACAGAGTGCAACTCCACTGGCATCGACCTTGTTGTTCATTTTATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

340

Amino Acids

38.41

Weight (kDa)

5.95

Isoelectric Point (pI)

29.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	2 - 50	2.3e-18	Glycosyl hydrolase family 14
Glyco_hydro_14	PF01373	54 - 228	1.5e-55	Glycosyl hydrolase family 14
Glyco_hydro_14	PF01373	229 - 275	2.7e-13	Glycosyl hydrolase family 14
Glyco_hydro_14	PF01373	279 - 311	9.8e-06	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17090
fragaria_vesca	FvH4_5g20800
malus_domestica	MD04G1056200.v1.1 MD06G1043900.v1.1 MD06G1044100.v1.1
prunus_persica	Prupe.5G051000_v2.0.a1
pyrus_communis	pycom04g04940 pycom06g03710 pycom06g03720
rosa_chinensis	RchiOBHm_Chr0c22g0500651 RchiOBHm_Chr7g0206601 RchiOBHm_Chr7g0207461 RchiOBHm_Chr7g0207721
rosa_laevigata	RLG00000003292
rosa_multiflora	Rmu_sc0007645.1_g000004 Rmu_sc0008509.1_g000004 Rmu_sc0008756.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251200 Rroxscaffold_3G00251330
rosa_rugosa	Rorug06G0115800 Rorug07G0099200
rosa_samantha	Rh7AG231100 Rh7AG231400 Rh7AG232400 Rh7BG227800 Rh7CG246000 Rh7DG238300 Rh7DG238600
rosa_wichuraiana	Rw0G021940 Rw7G019620 Rw7G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	752
Acc36I	ACCTGC	1 cut(s)	752
AciI	CCGC	1 cut(s)	916
AcoI	YGGCCR	2 cut(s)	490, 955
AcsI	RAATTY	3 cut(s)	297, 521, 929
AcuI	CTGAAG	2 cut(s)	531, 969
AfaI	GTAC	3 cut(s)	188, 416, 497
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	6 cut(s)	49, 88, 302, 529, 886, 929
AjnI	CCWGG	3 cut(s)	426, 542, 615
AjuI	GAANNNNNNNTTGG	2 cut(s)	445, 477
AluBI	AGCT	4 cut(s)	252, 592, 623, 674
AluI	AGCT	4 cut(s)	252, 592, 623, 674
Alw21I	GWGCWC	2 cut(s)	222, 584
Alw26I	GTCTC	1 cut(s)	276
AoxI	GGCC	2 cut(s)	490, 955
ApeKI	GCWGC	1 cut(s)	620
ApoI	RAATTY	3 cut(s)	297, 521, 929
AspS9I	GGNCC	3 cut(s)	153, 314, 476
AsuHPI	GGTGA	2 cut(s)	335, 733
AsuII	TTCGAA	1 cut(s)	900
AvaII	GGWCC	3 cut(s)	153, 314, 476
AxyI	CCTNAGG	1 cut(s)	795
BbsI	GAAGAC	1 cut(s)	519
Bbv12I	GWGCWC	2 cut(s)	222, 584
BbvI	GCAGC	1 cut(s)	632
BccI	CCATC	6 cut(s)	73, 140, 144, 530, 755, 818
BciT130I	CCWGG	3 cut(s)	428, 544, 617
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	2 cut(s)	20, 249
BfuAI	ACCTGC	1 cut(s)	752
BisI	GCNGC	1 cut(s)	621
BlsI	GCNGC	1 cut(s)	622
Bme1390I	CCNGG	3 cut(s)	428, 544, 617
Bme18I	GGWCC	3 cut(s)	153, 314, 476
BmgT120I	GGNCC	3 cut(s)	153, 314, 476
BmiI	GGNNCC	3 cut(s)	315, 478, 541
BmrFI	CCNGG	3 cut(s)	428, 544, 617
BmsI	GCATC	3 cut(s)	109, 443, 1002
BpiI	GAAGAC	1 cut(s)	519
BplI	GAGNNNNNCTC	4 cut(s)	597, 629, 968, 1000
Bpu10I	CCTNAGC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	900
Bsa29I	ATCGAT	1 cut(s)	822
BsaJI	CCNNGG	4 cut(s)	34, 228, 426, 640
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	5 cut(s)	478, 493, 652, 917, 994
Bse21I	CCTNAGG	1 cut(s)	795
Bse3DI	GCAATG	4 cut(s)	69, 242, 361, 859
BseBI	CCWGG	3 cut(s)	428, 544, 617
BseCI	ATCGAT	1 cut(s)	822
BseDI	CCNNGG	4 cut(s)	34, 228, 426, 640
BseGI	GGATG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMI	GCAATG	4 cut(s)	69, 242, 361, 859
BseMII	CTCAG	5 cut(s)	207, 343, 543, 597, 786
BseNI	ACTGG	5 cut(s)	478, 493, 652, 917, 994
BseXI	GCAGC	1 cut(s)	632
BseYI	CCCAGC	1 cut(s)	674
BshFI	GGCC	2 cut(s)	492, 957
BshVI	ATCGAT	1 cut(s)	822
BsiHKAI	GWGCWC	2 cut(s)	222, 584
BsiSI	CCGG	3 cut(s)	489, 808, 958
BslFI	GGGAC	1 cut(s)	920
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	276
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	920
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	492, 957
Bsp119I	TTCGAA	1 cut(s)	900
Bsp1286I	GDGCHC	2 cut(s)	222, 584
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	819, 839
Bsp19I	CCATGG	1 cut(s)	34
BspACI	CCGC	1 cut(s)	916
BspANI	GGCC	2 cut(s)	492, 957
BspCNI	CTCAG	5 cut(s)	208, 342, 544, 596, 787
BspDI	ATCGAT	1 cut(s)	822
BspLI	GGNNCC	3 cut(s)	315, 478, 541
BspMI	ACCTGC	1 cut(s)	752
BspT104I	TTCGAA	1 cut(s)	900
BsrDI	GCAATG	4 cut(s)	69, 242, 361, 859
BsrGI	TGTACA	1 cut(s)	186
BsrI	ACTGG	5 cut(s)	478, 493, 652, 917, 994
BssECI	CCNNGG	4 cut(s)	34, 228, 426, 640
BssMI	GATC	2 cut(s)	819, 839
BssT1I	CCWWGG	3 cut(s)	34, 228, 640
Bst2UI	CCWGG	3 cut(s)	428, 544, 617
Bst4CI	ACNGT	3 cut(s)	28, 414, 564
BstAUI	TGTACA	1 cut(s)	186
BstBI	TTCGAA	1 cut(s)	900
BstC8I	GCNNGC	1 cut(s)	791
BstDEI	CTNAG	6 cut(s)	216, 329, 552, 583, 795, 878
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	822, 842
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	2 cut(s)	819, 839
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 598
BstNI	CCWGG	3 cut(s)	428, 544, 617
BstSCI	CCNGG	3 cut(s)	426, 542, 615
BstV1I	GCAGC	1 cut(s)	632
BstV2I	GAAGAC	1 cut(s)	519
BstXI	CCANNNNNNTGG	1 cut(s)	647
Bsu15I	ATCGAT	1 cut(s)	822
Bsu36I	CCTNAGG	1 cut(s)	795
BsuRI	GGCC	2 cut(s)	492, 957
BsuTUI	ATCGAT	1 cut(s)	822
BtgI	CCRYGG	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	33, 987
BveI	ACCTGC	1 cut(s)	752
Cac8I	GCNNGC	1 cut(s)	791
Cfr13I	GGNCC	3 cut(s)	153, 314, 476
ClaI	ATCGAT	1 cut(s)	822
Csp6I	GTAC	3 cut(s)	187, 415, 496
CviAII	CATG	9 cut(s)	35, 257, 363, 418, 482, 719, 748, 922, 943
CviQI	GTAC	3 cut(s)	187, 415, 496
DdeI	CTNAG	6 cut(s)	216, 329, 552, 583, 795, 878
DpnI	GATC	2 cut(s)	821, 841
DpnII	GATC	2 cut(s)	819, 839
DraI	TTTAAA	1 cut(s)	394
EaeI	YGGCCR	2 cut(s)	490, 955
EciI	GGCGGA	1 cut(s)	931
Eco130I	CCWWGG	3 cut(s)	34, 228, 640
Eco32I	GATATC	1 cut(s)	335
Eco47I	GGWCC	3 cut(s)	153, 314, 476
Eco57I	CTGAAG	2 cut(s)	531, 969
Eco81I	CCTNAGG	1 cut(s)	795
EcoO109I	RGGNCCY	1 cut(s)	314
EcoRII	CCWGG	3 cut(s)	426, 542, 615
EcoRV	GATATC	1 cut(s)	335
EcoT14I	CCWWGG	3 cut(s)	34, 228, 640
ErhI	CCWWGG	3 cut(s)	34, 228, 640
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	9 cut(s)	38, 260, 366, 421, 485, 722, 751, 925, 946
FaqI	GGGAC	1 cut(s)	920
FatI	CATG	9 cut(s)	34, 256, 362, 417, 481, 718, 747, 921, 942
Fnu4HI	GCNGC	1 cut(s)	621
FokI	GGATG	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	621
FspBI	CTAG	2 cut(s)	20, 249
GluI	GCNGC	1 cut(s)	621
GsaI	CCCAGC	1 cut(s)	678
HaeIII	GGCC	2 cut(s)	492, 957
HapII	CCGG	3 cut(s)	489, 808, 958
Hin1II	CATG	9 cut(s)	38, 260, 366, 421, 485, 722, 751, 925, 946
HinfI	GANTC	7 cut(s)	172, 211, 239, 264, 485, 612, 845
HpaII	CCGG	3 cut(s)	489, 808, 958
HphI	GGTGA	2 cut(s)	335, 733
Hpy166II	GTNNAC	3 cut(s)	187, 189, 326
Hpy188I	TCNGA	4 cut(s)	269, 332, 586, 844
Hpy188III	TCNNGA	6 cut(s)	139, 176, 215, 347, 509, 663
Hpy8I	GTNNAC	3 cut(s)	187, 189, 326
HpyAV	CCTTC	6 cut(s)	98, 166, 201, 462, 896, 944
HpyCH4III	ACNGT	3 cut(s)	28, 414, 564
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	4 cut(s)	95, 747, 782, 981
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 598
HpyF3I	CTNAG	6 cut(s)	216, 329, 552, 583, 795, 878
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	9 cut(s)	38, 260, 366, 421, 485, 722, 751, 925, 946
Kzo9I	GATC	2 cut(s)	819, 839
Lsp1109I	GCAGC	1 cut(s)	632
LweI	GCATC	3 cut(s)	109, 443, 1002
MaeI	CTAG	2 cut(s)	20, 249
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	3 cut(s)	28, 408, 686
MalI	GATC	2 cut(s)	821, 841
MboI	GATC	2 cut(s)	819, 839
MboII	GAAGA	3 cut(s)	100, 524, 559
MhlI	GDGCHC	2 cut(s)	222, 584
MluCI	AATT	6 cut(s)	297, 387, 521, 784, 857, 929
MlyI	GAGTC	1 cut(s)	606
MnlI	CCTC	4 cut(s)	32, 436, 581, 790
MseI	TTAA	4 cut(s)	386, 393, 596, 734
MslI	CAYNNNNRTG	2 cut(s)	746, 752
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	3 cut(s)	489, 808, 958
MspR9I	CCNGG	3 cut(s)	428, 544, 617
Mva1269I	GAATGC	1 cut(s)	97
MvaI	CCWGG	3 cut(s)	428, 544, 617
MwoI	GCNNNNNNNGC	2 cut(s)	431, 598
NcoI	CCATGG	1 cut(s)	34
NdeII	GATC	2 cut(s)	819, 839
NlaIII	CATG	9 cut(s)	38, 260, 366, 421, 485, 722, 751, 925, 946
NlaIV	GGNNCC	3 cut(s)	315, 478, 541
NmuCI	GTSAC	2 cut(s)	28, 408
NspV	TTCGAA	1 cut(s)	900
PaqCI	CACCTGC	1 cut(s)	752
PctI	GAATGC	1 cut(s)	97
PfeI	GAWTC	6 cut(s)	172, 211, 239, 264, 485, 845
PkrI	GCNGC	1 cut(s)	622
PleI	GAGTC	1 cut(s)	606
PpsI	GAGTC	1 cut(s)	606
PpuMI	RGGWCCY	1 cut(s)	314
Psp5II	RGGWCCY	1 cut(s)	314
Psp6I	CCWGG	3 cut(s)	426, 542, 615
PspFI	CCCAGC	1 cut(s)	674
PspGI	CCWGG	3 cut(s)	426, 542, 615
PspN4I	GGNNCC	3 cut(s)	315, 478, 541
PspPI	GGNCC	3 cut(s)	153, 314, 476
PspPPI	RGGWCCY	1 cut(s)	314
PsrI	GAACNNNNNNTAC	4 cut(s)	532, 548, 564, 580
PvuII	CAGCTG	1 cut(s)	623
RsaI	GTAC	3 cut(s)	188, 416, 497
RsaNI	GTAC	3 cut(s)	187, 415, 496
RseI	CAYNNNNRTG	2 cut(s)	746, 752
SaqAI	TTAA	4 cut(s)	386, 393, 596, 734
SatI	GCNGC	1 cut(s)	621
Sau3AI	GATC	2 cut(s)	819, 839
Sau96I	GGNCC	3 cut(s)	153, 314, 476
SchI	GAGTC	1 cut(s)	606
ScrFI	CCNGG	3 cut(s)	428, 544, 617
SduI	GDGCHC	2 cut(s)	222, 584
SfaNI	GCATC	3 cut(s)	109, 443, 1002
SfuI	TTCGAA	1 cut(s)	900
SinI	GGWCC	3 cut(s)	153, 314, 476
SmiMI	CAYNNNNRTG	2 cut(s)	746, 752
Sse9I	AATT	6 cut(s)	297, 387, 521, 784, 857, 929
SsiI	CCGC	1 cut(s)	916
SspI	AATATT	2 cut(s)	372, 732
SspMI	CTAG	2 cut(s)	20, 249
StyD4I	CCNGG	3 cut(s)	426, 542, 615
StyI	CCWWGG	3 cut(s)	34, 228, 640
TaaI	ACNGT	3 cut(s)	28, 414, 564
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	6 cut(s)	77, 138, 573, 822, 900, 996
TasI	AATT	6 cut(s)	297, 387, 521, 784, 857, 929
TatI	WGTACW	3 cut(s)	186, 414, 495
TfiI	GAWTC	6 cut(s)	172, 211, 239, 264, 485, 845
Tru1I	TTAA	4 cut(s)	386, 393, 596, 734
Tru9I	TTAA	4 cut(s)	386, 393, 596, 734
TscAI	CASTG	2 cut(s)	33, 994
TseFI	GTSAC	2 cut(s)	28, 408
TseI	GCWGC	1 cut(s)	620
Tsp45I	GTSAC	2 cut(s)	28, 408
TspDTI	ATGAA	7 cut(s)	80, 231, 434, 770, 870, 978, 998
TspGWI	ACGGA	2 cut(s)	206, 618
TspRI	CASTG	2 cut(s)	33, 994
VpaK11BI	GGWCC	3 cut(s)	153, 314, 476
XapI	RAATTY	3 cut(s)	297, 521, 929
XspI	CTAG	2 cut(s)	20, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.