Rh7AG231400

Beta-amylase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
22192278 .. 22202578
10301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG231400.1

Sequence Viewer

Length: 1329 bp
ATGGTTGCAAAGAAGAAGTTGGTCTTAAGAGATGATGTGAACATGGTATCTAAAGAGGAACTTGTGCATGCCACTAATGGGAAGGCAAAACTAACTGGGGTATTGGAAGAGGAGTTAAGACATGTCTTTGCTGTTCCGAAGGCAAGAGTAAATGATGCAGAGCCATCATGCCGCATCCGGGCAAAGAGTTCCCTGCAAGAAGCACAGCTCTTCCAGGAAAGAATCAGGCTGAGCATCACCACTGATGATCTCCCGAGGGAGTTGCTTCATGCACTCCCAAATATTGCTCACAGCAGCAATAACAACGACTTCAAGAAGGTGCATGTGTATGTGATTCTTCCACTAGACACAGTGACGCATGGAGGGCATTTGAACAAGCCAAGAGCATTGAATGCGAGTTTGATGGCTTTGAAGAATGCAGGAGTAGAAGGAGTTATGGTGGATGCTTGGTGGGGATTGGTCGAGAAAGACGGACCTTCCAAGTACAACTGGGAAGGGTATGCAGAGCATGTGAACTTTGTCCAGAAGCATGGCTTGAAGATTCAAGTTGTCATGTCTTTCCATCAATGTGGAGGAAATGTTGGAGACTCATGCAGTTATGACATGTTTAAACTTAATGAGGCCAGGAATCCTGAGTACATATCCTTGGGGTGTGATTCATTGCCTGTTCTTGGAGGAATAACGCCCATCCAGGTTTACACCGACTACATGAAGACCTTCCATGACAGATTCAGAGATTACTCTTGGGAGACGTTATTGTGGTTTGAGACTGAATTTCAACTATTTCTCCAGGAAATTCAAGTCGGTATGGGTCCTTGTGGTGAACTCAGATATCTTGCGTATCCAGAGAGCAATGGAACATGGAAGTTTCCTGGAATTGGAGAATTTGAATGCTATGACAAGTCCTTGAAAGCTTCCCTGGAAGCATTAGGAGAGGCACAAGGAAAGAGAGATTGGGGAAGGACTGGACCCCATGATTCCGGCCAGCACAATCAGTTTCCTGAAGACACCGGATTTTTCAAAAGAGATGGAACCTGGAATACCGAGTATGGACAGTTCTTCCTCGAATGGTACTCAGAGAAGCTATTAAGGAATGGAAATAGACTCCTGGCAGCTGCAAAAGGAGTATTCCAAGGAACTGGGGCTAAACTATCTGGAAAGGTAGCTGGGATTCATTGGCACTACAGAACAAGATCCCATGCTGCTGAATTAACTGCCGGCTACTATAATACTAGACGTAGAGATGGTTACATACCAACAGCAAAAATGTTCAGCAAATATGGGGTTGTATTAAACTTCACCTGCATGGAAATGAAAGATGGAGAATAG

Protein Analysis

442

Amino Acids

50.09

Weight (kDa)

6.98

Isoelectric Point (pI)

30.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_14 PF01373 110 - 441 4.5e-136 Glycosyl hydrolase family 14
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1310
Acc36I ACCTGC 1 cut(s) 1310
AciI CCGC 1 cut(s) 172
AclWI GGATC 1 cut(s) 1188
AcoI YGGCCR 1 cut(s) 982
AcsI RAATTY 3 cut(s) 773, 795, 884
AcuI CTGAAG 1 cut(s) 1023
AfaI GTAC 3 cut(s) 485, 638, 1073
AfiI CCNNNNNNNGG 4 cut(s) 78, 178, 671, 878
AflII CTTAAG 1 cut(s) 25
AflIII ACRYGT 2 cut(s) 121, 603
AjnI CCWGG 8 cut(s) 213, 623, 690, 789, 871, 918, 1034, 1107
AjuI GAANNNNNNNTTGG 2 cut(s) 937, 969
AluBI AGCT 5 cut(s) 208, 914, 1084, 1115, 1166
AluI AGCT 5 cut(s) 208, 914, 1084, 1115, 1166
Alw26I GTCTC 3 cut(s) 579, 743, 761
AlwI GGATC 1 cut(s) 1188
Ama87I CYCGRG 1 cut(s) 253
AoxI GGCC 2 cut(s) 621, 982
ApeKI GCWGC 4 cut(s) 294, 1112, 1115, 1202
ApoI RAATTY 3 cut(s) 773, 795, 884
Asp700I GAANNNNTTC 1 cut(s) 716
AspS9I GGNCC 3 cut(s) 473, 812, 968
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 3 cut(s) 229, 833, 1291
AvaI CYCGRG 1 cut(s) 253
AvaII GGWCC 3 cut(s) 473, 812, 968
BbsI GAAGAC 2 cut(s) 719, 1011
BbvI GCAGC 4 cut(s) 306, 1102, 1124, 1189
BccI CCATC 7 cut(s) 172, 397, 570, 695, 1022, 1238, 1313
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciT130I CCWGG 8 cut(s) 215, 625, 692, 791, 873, 920, 1036, 1109
BciVI GTATCC 1 cut(s) 852
BcnI CCSGG 1 cut(s) 179
BcoDI GTCTC 3 cut(s) 579, 743, 761
BfaI CTAG 2 cut(s) 344, 1233
BfmI CTRYAG 1 cut(s) 1183
BfrI CTTAAG 1 cut(s) 25
BfuAI ACCTGC 1 cut(s) 1310
BfuI GTATCC 1 cut(s) 852
BisI GCNGC 5 cut(s) 172, 295, 1113, 1116, 1203
BlpI GCTNAGC 1 cut(s) 230
BlsI GCNGC 5 cut(s) 173, 296, 1114, 1117, 1204
Bme1390I CCNGG 9 cut(s) 179, 215, 625, 692, 791, 873, 920, 1036, 1109
Bme18I GGWCC 3 cut(s) 473, 812, 968
BmeT110I CYCGRG 1 cut(s) 253
BmgT120I GGNCC 3 cut(s) 473, 812, 968
BmiI GGNNCC 3 cut(s) 813, 970, 1033
BmrFI CCNGG 9 cut(s) 179, 215, 625, 692, 791, 873, 920, 1036, 1109
BmrI ACTGGG 3 cut(s) 105, 499, 1149
BmsI GCATC 4 cut(s) 145, 183, 243, 433
BmuI ACTGGG 3 cut(s) 105, 499, 1149
BpiI GAAGAC 2 cut(s) 719, 1011
BpmI CTGGAG 1 cut(s) 773
Bpu1102I GCTNAGC 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 179
BsaJI CCNNGG 4 cut(s) 254, 645, 918, 1132
BsaWI WCCGGW 1 cut(s) 1010
BsaXI ACNNNNNCTCC 6 cut(s) 423, 453, 564, 594, 771, 801
Bsc4I CCNNNNNNNGG 4 cut(s) 78, 178, 671, 878
Bse118I RCCGGY 1 cut(s) 1217
Bse1I ACTGG 4 cut(s) 100, 494, 970, 1144
Bse3DI GCAATG 2 cut(s) 659, 859
BseBI CCWGG 8 cut(s) 215, 625, 692, 791, 873, 920, 1036, 1109
BseDI CCNNGG 4 cut(s) 254, 645, 918, 1132
BseGI GGATG 3 cut(s) 174, 448, 687
BseLI CCNNNNNNNGG 4 cut(s) 78, 178, 671, 878
BseMI GCAATG 2 cut(s) 659, 859
BseMII CTCAG 4 cut(s) 221, 624, 841, 1089
BseNI ACTGG 4 cut(s) 100, 494, 970, 1144
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 4 cut(s) 306, 1102, 1124, 1189
BseYI CCCAGC 1 cut(s) 1166
BshFI GGCC 2 cut(s) 623, 984
BsiHKCI CYCGRG 1 cut(s) 253
BsiSI CCGG 4 cut(s) 178, 981, 1011, 1218
BslI CCNNNNNNNGG 4 cut(s) 78, 178, 671, 878
BsmAI GTCTC 3 cut(s) 579, 743, 761
BsmBI CGTCTC 1 cut(s) 743
BsmI GAATGC 3 cut(s) 397, 421, 896
BsnI GGCC 2 cut(s) 623, 984
BsoBI CYCGRG 1 cut(s) 253
Bsp143I GATC 2 cut(s) 247, 1193
Bsp1720I GCTNAGC 1 cut(s) 230
BspACI CCGC 1 cut(s) 172
BspANI GGCC 2 cut(s) 623, 984
BspCNI CTCAG 4 cut(s) 222, 625, 840, 1088
BspLI GGNNCC 3 cut(s) 813, 970, 1033
BspMI ACCTGC 1 cut(s) 1310
BspPI GGATC 1 cut(s) 1188
BspQI GCTCTTC 1 cut(s) 215
BspTI CTTAAG 1 cut(s) 25
BsrDI GCAATG 2 cut(s) 659, 859
BsrFI RCCGGY 1 cut(s) 1217
BsrI ACTGG 4 cut(s) 100, 494, 970, 1144
BssAI RCCGGY 1 cut(s) 1217
BssECI CCNNGG 4 cut(s) 254, 645, 918, 1132
BssMI GATC 2 cut(s) 247, 1193
BssT1I CCWWGG 2 cut(s) 645, 1132
Bst2UI CCWGG 8 cut(s) 215, 625, 692, 791, 873, 920, 1036, 1109
Bst4CI ACNGT 2 cut(s) 352, 1056
Bst6I CTCTTC 2 cut(s) 102, 215
BstAFI CTTAAG 1 cut(s) 25
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 3 cut(s) 69, 986, 1219
BstDEI CTNAG 4 cut(s) 230, 633, 827, 1075
BstF5I GGATG 3 cut(s) 174, 448, 687
BstKTI GATC 2 cut(s) 250, 1196
BstMAI GTCTC 3 cut(s) 579, 743, 761
BstMBI GATC 2 cut(s) 247, 1193
BstMWI GCNNNNNNNGC 2 cut(s) 364, 392
BstNI CCWGG 8 cut(s) 215, 625, 692, 791, 873, 920, 1036, 1109
BstNSI RCATGY 5 cut(s) 71, 125, 326, 512, 607
BstSCI CCNGG 9 cut(s) 177, 213, 623, 690, 789, 871, 918, 1034, 1107
BstSFI CTRYAG 1 cut(s) 1183
BstV1I GCAGC 4 cut(s) 306, 1102, 1124, 1189
BstV2I GAAGAC 2 cut(s) 719, 1011
BstX2I RGATCY 1 cut(s) 1193
BstXI CCANNNNNNTGG 3 cut(s) 530, 569, 1139
BstYI RGATCY 1 cut(s) 1193
BsuI GTATCC 1 cut(s) 852
BsuRI GGCC 2 cut(s) 623, 984
BtsCI GGATG 3 cut(s) 174, 448, 687
BtsIMutI CAGTG 2 cut(s) 240, 357
BveI ACCTGC 1 cut(s) 1310
Cac8I GCNNGC 3 cut(s) 69, 986, 1219
Cfr10I RCCGGY 1 cut(s) 1217
Cfr13I GGNCC 3 cut(s) 473, 812, 968
CseI GACGC 1 cut(s) 364
Csp6I GTAC 3 cut(s) 484, 637, 1072
CviQI GTAC 3 cut(s) 484, 637, 1072
DdeI CTNAG 4 cut(s) 230, 633, 827, 1075
DpnI GATC 2 cut(s) 249, 1195
DpnII GATC 2 cut(s) 247, 1193
DraI TTTAAA 1 cut(s) 610
EaeI YGGCCR 1 cut(s) 982
Eam1104I CTCTTC 2 cut(s) 102, 215
EarI CTCTTC 2 cut(s) 102, 215
Eco130I CCWWGG 2 cut(s) 645, 1132
Eco32I GATATC 1 cut(s) 833
Eco47I GGWCC 3 cut(s) 473, 812, 968
Eco57I CTGAAG 1 cut(s) 1023
Eco88I CYCGRG 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 812
EcoRII CCWGG 8 cut(s) 213, 623, 690, 789, 871, 918, 1034, 1107
EcoRV GATATC 1 cut(s) 833
EcoT14I CCWWGG 2 cut(s) 645, 1132
ErhI CCWWGG 2 cut(s) 645, 1132
Esp3I CGTCTC 1 cut(s) 743
FalI AAGNNNNNCTT 6 cut(s) 8, 40, 45, 77, 518, 550
Fnu4HI GCNGC 5 cut(s) 172, 295, 1113, 1116, 1203
FokI GGATG 3 cut(s) 161, 455, 674
Fsp4HI GCNGC 5 cut(s) 172, 295, 1113, 1116, 1203
FspBI CTAG 2 cut(s) 344, 1233
GluI GCNGC 5 cut(s) 172, 295, 1113, 1116, 1203
GsaI CCCAGC 1 cut(s) 1170
GsuI CTGGAG 1 cut(s) 773
HaeIII GGCC 2 cut(s) 623, 984
HapII CCGG 4 cut(s) 178, 981, 1011, 1218
HgaI GACGC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 912
HpaII CCGG 4 cut(s) 178, 981, 1011, 1218
HphI GGTGA 3 cut(s) 229, 833, 1291
Hpy166II GTNNAC 4 cut(s) 40, 514, 697, 824
Hpy188I TCNGA 4 cut(s) 138, 734, 830, 1078
Hpy188III TCNNGA 8 cut(s) 253, 313, 463, 523, 632, 845, 1001, 1155
Hpy8I GTNNAC 4 cut(s) 40, 514, 697, 824
HpyAV CCTTC 8 cut(s) 76, 133, 310, 422, 486, 488, 727, 954
HpyCH4III ACNGT 2 cut(s) 352, 1056
HpyCH4IV ACGT 2 cut(s) 752, 1237
HpyF10VI GCNNNNNNNGC 2 cut(s) 364, 392
HpyF3I CTNAG 4 cut(s) 230, 633, 827, 1075
HpySE526I ACGT 2 cut(s) 752, 1237
KroI GCCGGC 1 cut(s) 1217
KroNI GCCGGC 1 cut(s) 1219
Kzo9I GATC 2 cut(s) 247, 1193
LguI GCTCTTC 1 cut(s) 215
Lsp1109I GCAGC 4 cut(s) 306, 1102, 1124, 1189
LweI GCATC 4 cut(s) 145, 183, 243, 433
MaeI CTAG 2 cut(s) 344, 1233
MaeII ACGT 2 cut(s) 752, 1237
MaeIII GTNAC 2 cut(s) 352, 1247
MalI GATC 2 cut(s) 249, 1195
MboI GATC 2 cut(s) 247, 1193
MboII GAAGA 9 cut(s) 25, 119, 202, 329, 424, 550, 724, 1016, 1051
MflI RGATCY 1 cut(s) 1193
MluCI AATT 5 cut(s) 773, 795, 876, 884, 1208
MlyI GAGTC 2 cut(s) 581, 1098
MmeI TCCRAC 1 cut(s) 562
MnlI CCTC 9 cut(s) 49, 103, 249, 356, 566, 613, 668, 928, 1073
MroNI GCCGGC 1 cut(s) 1217
MroXI GAANNNNTTC 1 cut(s) 716
MseI TTAA 7 cut(s) 26, 116, 609, 615, 1088, 1211, 1292
MslI CAYNNNNRTG 4 cut(s) 327, 567, 1304, 1310
MspA1I CMGCKG 1 cut(s) 1115
MspCI CTTAAG 1 cut(s) 25
MspI CCGG 4 cut(s) 178, 981, 1011, 1218
MspR9I CCNGG 9 cut(s) 179, 215, 625, 692, 791, 873, 920, 1036, 1109
MssI GTTTAAAC 1 cut(s) 610
Mva1269I GAATGC 3 cut(s) 397, 421, 896
MvaI CCWGG 8 cut(s) 215, 625, 692, 791, 873, 920, 1036, 1109
MwoI GCNNNNNNNGC 2 cut(s) 364, 392
NaeI GCCGGC 1 cut(s) 1219
NciI CCSGG 1 cut(s) 179
NdeII GATC 2 cut(s) 247, 1193
NgoMIV GCCGGC 1 cut(s) 1217
NlaIV GGNNCC 3 cut(s) 813, 970, 1033
NmuCI GTSAC 1 cut(s) 352
NspI RCATGY 5 cut(s) 71, 125, 326, 512, 607
PaeI GCATGC 1 cut(s) 71
PaqCI CACCTGC 1 cut(s) 1310
PciI ACATGT 2 cut(s) 121, 603
PciSI GCTCTTC 1 cut(s) 215
PctI GAATGC 3 cut(s) 397, 421, 896
PdiI GCCGGC 1 cut(s) 1219
PdmI GAANNNNTTC 1 cut(s) 716
PfeI GAWTC 8 cut(s) 222, 334, 541, 628, 656, 729, 977, 1171
PfoI TCCNGGA 3 cut(s) 213, 789, 871
PkrI GCNGC 5 cut(s) 173, 296, 1114, 1117, 1204
PleI GAGTC 2 cut(s) 581, 1098
PmeI GTTTAAAC 1 cut(s) 610
PpsI GAGTC 2 cut(s) 581, 1098
PpuMI RGGWCCY 1 cut(s) 812
PscI ACATGT 2 cut(s) 121, 603
Psp5II RGGWCCY 1 cut(s) 812
Psp6I CCWGG 8 cut(s) 213, 623, 690, 789, 871, 918, 1034, 1107
PspFI CCCAGC 1 cut(s) 1166
PspGI CCWGG 8 cut(s) 213, 623, 690, 789, 871, 918, 1034, 1107
PspN4I GGNNCC 3 cut(s) 813, 970, 1033
PspPI GGNCC 3 cut(s) 473, 812, 968
PspPPI RGGWCCY 1 cut(s) 812
PsrI GAACNNNNNNTAC 4 cut(s) 1024, 1040, 1056, 1072
PsuI RGATCY 1 cut(s) 1193
PvuII CAGCTG 1 cut(s) 1115
RsaI GTAC 3 cut(s) 485, 638, 1073
RsaNI GTAC 3 cut(s) 484, 637, 1072
RseI CAYNNNNRTG 4 cut(s) 327, 567, 1304, 1310
SapI GCTCTTC 1 cut(s) 215
SaqAI TTAA 7 cut(s) 26, 116, 609, 615, 1088, 1211, 1292
SatI GCNGC 5 cut(s) 172, 295, 1113, 1116, 1203
Sau3AI GATC 2 cut(s) 247, 1193
Sau96I GGNCC 3 cut(s) 473, 812, 968
SchI GAGTC 2 cut(s) 581, 1098
ScrFI CCNGG 9 cut(s) 179, 215, 625, 692, 791, 873, 920, 1036, 1109
SfaNI GCATC 4 cut(s) 145, 183, 243, 433
SfcI CTRYAG 1 cut(s) 1183
SinI GGWCC 3 cut(s) 473, 812, 968
SmiMI CAYNNNNRTG 4 cut(s) 327, 567, 1304, 1310
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
SphI GCATGC 1 cut(s) 71
Sse9I AATT 5 cut(s) 773, 795, 876, 884, 1208
SsiI CCGC 1 cut(s) 172
SspI AATATT 1 cut(s) 283
SspMI CTAG 2 cut(s) 344, 1233
StyD4I CCNGG 9 cut(s) 177, 213, 623, 690, 789, 871, 918, 1034, 1107
StyI CCWWGG 2 cut(s) 645, 1132
TaaI ACNGT 2 cut(s) 352, 1056
TaiI ACGT 2 cut(s) 755, 1240
TaqI TCGA 2 cut(s) 462, 1065
TasI AATT 5 cut(s) 773, 795, 876, 884, 1208
TatI WGTACW 2 cut(s) 483, 636
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 8 cut(s) 222, 334, 541, 628, 656, 729, 977, 1171
Tru1I TTAA 7 cut(s) 26, 116, 609, 615, 1088, 1211, 1292
Tru9I TTAA 7 cut(s) 26, 116, 609, 615, 1088, 1211, 1292
TscAI CASTG 2 cut(s) 247, 357
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 4 cut(s) 294, 1112, 1115, 1202
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 5 cut(s) 257, 648, 725, 1163, 1328
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 2 cut(s) 247, 357
Vha464I CTTAAG 1 cut(s) 25
VpaK11BI GGWCC 3 cut(s) 473, 812, 968
XapI RAATTY 3 cut(s) 773, 795, 884
XceI RCATGY 5 cut(s) 71, 125, 326, 512, 607
XmnI GAANNNNTTC 1 cut(s) 716
XspI CTAG 2 cut(s) 344, 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.