Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01017

Orthogroup ID

OG0004661

Physical Location & Seq

Genomic Coordinates Reverse (-)

4682 .. 5610

Gene Structure 929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G021940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAATGCGAGTTTGATGGCTTTGAAGAATGCAGGAGTAGAAGGAGTTATGGTGGATGCTTGGTGGGGATTGCATGTGAACTTTGTCCAGAAGCATGGCTTGAAGATTCAAGTTGTCATGTCTTTCCATCAATGTGGAGGAAATGTTGGAGACTCATGCAGTTATGACATACAAATCTGGCAGGAGGCCAGGAATCCTGAGTACATATCCTTGGGGTGTGATTCATTGCCTGTTCTTGGAGGAATAACGCCCATCCAGGTTTACACCGACTACATGAAGACCTTCCATGACAGATTCAGAGATTACTCTTGGGAGACGTTATTGTGGTTTGAGACTCAATTTCAACTATTTCTCCAGGAAATTCAAGTCAGTATGGGTCCTTGTGGTGAACTCAGATATCCTGCTTATCCTGAGAGCAATAGAACATGGAAGTTTCCTGGAATTGGAGAATTTGAATGCTATGACAAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

156

Amino Acids

17.99

Weight (kDa)

4.95

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	1 - 156	2.6e-48	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17090
fragaria_vesca	FvH4_5g20800
malus_domestica	MD04G1056200.v1.1 MD06G1043900.v1.1 MD06G1044100.v1.1
prunus_persica	Prupe.5G051000_v2.0.a1
pyrus_communis	pycom04g04940 pycom06g03710 pycom06g03720
rosa_chinensis	RchiOBHm_Chr0c22g0500651 RchiOBHm_Chr7g0206601 RchiOBHm_Chr7g0207461 RchiOBHm_Chr7g0207721
rosa_laevigata	RLG00000003292
rosa_multiflora	Rmu_sc0007645.1_g000004 Rmu_sc0008509.1_g000004 Rmu_sc0008756.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251200 Rroxscaffold_3G00251330
rosa_rugosa	Rorug06G0115800 Rorug07G0099200
rosa_samantha	Rh7AG231100 Rh7AG231400 Rh7AG232400 Rh7BG227800 Rh7CG246000 Rh7DG238300 Rh7DG238600
rosa_wichuraiana	Rw0G021940 Rw7G019620 Rw7G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	360, 449
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	236, 443
AgsI	TTSAA	6 cut(s)	25, 103, 110, 344, 365, 455
AjnI	CCWGG	4 cut(s)	188, 255, 354, 436
Alw26I	GTCTC	3 cut(s)	144, 308, 326
AoxI	GGCC	1 cut(s)	186
ApoI	RAATTY	2 cut(s)	360, 449
Asp700I	GAANNNNTTC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	284
BccI	CCATC	3 cut(s)	10, 135, 260
BciT130I	CCWGG	4 cut(s)	190, 257, 356, 438
BcoDI	GTCTC	3 cut(s)	144, 308, 326
Bme1390I	CCNGG	4 cut(s)	190, 257, 356, 438
Bme18I	GGWCC	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	4 cut(s)	190, 257, 356, 438
BmsI	GCATC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	210
BsaXI	ACNNNNNCTCC	6 cut(s)	36, 66, 129, 159, 336, 366
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 443
Bse3DI	GCAATG	1 cut(s)	224
BseBI	CCWGG	4 cut(s)	190, 257, 356, 438
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	61, 252
BseLI	CCNNNNNNNGG	2 cut(s)	236, 443
BseMI	GCAATG	1 cut(s)	224
BseMII	CTCAG	3 cut(s)	189, 402, 406
BshFI	GGCC	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	236, 443
BsmAI	GTCTC	3 cut(s)	144, 308, 326
BsmBI	CGTCTC	1 cut(s)	308
BsmI	GAATGC	3 cut(s)	10, 34, 461
BsnI	GGCC	1 cut(s)	188
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	3 cut(s)	190, 403, 405
BspLI	GGNNCC	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	4 cut(s)	190, 257, 356, 438
BstDEI	CTNAG	3 cut(s)	198, 392, 411
BstF5I	GGATG	2 cut(s)	61, 252
BstMAI	GTCTC	3 cut(s)	144, 308, 326
BstNI	CCWGG	4 cut(s)	190, 257, 356, 438
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	4 cut(s)	188, 255, 354, 436
BstV2I	GAAGAC	1 cut(s)	284
BstXI	CCANNNNNNTGG	2 cut(s)	95, 134
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	61, 252
Cfr13I	GGNCC	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	7 cut(s)	74, 95, 118, 156, 274, 287, 426
CviJI	RGCY	3 cut(s)	20, 99, 188
CviKI_1	RGCY	3 cut(s)	20, 99, 188
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	3 cut(s)	198, 392, 411
Eco130I	CCWWGG	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	398
Eco47I	GGWCC	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	377
EcoRII	CCWGG	4 cut(s)	188, 255, 354, 436
EcoRV	GATATC	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	7 cut(s)	77, 98, 121, 159, 277, 290, 429
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FatI	CATG	7 cut(s)	73, 94, 117, 155, 273, 286, 425
FokI	GGATG	2 cut(s)	68, 239
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	1 cut(s)	188
Hin1II	CATG	7 cut(s)	77, 98, 121, 159, 277, 290, 429
HinfI	GANTC	6 cut(s)	106, 152, 193, 221, 294, 334
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	3 cut(s)	79, 262, 389
Hpy188I	TCNGA	2 cut(s)	299, 395
Hpy188III	TCNNGA	3 cut(s)	88, 197, 410
Hpy8I	GTNNAC	3 cut(s)	79, 262, 389
HpyAV	CCTTC	2 cut(s)	35, 292
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	3 cut(s)	32, 73, 159
HpyF3I	CTNAG	3 cut(s)	198, 392, 411
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	7 cut(s)	77, 98, 121, 159, 277, 290, 429
LweI	GCATC	1 cut(s)	46
MaeII	ACGT	1 cut(s)	317
MboII	GAAGA	3 cut(s)	37, 115, 289
MluCI	AATT	4 cut(s)	338, 360, 441, 449
MlyI	GAGTC	2 cut(s)	146, 328
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	3 cut(s)	131, 178, 233
MroXI	GAANNNNTTC	1 cut(s)	281
MslI	CAYNNNNRTG	1 cut(s)	132
MspR9I	CCNGG	4 cut(s)	190, 257, 356, 438
Mva1269I	GAATGC	3 cut(s)	10, 34, 461
MvaI	CCWGG	4 cut(s)	190, 257, 356, 438
NlaIII	CATG	7 cut(s)	77, 98, 121, 159, 277, 290, 429
NlaIV	GGNNCC	1 cut(s)	378
NspI	RCATGY	1 cut(s)	77
PctI	GAATGC	3 cut(s)	10, 34, 461
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	4 cut(s)	106, 193, 221, 294
PfoI	TCCNGGA	2 cut(s)	354, 436
PleI	GAGTC	2 cut(s)	146, 328
PpsI	GAGTC	2 cut(s)	146, 328
PpuMI	RGGWCCY	1 cut(s)	377
Psp5II	RGGWCCY	1 cut(s)	377
Psp6I	CCWGG	4 cut(s)	188, 255, 354, 436
PspGI	CCWGG	4 cut(s)	188, 255, 354, 436
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	377
PspPPI	RGGWCCY	1 cut(s)	377
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	132
Sau96I	GGNCC	1 cut(s)	377
SchI	GAGTC	2 cut(s)	146, 328
ScrFI	CCNGG	4 cut(s)	190, 257, 356, 438
SetI	ASST	3 cut(s)	261, 284, 320
SfaNI	GCATC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	4 cut(s)	338, 360, 441, 449
StyD4I	CCNGG	4 cut(s)	188, 255, 354, 436
StyI	CCWWGG	1 cut(s)	210
TaiI	ACGT	1 cut(s)	320
TasI	AATT	4 cut(s)	338, 360, 441, 449
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	4 cut(s)	106, 193, 221, 294
TspDTI	ATGAA	3 cut(s)	17, 213, 290
VpaK11BI	GGWCC	1 cut(s)	377
XapI	RAATTY	2 cut(s)	360, 449
XceI	RCATGY	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.