Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004661

Physical Location & Seq

Genomic Coordinates Forward (+)

4690874 .. 4692490

Gene Structure 1617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03720.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGACGAGGTGCAACCACCACGCAACCCCTTCATCCATTCTCATCATTTTTTCTCTCTTCCCTTCCCTTCCATTCAAAACCCAAAACACAATTCAGAAAATACAATGACGTTAACTCTCCGTTCTTCAACTTCGTTCGTCAATCTTAAAGACCATAAGGGCCTTAAAACCTCCGGCGACTCCCCCGGCACGATATGCTTTGCGCAAATCAAGCCATCATGCTGTGTCCGGGCAAAGAGTTCAATGCAAGAAACACGGCTCTTGCACGAGAACTTAATGACCATCTCTGATGGAAGGAGAGAGTTGCTTCATGCACTCCCAGGTATTGCTCACACCAGCTCCGACAACAAGGTGCCTGTGTACGTGATGCTTCCGCTTGATACGGTGAGTCACGGAGGGCATTTGAATAAGCCGAGAGCAATGAATGCGAGTTTGATGGCCCTGAAGCAAGCAGGGGTTGAAGGAGTTATGGTGGATGTGTGGTGGGGATTGGTGGAGGAGGACGGACCTTCCAAGTACAACTGGGAAGGGTATGCCGAGCTTGTGCAGATGGTGCAAAAGCACGGCATGAAGATCGATGTCGTCATGTCTTTTCATCAGTGCGGAGGAAATGTTGGAGACTCATGCAGCATTCCTTTACCTCCATGGGTGCTTGAAGAAGTCAGCAAGAACCCTGACCTTGTTTACACAGACAAATCAGGCAGGAGGAATCCTGAGTACATATCCTTGGGATGTGATTCATTGCCTGTTCTCGGAGGAAGAACTCCCATTCAGGTCTACACCGATTACATGAGGAGCTTCCACGACAGATTCATTGACTGCTTGGGCGACGTTATTGTGGAAATTCAAGTAGGCATGGGTCCTTGTGGGGAGCTCAGATATCCAGCTTATCCAGAAAGCAACGGAACTTGGAGGTTTCCTGGAATCGGGGAATTCCAATGTTATGACAAGTACATGAGAGCTTCCTTGGAAGCATCAGCAGAGGCACTGGGGAAGAGAGATTGGGGAAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

339

Amino Acids

37.69

Weight (kDa)

6.22

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17090
fragaria_vesca	FvH4_5g20800
malus_domestica	MD04G1056200.v1.1 MD06G1043900.v1.1 MD06G1044100.v1.1
prunus_persica	Prupe.5G051000_v2.0.a1
pyrus_communis	pycom04g04940 pycom06g03710 pycom06g03720
rosa_chinensis	RchiOBHm_Chr0c22g0500651 RchiOBHm_Chr7g0206601 RchiOBHm_Chr7g0207461 RchiOBHm_Chr7g0207721
rosa_laevigata	RLG00000003292
rosa_multiflora	Rmu_sc0007645.1_g000004 Rmu_sc0008509.1_g000004 Rmu_sc0008756.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251200 Rroxscaffold_3G00251330
rosa_rugosa	Rorug06G0115800 Rorug07G0099200
rosa_samantha	Rh7AG231100 Rh7AG231400 Rh7AG232400 Rh7BG227800 Rh7CG246000 Rh7DG238300 Rh7DG238600
rosa_wichuraiana	Rw0G021940 Rw7G019620 Rw7G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	204
AccB1I	GGYRCC	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	777
AciI	CCGC	2 cut(s)	374, 603
AcsI	RAATTY	2 cut(s)	843, 932
AcuI	CTGAAG	1 cut(s)	464
AfaI	GTAC	4 cut(s)	362, 518, 719, 953
AfiI	CCNNNNNNNGG	2 cut(s)	752, 926
AgsI	TTSAA	7 cut(s)	77, 129, 243, 406, 461, 656, 848
AjnI	CCWGG	2 cut(s)	319, 919
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
AluBI	AGCT	6 cut(s)	339, 541, 798, 874, 887, 962
AluI	AGCT	6 cut(s)	339, 541, 798, 874, 887, 962
Alw21I	GWGCWC	1 cut(s)	876
Alw26I	GTCTC	1 cut(s)	612
AoxI	GGCC	2 cut(s)	160, 438
ApeKI	GCWGC	1 cut(s)	627
ApoI	RAATTY	2 cut(s)	843, 932
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	4 cut(s)	160, 439, 506, 860
AsuC2I	CCSGG	2 cut(s)	186, 230
AsuHPI	GGTGA	1 cut(s)	397
AvaII	GGWCC	2 cut(s)	506, 860
BanI	GGYRCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	876
BauI	CACGAG	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	876
BbvI	GCAGC	1 cut(s)	639
BccI	CCATC	5 cut(s)	223, 284, 290, 430, 544
BceAI	ACGGC	2 cut(s)	272, 580
BcgI	CGANNNNNNTGC	2 cut(s)	556, 590
BciT130I	CCWGG	2 cut(s)	321, 921
BcnI	CCSGG	2 cut(s)	186, 230
BcoDI	GTCTC	1 cut(s)	612
BisI	GCNGC	1 cut(s)	628
BlsI	GCNGC	1 cut(s)	629
Bme1390I	CCNGG	4 cut(s)	186, 230, 321, 921
Bme18I	GGWCC	2 cut(s)	506, 860
BmgT120I	GGNCC	4 cut(s)	160, 439, 506, 860
BmiI	GGNNCC	2 cut(s)	354, 861
BmrFI	CCNGG	4 cut(s)	186, 230, 321, 921
BmrI	ACTGGG	2 cut(s)	532, 998
BmsI	GCATC	2 cut(s)	357, 983
BmuI	ACTGGG	2 cut(s)	532, 998
BpuMI	CCSGG	2 cut(s)	186, 230
Bsa29I	ATCGAT	1 cut(s)	576
BsaAI	YACGTR	1 cut(s)	364
BsaJI	CCNNGG	5 cut(s)	184, 319, 644, 726, 966
BsaXI	ACNNNNNCTCC	6 cut(s)	323, 353, 456, 486, 597, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	752, 926
Bse1I	ACTGG	2 cut(s)	527, 993
Bse3DI	GCAATG	2 cut(s)	426, 740
BseBI	CCWGG	2 cut(s)	321, 921
BseCI	ATCGAT	1 cut(s)	576
BseDI	CCNNGG	5 cut(s)	184, 319, 644, 726, 966
BseGI	GGATG	3 cut(s)	33, 481, 737
BseLI	CCNNNNNNNGG	2 cut(s)	752, 926
BseMI	GCAATG	2 cut(s)	426, 740
BseMII	CTCAG	2 cut(s)	705, 889
BseNI	ACTGG	2 cut(s)	527, 993
BseRI	GAGGAG	2 cut(s)	512, 808
BseXI	GCAGC	1 cut(s)	639
BsgI	GTGCAG	1 cut(s)	566
BshFI	GGCC	2 cut(s)	162, 440
BshNI	GGYRCC	1 cut(s)	352
BshVI	ATCGAT	1 cut(s)	576
BsiHKAI	GWGCWC	1 cut(s)	876
BsiSI	CCGG	3 cut(s)	174, 186, 229
BslI	CCNNNNNNNGG	2 cut(s)	752, 926
BsmAI	GTCTC	1 cut(s)	612
BsmI	GAATGC	2 cut(s)	430, 630
BsnI	GGCC	2 cut(s)	162, 440
Bsp1286I	GDGCHC	1 cut(s)	876
Bsp143I	GATC	1 cut(s)	573
Bsp19I	CCATGG	1 cut(s)	644
BspACI	CCGC	2 cut(s)	374, 603
BspANI	GGCC	2 cut(s)	162, 440
BspCNI	CTCAG	2 cut(s)	706, 888
BspDI	ATCGAT	1 cut(s)	576
BspLI	GGNNCC	2 cut(s)	354, 861
BspT107I	GGYRCC	1 cut(s)	352
BsrDI	GCAATG	2 cut(s)	426, 740
BsrI	ACTGG	2 cut(s)	527, 993
BssECI	CCNNGG	5 cut(s)	184, 319, 644, 726, 966
BssMI	GATC	1 cut(s)	573
BssSI	CACGAG	1 cut(s)	266
BssT1I	CCWWGG	3 cut(s)	644, 726, 966
Bst2BI	CACGAG	1 cut(s)	266
Bst2UI	CCWGG	2 cut(s)	321, 921
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	2 cut(s)	63, 989
BstAPI	GCANNNNNTGC	3 cut(s)	195, 425, 553
BstBAI	YACGTR	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	2 cut(s)	714, 875
BstDSI	CCRYGG	1 cut(s)	644
BstF5I	GGATG	3 cut(s)	33, 481, 737
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	1 cut(s)	576
BstMAI	GTCTC	1 cut(s)	612
BstMBI	GATC	1 cut(s)	573
BstMWI	GCNNNNNNNGC	4 cut(s)	195, 211, 425, 553
BstNI	CCWGG	2 cut(s)	321, 921
BstSCI	CCNGG	4 cut(s)	184, 228, 319, 919
BstV1I	GCAGC	1 cut(s)	639
Bsu15I	ATCGAT	1 cut(s)	576
BsuRI	GGCC	2 cut(s)	162, 440
BsuTUI	ATCGAT	1 cut(s)	576
BtgI	CCRYGG	1 cut(s)	644
BtsCI	GGATG	3 cut(s)	33, 481, 737
BtsIMutI	CAGTG	2 cut(s)	605, 986
Cac8I	GCNNGC	1 cut(s)	450
CfoI	GCGC	1 cut(s)	205
Cfr13I	GGNCC	4 cut(s)	160, 439, 506, 860
ClaI	ATCGAT	1 cut(s)	576
Csp6I	GTAC	4 cut(s)	361, 517, 718, 952
CviAII	CATG	9 cut(s)	219, 311, 568, 586, 624, 645, 790, 856, 955
CviQI	GTAC	4 cut(s)	361, 517, 718, 952
DdeI	CTNAG	2 cut(s)	714, 875
DpnI	GATC	1 cut(s)	575
DpnII	GATC	1 cut(s)	573
Eam1104I	CTCTTC	2 cut(s)	63, 989
EarI	CTCTTC	2 cut(s)	63, 989
Ecl136II	GAGCTC	1 cut(s)	874
Eco130I	CCWWGG	3 cut(s)	644, 726, 966
Eco24I	GRGCYC	1 cut(s)	876
Eco32I	GATATC	1 cut(s)	881
Eco47I	GGWCC	2 cut(s)	506, 860
Eco53kI	GAGCTC	1 cut(s)	874
Eco57I	CTGAAG	1 cut(s)	464
EcoICRI	GAGCTC	1 cut(s)	874
EcoO109I	RGGNCCY	2 cut(s)	160, 860
EcoRI	GAATTC	1 cut(s)	932
EcoRII	CCWGG	2 cut(s)	319, 919
EcoRV	GATATC	1 cut(s)	881
EcoT14I	CCWWGG	3 cut(s)	644, 726, 966
EcoT38I	GRGCYC	1 cut(s)	876
ErhI	CCWWGG	3 cut(s)	644, 726, 966
FaeI	CATG	9 cut(s)	222, 314, 571, 589, 627, 648, 793, 859, 958
FatI	CATG	9 cut(s)	218, 310, 567, 585, 623, 644, 789, 855, 954
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	1 cut(s)	628
FokI	GGATG	3 cut(s)	20, 488, 744
FriOI	GRGCYC	1 cut(s)	876
Fsp4HI	GCNGC	1 cut(s)	628
FspI	TGCGCA	1 cut(s)	204
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	628
HaeIII	GGCC	2 cut(s)	162, 440
HapII	CCGG	3 cut(s)	174, 186, 229
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	9 cut(s)	222, 314, 571, 589, 627, 648, 793, 859, 958
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	7 cut(s)	179, 388, 620, 709, 737, 810, 924
HpaI	GTTAAC	1 cut(s)	114
HpaII	CCGG	3 cut(s)	174, 186, 229
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	4 cut(s)	114, 361, 685, 778
Hpy188I	TCNGA	5 cut(s)	97, 289, 343, 755, 878
Hpy188III	TCNNGA	2 cut(s)	713, 893
Hpy8I	GTNNAC	4 cut(s)	114, 361, 685, 778
Hpy99I	CGWCG	1 cut(s)	833
HpyAV	CCTTC	7 cut(s)	40, 73, 78, 288, 455, 519, 521
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	3 cut(s)	110, 363, 831
HpyCH4V	TGCA	7 cut(s)	13, 247, 265, 314, 547, 556, 627
HpyF10VI	GCNNNNNNNGC	4 cut(s)	195, 211, 425, 553
HpyF3I	CTNAG	2 cut(s)	714, 875
HpySE526I	ACGT	3 cut(s)	110, 363, 831
Hsp92II	CATG	9 cut(s)	222, 314, 571, 589, 627, 648, 793, 859, 958
HspAI	GCGC	1 cut(s)	203
KspAI	GTTAAC	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	573
LmnI	GCTCC	3 cut(s)	344, 795, 871
Lsp1109I	GCAGC	1 cut(s)	639
LweI	GCATC	2 cut(s)	357, 983
MaeII	ACGT	3 cut(s)	110, 363, 831
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	1 cut(s)	575
MboI	GATC	1 cut(s)	573
MboII	GAAGA	6 cut(s)	50, 117, 583, 668, 771, 1006
MhlI	GDGCHC	1 cut(s)	876
MluCI	AATT	3 cut(s)	91, 843, 932
MlyI	GAGTC	3 cut(s)	173, 397, 614
MmeI	TCCRAC	2 cut(s)	366, 595
MseI	TTAA	4 cut(s)	113, 147, 165, 275
MspI	CCGG	3 cut(s)	174, 186, 229
MspR9I	CCNGG	4 cut(s)	186, 230, 321, 921
Mva1269I	GAATGC	2 cut(s)	430, 630
MvaI	CCWGG	2 cut(s)	321, 921
MwoI	GCNNNNNNNGC	4 cut(s)	195, 211, 425, 553
NciI	CCSGG	2 cut(s)	186, 230
NcoI	CCATGG	1 cut(s)	644
NdeII	GATC	1 cut(s)	573
NlaIII	CATG	9 cut(s)	222, 314, 571, 589, 627, 648, 793, 859, 958
NlaIV	GGNNCC	2 cut(s)	354, 861
NmeAIII	GCCGAG	2 cut(s)	438, 562
NmuCI	GTSAC	1 cut(s)	389
NsbI	TGCGCA	1 cut(s)	204
PctI	GAATGC	2 cut(s)	430, 630
PfeI	GAWTC	4 cut(s)	709, 737, 810, 924
PfoI	TCCNGGA	1 cut(s)	919
PkrI	GCNGC	1 cut(s)	629
PleI	GAGTC	3 cut(s)	173, 396, 614
PpsI	GAGTC	3 cut(s)	173, 396, 614
Ppu21I	YACGTR	1 cut(s)	364
PpuMI	RGGWCCY	1 cut(s)	860
Psp124BI	GAGCTC	1 cut(s)	876
Psp5II	RGGWCCY	1 cut(s)	860
Psp6I	CCWGG	2 cut(s)	319, 919
PspGI	CCWGG	2 cut(s)	319, 919
PspN4I	GGNNCC	2 cut(s)	354, 861
PspPI	GGNCC	4 cut(s)	160, 439, 506, 860
PspPPI	RGGWCCY	1 cut(s)	860
RsaI	GTAC	4 cut(s)	362, 518, 719, 953
RsaNI	GTAC	4 cut(s)	361, 517, 718, 952
SacI	GAGCTC	1 cut(s)	876
SaqAI	TTAA	4 cut(s)	113, 147, 165, 275
SatI	GCNGC	1 cut(s)	628
Sau3AI	GATC	1 cut(s)	573
Sau96I	GGNCC	4 cut(s)	160, 439, 506, 860
SchI	GAGTC	3 cut(s)	173, 397, 614
ScrFI	CCNGG	4 cut(s)	186, 230, 321, 921
SduI	GDGCHC	1 cut(s)	876
SfaNI	GCATC	2 cut(s)	357, 983
SinI	GGWCC	2 cut(s)	506, 860
Sse9I	AATT	3 cut(s)	91, 843, 932
SsiI	CCGC	2 cut(s)	374, 603
SstI	GAGCTC	1 cut(s)	876
StyD4I	CCNGG	4 cut(s)	184, 228, 319, 919
StyI	CCWWGG	3 cut(s)	644, 726, 966
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	3 cut(s)	113, 366, 834
TaqI	TCGA	1 cut(s)	576
TasI	AATT	3 cut(s)	91, 843, 932
TatI	WGTACW	3 cut(s)	516, 717, 951
TfiI	GAWTC	4 cut(s)	709, 737, 810, 924
Tru1I	TTAA	4 cut(s)	113, 147, 165, 275
Tru9I	TTAA	4 cut(s)	113, 147, 165, 275
TscAI	CASTG	2 cut(s)	605, 993
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	1 cut(s)	627
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	7 cut(s)	22, 299, 437, 584, 584, 729, 802
TspGWI	ACGGA	4 cut(s)	110, 408, 519, 918
TspRI	CASTG	2 cut(s)	605, 993
VpaK11BI	GGWCC	2 cut(s)	506, 860
XapI	RAATTY	2 cut(s)	843, 932
XmiI	GTMKAC	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.