Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004661

Physical Location & Seq

Genomic Coordinates Reverse (-)

24114613 .. 24116282

Gene Structure 1670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG238300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGACGTTAACGCTTCGTTCTTCAACGTCTTTCATTAATCTTAAAGAGTACTCCAAAAGCCTGAAGAGCTCCGATGAGTCCTCGGATGTAGTTTGCTTTGCGCAAATCAAGCTATCATGCTGCATCCGGGCAAAGAGTTCCCTGCAAGAAGCACAGCTCTTCCAGGAAAGAATCAGGGTGAGCACCACCACTGATGAACTCCCGAGGGAGTTGCTTCACGCACTCCCAAATATAGCTCATAGCAGCAATAACAACGACTCCAAGAAGAATGCAGGAGTAGAAGGAGTTATGGTGGATGCTTGGTGGGGATTGGTCGAGAAAGACGGACCTTCCAAGTACCACTGGGAAGGGTATGCAGAGCTTGTGAACTTGGTCCAAAAGCATGGCTTGAAGATTCAAGTTGTCATGTATTCTTTCCATCAGTGTGGAGGAAATGTTGGTGACTCATGCAGTATTCCACTACCTCCATGGTTGCTTGAAGAGATAAGCAAGAACCCTGACCTTGTGTACACAGACAAATCTGGTAGGAGGAATCCTGAGTACATATCCTTGGGGTGTGATTCATCGCCTGTTTTCGGAGGAAGAACGCCCATCCAGTACATGAAAGCTTACCTGGAAGCATTAGCAGAGGCACAAGGAAAGAGAGATTGGGGAAGGACTGGACCCCATGATTCCGGTCGGTACAATCAGTTTCCTGATGACACCGGATTTTTCAAAAGAGATGGAACCTGGAATACCGAGTATGGACAGTTCTTCCTCGAATGCAAAAATGTTCAGCAACATGGAGTTGTTTTAAACTTCACCTGCATGGAAATGAAAGATGGAGAACAGCCTGACAATGCGAATTGCTCTCCTGAGGGGTTAGTCCGGCAAGTAAAGATGGCAACCAAGAGTGCTGGAATTGAACTTGCAGGAGAGAATGCACTGGAGAGGTATGATTCTGGTGCATATGGACAGGTTTTGGCCACAAGCAGATCAGATTCCAGCAATGCGTTGAGTGCTTTCACATACCTAAGATTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

341

Amino Acids

37.97

Weight (kDa)

5.73

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	87 - 210	3.1e-60	Glycosyl hydrolase family 14
Glyco_hydro_14	PF01373	200 - 255	3.4e-11	Glycosyl hydrolase family 14
Glyco_hydro_14	PF01373	256 - 341	4.8e-32	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17090
fragaria_vesca	FvH4_5g20800
malus_domestica	MD04G1056200.v1.1 MD06G1043900.v1.1 MD06G1044100.v1.1
prunus_persica	Prupe.5G051000_v2.0.a1
pyrus_communis	pycom04g04940 pycom06g03710 pycom06g03720
rosa_chinensis	RchiOBHm_Chr0c22g0500651 RchiOBHm_Chr7g0206601 RchiOBHm_Chr7g0207461 RchiOBHm_Chr7g0207721
rosa_laevigata	RLG00000003292
rosa_multiflora	Rmu_sc0007645.1_g000004 Rmu_sc0008509.1_g000004 Rmu_sc0008756.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251200 Rroxscaffold_3G00251330
rosa_rugosa	Rorug06G0115800 Rorug07G0099200
rosa_samantha	Rh7AG231100 Rh7AG231400 Rh7AG232400 Rh7BG227800 Rh7CG246000 Rh7DG238300 Rh7DG238600
rosa_wichuraiana	Rw0G021940 Rw7G019620 Rw7G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	812
Acc16I	TGCGCA	1 cut(s)	102
Acc36I	ACCTGC	1 cut(s)	812
AcoI	YGGCCR	1 cut(s)	963
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	6 cut(s)	50, 338, 509, 542, 599, 683
AfiI	CCNNNNNNNGG	1 cut(s)	575
AgsI	TTSAA	7 cut(s)	24, 391, 398, 479, 715, 905, 1021
AjnI	CCWGG	3 cut(s)	162, 612, 728
AjuI	GAANNNNNNNTTGG	2 cut(s)	631, 663
AluBI	AGCT	6 cut(s)	69, 112, 157, 236, 361, 608
AluI	AGCT	6 cut(s)	69, 112, 157, 236, 361, 608
Alw21I	GWGCWC	2 cut(s)	71, 185
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	1 cut(s)	963
ApeKI	GCWGC	2 cut(s)	120, 243
AseI	ATTAAT	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	3 cut(s)	326, 373, 662
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	3 cut(s)	190, 452, 793
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	3 cut(s)	326, 373, 662
AxyI	CCTNAGG	1 cut(s)	855
BalI	TGGCCA	1 cut(s)	965
BanII	GRGCYC	1 cut(s)	71
Bbv12I	GWGCWC	2 cut(s)	71, 185
BbvI	GCAGC	2 cut(s)	107, 255
BccI	CCATC	5 cut(s)	426, 599, 716, 815, 874
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BciT130I	CCWGG	3 cut(s)	164, 614, 730
BcnI	CCSGG	1 cut(s)	128
BfuAI	ACCTGC	1 cut(s)	812
BisI	GCNGC	2 cut(s)	121, 244
BlsI	GCNGC	2 cut(s)	122, 245
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	4 cut(s)	128, 164, 614, 730
Bme18I	GGWCC	3 cut(s)	326, 373, 662
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	3 cut(s)	326, 373, 662
BmiI	GGNNCC	2 cut(s)	664, 727
BmrFI	CCNGG	4 cut(s)	128, 164, 614, 730
BmrI	ACTGGG	1 cut(s)	352
BmsI	GCATC	2 cut(s)	132, 286
BmuI	ACTGGG	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	947
BpuMI	CCSGG	1 cut(s)	128
BsaJI	CCNNGG	4 cut(s)	81, 203, 467, 549
BsaWI	WCCGGW	2 cut(s)	674, 704
BsaXI	ACNNNNNCTCC	6 cut(s)	242, 272, 276, 306, 420, 450
Bsc4I	CCNNNNNNNGG	1 cut(s)	575
Bse1I	ACTGG	4 cut(s)	347, 595, 664, 930
Bse21I	CCTNAGG	1 cut(s)	855
Bse3DI	GCAATG	1 cut(s)	994
BseBI	CCWGG	3 cut(s)	164, 614, 730
BseDI	CCNNGG	4 cut(s)	81, 203, 467, 549
BseGI	GGATG	4 cut(s)	91, 123, 301, 591
BseLI	CCNNNNNNNGG	1 cut(s)	575
BseMI	GCAATG	1 cut(s)	994
BseMII	CTCAG	2 cut(s)	528, 846
BseNI	ACTGG	4 cut(s)	347, 595, 664, 930
BseXI	GCAGC	2 cut(s)	107, 255
Bsh1285I	CGRYCG	1 cut(s)	679
BshFI	GGCC	1 cut(s)	965
BsiEI	CGRYCG	1 cut(s)	679
BsiHKAI	GWGCWC	2 cut(s)	71, 185
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	4 cut(s)	127, 675, 705, 868
BslI	CCNNNNNNNGG	1 cut(s)	575
BsmI	GAATGC	3 cut(s)	274, 767, 925
BsnI	GGCC	1 cut(s)	965
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	71, 185
Bsp1407I	TGTACA	1 cut(s)	507
Bsp143I	GATC	1 cut(s)	974
Bsp19I	CCATGG	1 cut(s)	467
BspANI	GGCC	1 cut(s)	965
BspCNI	CTCAG	2 cut(s)	529, 847
BspLI	GGNNCC	2 cut(s)	664, 727
BspMI	ACCTGC	1 cut(s)	812
BspQI	GCTCTTC	2 cut(s)	59, 164
BsrDI	GCAATG	1 cut(s)	994
BsrGI	TGTACA	1 cut(s)	507
BsrI	ACTGG	4 cut(s)	347, 595, 664, 930
BssECI	CCNNGG	4 cut(s)	81, 203, 467, 549
BssMI	GATC	1 cut(s)	974
BssT1I	CCWWGG	2 cut(s)	467, 549
Bst2UI	CCWGG	3 cut(s)	164, 614, 730
Bst4CI	ACNGT	1 cut(s)	750
Bst6I	CTCTTC	3 cut(s)	59, 164, 474
BstAUI	TGTACA	1 cut(s)	507
BstDEI	CTNAG	3 cut(s)	537, 855, 1013
BstDSI	CCRYGG	1 cut(s)	467
BstF5I	GGATG	4 cut(s)	91, 123, 301, 591
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	1 cut(s)	977
BstMBI	GATC	1 cut(s)	974
BstMCI	CGRYCG	1 cut(s)	679
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 109, 998
BstNI	CCWGG	3 cut(s)	164, 614, 730
BstSCI	CCNGG	4 cut(s)	126, 162, 612, 728
BstV1I	GCAGC	2 cut(s)	107, 255
BstXI	CCANNNNNNTGG	2 cut(s)	383, 425
Bsu36I	CCTNAGG	1 cut(s)	855
BsuRI	GGCC	1 cut(s)	965
BtgI	CCRYGG	1 cut(s)	467
BtgZI	GCGATG	1 cut(s)	549
BtsCI	GGATG	4 cut(s)	91, 123, 301, 591
BtsIMutI	CAGTG	4 cut(s)	189, 340, 428, 923
BveI	ACCTGC	1 cut(s)	812
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	3 cut(s)	326, 373, 662
Csp6I	GTAC	6 cut(s)	49, 337, 508, 541, 598, 682
CviAII	CATG	9 cut(s)	117, 383, 406, 447, 468, 601, 668, 782, 808
CviQI	GTAC	6 cut(s)	49, 337, 508, 541, 598, 682
DdeI	CTNAG	3 cut(s)	537, 855, 1013
DpnI	GATC	1 cut(s)	976
DpnII	GATC	1 cut(s)	974
DraI	TTTAAA	1 cut(s)	795
EaeI	YGGCCR	1 cut(s)	963
Eam1104I	CTCTTC	3 cut(s)	59, 164, 474
EarI	CTCTTC	3 cut(s)	59, 164, 474
Ecl136II	GAGCTC	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	467, 549
Eco24I	GRGCYC	1 cut(s)	71
Eco47I	GGWCC	3 cut(s)	326, 373, 662
Eco53kI	GAGCTC	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	83
Eco81I	CCTNAGG	1 cut(s)	855
Eco88I	CYCGRG	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	69
EcoRII	CCWGG	3 cut(s)	162, 612, 728
EcoT14I	CCWWGG	2 cut(s)	467, 549
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	2 cut(s)	467, 549
FaeI	CATG	9 cut(s)	120, 386, 409, 450, 471, 604, 671, 785, 811
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FatI	CATG	9 cut(s)	116, 382, 405, 446, 467, 600, 667, 781, 807
FauNDI	CATATG	1 cut(s)	949
Fnu4HI	GCNGC	2 cut(s)	121, 244
FokI	GGATG	4 cut(s)	98, 110, 308, 578
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	121, 244
FspI	TGCGCA	1 cut(s)	102
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	2 cut(s)	121, 244
GsuI	CTGGAG	1 cut(s)	947
HaeIII	GGCC	1 cut(s)	965
HapII	CCGG	4 cut(s)	127, 675, 705, 868
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	9 cut(s)	120, 386, 409, 450, 471, 604, 671, 785, 811
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	606
HpaI	GTTAAC	1 cut(s)	9
HpaII	CCGG	4 cut(s)	127, 675, 705, 868
HphI	GGTGA	3 cut(s)	190, 452, 793
Hpy166II	GTNNAC	4 cut(s)	9, 367, 508, 510
Hpy188I	TCNGA	4 cut(s)	73, 85, 578, 979
Hpy188III	TCNNGA	5 cut(s)	202, 316, 536, 695, 854
Hpy8I	GTNNAC	4 cut(s)	9, 367, 508, 510
HpyAV	CCTTC	4 cut(s)	275, 339, 341, 648
HpyCH4III	ACNGT	1 cut(s)	750
HpyCH4IV	ACGT	2 cut(s)	5, 26
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 109, 998
HpyF3I	CTNAG	3 cut(s)	537, 855, 1013
HpySE526I	ACGT	2 cut(s)	5, 26
Hsp92II	CATG	9 cut(s)	120, 386, 409, 450, 471, 604, 671, 785, 811
HspAI	GCGC	1 cut(s)	101
KspAI	GTTAAC	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	974
LguI	GCTCTTC	2 cut(s)	59, 164
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	2 cut(s)	107, 255
LweI	GCATC	2 cut(s)	132, 286
MaeII	ACGT	2 cut(s)	5, 26
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	1 cut(s)	976
MboI	GATC	1 cut(s)	974
MboII	GAAGA	8 cut(s)	12, 76, 151, 277, 403, 491, 594, 745
MhlI	GDGCHC	2 cut(s)	71, 185
MlsI	TGGCCA	1 cut(s)	965
MluCI	AATT	3 cut(s)	844, 900, 1021
MluNI	TGGCCA	1 cut(s)	965
MlyI	GAGTC	3 cut(s)	86, 251, 437
Mox20I	TGGCCA	1 cut(s)	965
MscI	TGGCCA	1 cut(s)	965
MseI	TTAA	4 cut(s)	8, 36, 42, 794
MslI	CAYNNNNRTG	3 cut(s)	423, 806, 812
Msp20I	TGGCCA	1 cut(s)	965
MspI	CCGG	4 cut(s)	127, 675, 705, 868
MspR9I	CCNGG	4 cut(s)	128, 164, 614, 730
Mva1269I	GAATGC	3 cut(s)	274, 767, 925
MvaI	CCWGG	3 cut(s)	164, 614, 730
MwoI	GCNNNNNNNGC	3 cut(s)	66, 109, 998
NciI	CCSGG	1 cut(s)	128
NcoI	CCATGG	1 cut(s)	467
NdeI	CATATG	1 cut(s)	949
NdeII	GATC	1 cut(s)	974
NlaIII	CATG	9 cut(s)	120, 386, 409, 450, 471, 604, 671, 785, 811
NlaIV	GGNNCC	2 cut(s)	664, 727
NmuCI	GTSAC	1 cut(s)	440
NsbI	TGCGCA	1 cut(s)	102
PaqCI	CACCTGC	1 cut(s)	812
PciSI	GCTCTTC	2 cut(s)	59, 164
PctI	GAATGC	3 cut(s)	274, 767, 925
PfeI	GAWTC	7 cut(s)	171, 394, 532, 560, 671, 938, 980
PfoI	TCCNGGA	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	122, 245
PleI	GAGTC	3 cut(s)	85, 251, 437
PpsI	GAGTC	3 cut(s)	85, 251, 437
PshBI	ATTAAT	1 cut(s)	36
Psp124BI	GAGCTC	1 cut(s)	71
Psp6I	CCWGG	3 cut(s)	162, 612, 728
PspGI	CCWGG	3 cut(s)	162, 612, 728
PspN4I	GGNNCC	2 cut(s)	664, 727
PspPI	GGNCC	3 cut(s)	326, 373, 662
PsrI	GAACNNNNNNTAC	4 cut(s)	718, 734, 750, 766
RsaI	GTAC	6 cut(s)	50, 338, 509, 542, 599, 683
RsaNI	GTAC	6 cut(s)	49, 337, 508, 541, 598, 682
RseI	CAYNNNNRTG	3 cut(s)	423, 806, 812
SacI	GAGCTC	1 cut(s)	71
SapI	GCTCTTC	2 cut(s)	59, 164
SaqAI	TTAA	4 cut(s)	8, 36, 42, 794
SatI	GCNGC	2 cut(s)	121, 244
Sau3AI	GATC	1 cut(s)	974
Sau96I	GGNCC	3 cut(s)	326, 373, 662
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	3 cut(s)	86, 251, 437
ScrFI	CCNGG	4 cut(s)	128, 164, 614, 730
SduI	GDGCHC	2 cut(s)	71, 185
SfaNI	GCATC	2 cut(s)	132, 286
SinI	GGWCC	3 cut(s)	326, 373, 662
SmiMI	CAYNNNNRTG	3 cut(s)	423, 806, 812
Sse9I	AATT	3 cut(s)	844, 900, 1021
SstI	GAGCTC	1 cut(s)	71
StyD4I	CCNGG	4 cut(s)	126, 162, 612, 728
StyI	CCWWGG	2 cut(s)	467, 549
TaaI	ACNGT	1 cut(s)	750
TaiI	ACGT	2 cut(s)	8, 29
TaqI	TCGA	2 cut(s)	315, 759
TasI	AATT	3 cut(s)	844, 900, 1021
TatI	WGTACW	4 cut(s)	48, 507, 540, 597
TfiI	GAWTC	7 cut(s)	171, 394, 532, 560, 671, 938, 980
Tru1I	TTAA	4 cut(s)	8, 36, 42, 794
Tru9I	TTAA	4 cut(s)	8, 36, 42, 794
TscAI	CASTG	4 cut(s)	196, 347, 428, 930
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	2 cut(s)	120, 243
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	5 cut(s)	22, 210, 552, 617, 830
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	4 cut(s)	196, 347, 428, 930
VpaK11BI	GGWCC	3 cut(s)	326, 373, 662
VspI	ATTAAT	1 cut(s)	36
XcmI	CCANNNNNNNNNTGG	1 cut(s)	465
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.