Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004661

Physical Location & Seq

Genomic Coordinates Reverse (-)

4567487 .. 4569465

Gene Structure 1979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGACGTTAACTCTCCATTCTTCAACTTCGTTCGTCAATCCTAAAGACCACAAGGGCCTGAAAACCTCCGATGACTCCCCCGGCACGATATACTTTGCGCAAATCAAGCCATCATGCCGTCTCCGGGCAAAGAGTTCAATGCAAGAAACACAGCTCTTGCATGAGAAGAACTTAATGACTATCTCCGATGGAAGGAGAGAGTTGCTCCACGCACTCCCAAATACTGCTCACAGCAGCACTGACAACAAGGTGCCTGTGTATGTGATGCTCCCGCTCGACACGGTGAGTCACGGAGGGCATTTGAATAAGCCAAGAGCAATGAATGCGAGTTTGATGGCCCTGAAGCAAGCAGGGGTTGAAGGAGTTATGGTGGATGCGTGGTGGGGATTGGTGGAGAAGGACGGACCTTCCCAGTACAATTGGGAAGGGTATGATGAGCTTGTGCAGATGGTGCAAAAGCATGGCATGAAAATCCAAGTCGTCATGTCTTTTCATCAGTGTGGAGGAAATGTTGGAGACTCATGCAGCATTCCTCTACCTCCATGGGTGCTTGAAGAAATCAGCAAGAATCCTGACCTTGTTTACACAGACAAATCAGGCAGGAGGAATCCTGAGTACATATCCTTGGGATGCGATTCATTGCCTGTTCTCAGAGGAAGAACTCCCATTCAGGTCTACACCGATTACATGAGGAGCTTCCGCGACAGATTCATTGACTACTTGGGCGATGTTATTGTGGAAATTCAAGTAGGCATGGGTCCTTGTGGGGAGCTCAGATATCCAGCTTATCCAGAAAGCAACGGAACATGGAGGTTTCCTGGAATTGGAGAATTCCAATGCTATGACAAGTACATGAGAGCTTCCCTGGAAGCATCAGCAGAGGCACTGGGGAAGAGAGATTGGGGAAGAAGTGGACCACATGATTCCGGCCACTACAATCAATTTCCTGAAGACACAGGATTTTTCAAAAGGGATGGAACTTGGAACACTGAGTATGGACAGTTCTTCCTTGAATGGTACTCCGGAAAGCTACTAAGACACGGAGATAGAATACTGTCAGCTGCAAAAGGGGTATTCCAAGGATCATCCCAGTGGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

367

Amino Acids

41.25

Weight (kDa)

6.46

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17090
fragaria_vesca	FvH4_5g20800
malus_domestica	MD04G1056200.v1.1 MD06G1043900.v1.1 MD06G1044100.v1.1
prunus_persica	Prupe.5G051000_v2.0.a1
pyrus_communis	pycom04g04940 pycom06g03710 pycom06g03720
rosa_chinensis	RchiOBHm_Chr0c22g0500651 RchiOBHm_Chr7g0206601 RchiOBHm_Chr7g0207461 RchiOBHm_Chr7g0207721
rosa_laevigata	RLG00000003292
rosa_multiflora	Rmu_sc0007645.1_g000004 Rmu_sc0008509.1_g000004 Rmu_sc0008756.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251200 Rroxscaffold_3G00251330
rosa_rugosa	Rorug06G0115800 Rorug07G0099200
rosa_samantha	Rh7AG231100 Rh7AG231400 Rh7AG232400 Rh7BG227800 Rh7CG246000 Rh7DG238300 Rh7DG238600
rosa_wichuraiana	Rw0G021940 Rw7G019620 Rw7G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	99
AccB1I	GGYRCC	1 cut(s)	250
AccBSI	CCGCTC	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	675
AccII	CGCG	1 cut(s)	702
AccIII	TCCGGA	1 cut(s)	1022
AciI	CCGC	2 cut(s)	272, 700
AclWI	GGATC	1 cut(s)	1090
AcoI	YGGCCR	1 cut(s)	928
AcsI	RAATTY	2 cut(s)	741, 830
AcuI	CTGAAG	2 cut(s)	362, 969
AfaI	GTAC	4 cut(s)	416, 617, 851, 1019
AfiI	CCNNNNNNNGG	3 cut(s)	124, 192, 824
AgsI	TTSAA	8 cut(s)	24, 138, 304, 359, 554, 746, 967, 1013
AjnI	CCWGG	2 cut(s)	817, 864
AluBI	AGCT	8 cut(s)	154, 439, 696, 772, 785, 860, 1030, 1061
AluI	AGCT	8 cut(s)	154, 439, 696, 772, 785, 860, 1030, 1061
Alw21I	GWGCWC	1 cut(s)	774
Alw26I	GTCTC	2 cut(s)	125, 510
AlwI	GGATC	1 cut(s)	1090
Aor13HI	TCCGGA	1 cut(s)	1022
AoxI	GGCC	3 cut(s)	55, 336, 928
ApeKI	GCWGC	3 cut(s)	234, 525, 1061
ApoI	RAATTY	2 cut(s)	741, 830
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	5 cut(s)	55, 337, 404, 758, 914
AsuC2I	CCSGG	2 cut(s)	81, 125
AsuHPI	GGTGA	1 cut(s)	295
AvaII	GGWCC	3 cut(s)	404, 758, 914
BanI	GGYRCC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	774
BbsI	GAAGAC	1 cut(s)	957
Bbv12I	GWGCWC	1 cut(s)	774
BbvI	GCAGC	3 cut(s)	246, 537, 1048
BccI	CCATC	5 cut(s)	118, 182, 328, 442, 968
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	2 cut(s)	819, 866
BcnI	CCSGG	2 cut(s)	81, 125
BcoDI	GTCTC	2 cut(s)	125, 510
BisI	GCNGC	3 cut(s)	235, 526, 1062
BlsI	GCNGC	3 cut(s)	236, 527, 1063
Bme1390I	CCNGG	4 cut(s)	81, 125, 819, 866
Bme18I	GGWCC	3 cut(s)	404, 758, 914
BmgT120I	GGNCC	5 cut(s)	55, 337, 404, 758, 914
BmiI	GGNNCC	2 cut(s)	252, 759
BmrFI	CCNGG	4 cut(s)	81, 125, 819, 866
BmrI	ACTGGG	3 cut(s)	406, 896, 1084
BmsI	GCATC	4 cut(s)	255, 364, 620, 881
BmuI	ACTGGG	3 cut(s)	406, 896, 1084
BpiI	GAAGAC	1 cut(s)	957
BplI	GAGNNNNNCTC	2 cut(s)	189, 221
BpuMI	CCSGG	2 cut(s)	81, 125
BsaJI	CCNNGG	5 cut(s)	79, 542, 624, 864, 1078
BsaWI	WCCGGW	1 cut(s)	1022
BsaXI	ACNNNNNCTCC	4 cut(s)	354, 384, 495, 525
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 192, 824
Bse1I	ACTGG	3 cut(s)	412, 891, 1090
Bse3DI	GCAATG	2 cut(s)	324, 638
BseAI	TCCGGA	1 cut(s)	1022
BseBI	CCWGG	2 cut(s)	819, 866
BseDI	CCNNGG	5 cut(s)	79, 542, 624, 864, 1078
BseGI	GGATG	4 cut(s)	379, 635, 979, 1085
BseLI	CCNNNNNNNGG	3 cut(s)	124, 192, 824
BseMI	GCAATG	2 cut(s)	324, 638
BseMII	CTCAG	4 cut(s)	603, 664, 787, 981
BseNI	ACTGG	3 cut(s)	412, 891, 1090
BseRI	GAGGAG	1 cut(s)	706
BseXI	GCAGC	3 cut(s)	246, 537, 1048
BsgI	GTGCAG	1 cut(s)	464
Bsh1236I	CGCG	1 cut(s)	702
BshFI	GGCC	3 cut(s)	57, 338, 930
BshNI	GGYRCC	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	774
BsiSI	CCGG	4 cut(s)	81, 124, 927, 1023
BslI	CCNNNNNNNGG	3 cut(s)	124, 192, 824
BsmAI	GTCTC	2 cut(s)	125, 510
BsmBI	CGTCTC	1 cut(s)	125
BsmI	GAATGC	2 cut(s)	328, 528
BsnI	GGCC	3 cut(s)	57, 338, 930
Bsp1286I	GDGCHC	1 cut(s)	774
Bsp13I	TCCGGA	1 cut(s)	1022
Bsp143I	GATC	2 cut(s)	1082, 1095
Bsp19I	CCATGG	1 cut(s)	542
BspACI	CCGC	2 cut(s)	272, 700
BspANI	GGCC	3 cut(s)	57, 338, 930
BspCNI	CTCAG	4 cut(s)	604, 663, 786, 982
BspEI	TCCGGA	1 cut(s)	1022
BspFNI	CGCG	1 cut(s)	702
BspLI	GGNNCC	2 cut(s)	252, 759
BspPI	GGATC	1 cut(s)	1090
BspT107I	GGYRCC	1 cut(s)	250
BsrBI	CCGCTC	1 cut(s)	274
BsrDI	GCAATG	2 cut(s)	324, 638
BsrI	ACTGG	3 cut(s)	412, 891, 1090
BssECI	CCNNGG	5 cut(s)	79, 542, 624, 864, 1078
BssMI	GATC	2 cut(s)	1082, 1095
BssT1I	CCWWGG	3 cut(s)	542, 624, 1078
Bst2UI	CCWGG	2 cut(s)	819, 866
Bst4CI	ACNGT	3 cut(s)	283, 1002, 1056
Bst6I	CTCTTC	1 cut(s)	887
BstAPI	GCANNNNNTGC	2 cut(s)	323, 451
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	5 cut(s)	612, 650, 773, 990, 1034
BstDSI	CCRYGG	1 cut(s)	542
BstF5I	GGATG	4 cut(s)	379, 635, 979, 1085
BstFNI	CGCG	1 cut(s)	702
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	2 cut(s)	1085, 1098
BstMAI	GTCTC	2 cut(s)	125, 510
BstMBI	GATC	2 cut(s)	1082, 1095
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 323, 451
BstNI	CCWGG	2 cut(s)	819, 866
BstSCI	CCNGG	4 cut(s)	79, 123, 817, 864
BstUI	CGCG	1 cut(s)	702
BstV1I	GCAGC	3 cut(s)	246, 537, 1048
BstV2I	GAAGAC	1 cut(s)	957
BstX2I	RGATCY	1 cut(s)	1095
BstYI	RGATCY	1 cut(s)	1095
BsuRI	GGCC	3 cut(s)	57, 338, 930
BtgI	CCRYGG	1 cut(s)	542
BtgZI	GCGATG	1 cut(s)	741
BtsCI	GGATG	4 cut(s)	379, 635, 979, 1085
BtsIMutI	CAGTG	5 cut(s)	237, 503, 884, 987, 1097
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	5 cut(s)	55, 337, 404, 758, 914
Csp6I	GTAC	4 cut(s)	415, 616, 850, 1018
CviQI	GTAC	4 cut(s)	415, 616, 850, 1018
DdeI	CTNAG	5 cut(s)	612, 650, 773, 990, 1034
DpnI	GATC	2 cut(s)	1084, 1097
DpnII	GATC	2 cut(s)	1082, 1095
EaeI	YGGCCR	1 cut(s)	928
Eam1104I	CTCTTC	1 cut(s)	887
EarI	CTCTTC	1 cut(s)	887
Ecl136II	GAGCTC	1 cut(s)	772
Eco130I	CCWWGG	3 cut(s)	542, 624, 1078
Eco24I	GRGCYC	1 cut(s)	774
Eco32I	GATATC	1 cut(s)	779
Eco47I	GGWCC	3 cut(s)	404, 758, 914
Eco53kI	GAGCTC	1 cut(s)	772
Eco57I	CTGAAG	2 cut(s)	362, 969
EcoICRI	GAGCTC	1 cut(s)	772
EcoO109I	RGGNCCY	2 cut(s)	55, 758
EcoRI	GAATTC	1 cut(s)	830
EcoRII	CCWGG	2 cut(s)	817, 864
EcoRV	GATATC	1 cut(s)	779
EcoT14I	CCWWGG	3 cut(s)	542, 624, 1078
EcoT38I	GRGCYC	1 cut(s)	774
ErhI	CCWWGG	3 cut(s)	542, 624, 1078
Esp3I	CGTCTC	1 cut(s)	125
FauI	CCCGC	1 cut(s)	279
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	3 cut(s)	235, 526, 1062
FokI	GGATG	4 cut(s)	386, 642, 986, 1072
FriOI	GRGCYC	1 cut(s)	774
Fsp4HI	GCNGC	3 cut(s)	235, 526, 1062
FspI	TGCGCA	1 cut(s)	99
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	3 cut(s)	235, 526, 1062
HaeIII	GGCC	3 cut(s)	57, 338, 930
HapII	CCGG	4 cut(s)	81, 124, 927, 1023
HhaI	GCGC	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	8 cut(s)	74, 286, 518, 568, 607, 635, 708, 923
HpaI	GTTAAC	1 cut(s)	9
HpaII	CCGG	4 cut(s)	81, 124, 927, 1023
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	4 cut(s)	9, 583, 676, 914
Hpy188I	TCNGA	4 cut(s)	70, 187, 653, 776
Hpy188III	TCNNGA	5 cut(s)	572, 611, 791, 947, 1023
Hpy8I	GTNNAC	4 cut(s)	9, 583, 676, 914
HpyAV	CCTTC	5 cut(s)	186, 353, 391, 417, 419
HpyCH4III	ACNGT	3 cut(s)	283, 1002, 1056
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	6 cut(s)	142, 160, 445, 454, 525, 1064
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 323, 451
HpyF3I	CTNAG	5 cut(s)	612, 650, 773, 990, 1034
HpySE526I	ACGT	1 cut(s)	5
HspAI	GCGC	1 cut(s)	98
Kpn2I	TCCGGA	1 cut(s)	1022
KspAI	GTTAAC	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	1082, 1095
LmnI	GCTCC	4 cut(s)	210, 273, 693, 769
Lsp1109I	GCAGC	3 cut(s)	246, 537, 1048
LweI	GCATC	4 cut(s)	255, 364, 620, 881
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	2 cut(s)	1084, 1097
MbiI	CCGCTC	1 cut(s)	274
MboI	GATC	2 cut(s)	1082, 1095
MboII	GAAGA	8 cut(s)	12, 178, 566, 669, 904, 918, 962, 997
MfeI	CAATTG	1 cut(s)	418
MflI	RGATCY	1 cut(s)	1095
MhlI	GDGCHC	1 cut(s)	774
MluCI	AATT	5 cut(s)	418, 741, 822, 830, 941
MlyI	GAGTC	3 cut(s)	68, 295, 512
MmeI	TCCRAC	1 cut(s)	493
MroI	TCCGGA	1 cut(s)	1022
MseI	TTAA	2 cut(s)	8, 173
MslI	CAYNNNNRTG	2 cut(s)	498, 1090
MspA1I	CMGCKG	1 cut(s)	1061
MspI	CCGG	4 cut(s)	81, 124, 927, 1023
MspR9I	CCNGG	4 cut(s)	81, 125, 819, 866
MunI	CAATTG	1 cut(s)	418
Mva1269I	GAATGC	2 cut(s)	328, 528
MvaI	CCWGG	2 cut(s)	819, 866
MvnI	CGCG	1 cut(s)	702
MwoI	GCNNNNNNNGC	3 cut(s)	106, 323, 451
NciI	CCSGG	2 cut(s)	81, 125
NcoI	CCATGG	1 cut(s)	542
NdeII	GATC	2 cut(s)	1082, 1095
NlaIV	GGNNCC	2 cut(s)	252, 759
NmuCI	GTSAC	1 cut(s)	287
NsbI	TGCGCA	1 cut(s)	99
PctI	GAATGC	2 cut(s)	328, 528
PfeI	GAWTC	5 cut(s)	568, 607, 635, 708, 923
PfoI	TCCNGGA	1 cut(s)	817
PkrI	GCNGC	3 cut(s)	236, 527, 1063
PleI	GAGTC	3 cut(s)	68, 294, 512
PpsI	GAGTC	3 cut(s)	68, 294, 512
PpuMI	RGGWCCY	1 cut(s)	758
Psp124BI	GAGCTC	1 cut(s)	774
Psp5II	RGGWCCY	1 cut(s)	758
Psp6I	CCWGG	2 cut(s)	817, 864
PspGI	CCWGG	2 cut(s)	817, 864
PspN4I	GGNNCC	2 cut(s)	252, 759
PspPI	GGNCC	5 cut(s)	55, 337, 404, 758, 914
PspPPI	RGGWCCY	1 cut(s)	758
PsrI	GAACNNNNNNTAC	2 cut(s)	986, 1018
PsuI	RGATCY	1 cut(s)	1095
PvuII	CAGCTG	1 cut(s)	1061
RsaI	GTAC	4 cut(s)	416, 617, 851, 1019
RsaNI	GTAC	4 cut(s)	415, 616, 850, 1018
RseI	CAYNNNNRTG	2 cut(s)	498, 1090
SacI	GAGCTC	1 cut(s)	774
SaqAI	TTAA	2 cut(s)	8, 173
SatI	GCNGC	3 cut(s)	235, 526, 1062
Sau3AI	GATC	2 cut(s)	1082, 1095
Sau96I	GGNCC	5 cut(s)	55, 337, 404, 758, 914
SchI	GAGTC	3 cut(s)	68, 295, 512
ScrFI	CCNGG	4 cut(s)	81, 125, 819, 866
SduI	GDGCHC	1 cut(s)	774
SfaNI	GCATC	4 cut(s)	255, 364, 620, 881
SinI	GGWCC	3 cut(s)	404, 758, 914
SmiMI	CAYNNNNRTG	2 cut(s)	498, 1090
Sse9I	AATT	5 cut(s)	418, 741, 822, 830, 941
SsiI	CCGC	2 cut(s)	272, 700
SstI	GAGCTC	1 cut(s)	774
StyD4I	CCNGG	4 cut(s)	79, 123, 817, 864
StyI	CCWWGG	3 cut(s)	542, 624, 1078
TaaI	ACNGT	3 cut(s)	283, 1002, 1056
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	276
TasI	AATT	5 cut(s)	418, 741, 822, 830, 941
TatI	WGTACW	3 cut(s)	414, 615, 849
TfiI	GAWTC	5 cut(s)	568, 607, 635, 708, 923
Tru1I	TTAA	2 cut(s)	8, 173
Tru9I	TTAA	2 cut(s)	8, 173
TscAI	CASTG	5 cut(s)	244, 503, 891, 994, 1097
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	3 cut(s)	234, 525, 1061
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	5 cut(s)	335, 482, 482, 627, 700
TspGWI	ACGGA	4 cut(s)	306, 417, 816, 1056
TspRI	CASTG	5 cut(s)	244, 503, 891, 994, 1097
VpaK11BI	GGWCC	3 cut(s)	404, 758, 914
XapI	RAATTY	2 cut(s)	741, 830
XmiI	GTMKAC	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.