Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008509.1

Orthogroup ID

OG0004661

Physical Location & Seq

Genomic Coordinates Reverse (-)

24837 .. 26446

Gene Structure 1610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008509.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

atgacgttaacgcttcgttcttcaacgtctttcattaatcttaaagagtactccaaaagcctgaagagctccgatgagtcctcggatgtagtttgctttgcgcaaatcaagctatcatgctgcatccgggcaaagagttccctgcaagaagcacagctcttccaggaaagaatcagggtgagcaccaccactgatgatctcccgagggagttgcttcacgcactcccaaatatagctcatagcagtaataacaacgactccaagaaggtgcctgtgtatgtgatgcttccactagacacagtgacgcatggagggcatttgaacaagccaacagcaatgaatgcgagtttgatggctttgaagaatgcaggagtagaaggagttatggtggatgcttggtggggattggtcgagaaagacggaccttccaagtaccactgggaaggatatgcagagcttgtgaacttggtccaaaagcatggcttgaagattcaagttgtcatgtattctttccatcagtgtggaggaaatgttggtgactcatgcagtattccactacctccatggttgcttgaagagataagcaagaaccctgaccttgtgtacacagacaaatctggtaggaggaatcctgagtacatatccttggggtgtgattcaacgcctgttttcggaggaagaacgcccatccaggtttataccgactacatgcagagcttccaagacagattcagagattacttgggagactacatgaaagcttacctggaagcattagcagaggcacaaggaaagagagattggggatggactggaccccatgattccggtcggagtgctccaaggaaagctaaactatctggaaaggtagctgggagtcattggcactacagaacaagatcccatgctgctgaattaactgctggctgctatactactagacttagagatggttacataccaacagcaaaaatgttcagcaaacatggggttgtattaaacttcacctgcatggaaatgaaagatggagaacagcctgacaatgcgaattgctctcctgaggggttagtccggcaagtaaagatggcaaccaagagtgctggaattgaacgtgcaggagagaatgcactggagaggtatgattctggtgcatatggacaggttttggccacaagcagatcagattccagcaatgcgttgagtgctttcacatacctaagattgaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

409

Amino Acids

45.39

Weight (kDa)

8.25

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17090
fragaria_vesca	FvH4_5g20800
malus_domestica	MD04G1056200.v1.1 MD06G1043900.v1.1 MD06G1044100.v1.1
prunus_persica	Prupe.5G051000_v2.0.a1
pyrus_communis	pycom04g04940 pycom06g03710 pycom06g03720
rosa_chinensis	RchiOBHm_Chr0c22g0500651 RchiOBHm_Chr7g0206601 RchiOBHm_Chr7g0207461 RchiOBHm_Chr7g0207721
rosa_laevigata	RLG00000003292
rosa_multiflora	Rmu_sc0007645.1_g000004 Rmu_sc0008509.1_g000004 Rmu_sc0008756.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251200 Rroxscaffold_3G00251330
rosa_rugosa	Rorug06G0115800 Rorug07G0099200
rosa_samantha	Rh7AG231100 Rh7AG231400 Rh7AG232400 Rh7BG227800 Rh7CG246000 Rh7DG238300 Rh7DG238600
rosa_wichuraiana	Rw0G021940 Rw7G019620 Rw7G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1016
Acc16I	TGCGCA	1 cut(s)	102
Acc36I	ACCTGC	1 cut(s)	1016
AccB1I	GGYRCC	1 cut(s)	268
AclWI	GGATC	1 cut(s)	894
AcoI	YGGCCR	1 cut(s)	1167
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	4 cut(s)	50, 434, 605, 638
AfiI	CCNNNNNNNGG	1 cut(s)	671
AgsI	TTSAA	9 cut(s)	24, 322, 361, 487, 494, 575, 660, 1109, 1225
AjnI	CCWGG	3 cut(s)	162, 690, 765
AjuI	GAANNNNNNNTTGG	2 cut(s)	784, 816
AluBI	AGCT	9 cut(s)	69, 112, 157, 236, 457, 717, 761, 851, 872
AluI	AGCT	9 cut(s)	69, 112, 157, 236, 457, 717, 761, 851, 872
Alw21I	GWGCWC	3 cut(s)	71, 185, 841
Alw26I	GTCTC	1 cut(s)	741
AlwI	GGATC	1 cut(s)	894
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	1 cut(s)	1167
ApeKI	GCWGC	3 cut(s)	120, 908, 927
AseI	ATTAAT	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	3 cut(s)	422, 469, 815
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	3 cut(s)	190, 548, 997
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	3 cut(s)	422, 469, 815
AxyI	CCTNAGG	1 cut(s)	1059
BalI	TGGCCA	1 cut(s)	1169
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	71
Bbv12I	GWGCWC	3 cut(s)	71, 185, 841
BbvI	GCAGC	3 cut(s)	107, 895, 914
BccI	CCATC	7 cut(s)	346, 522, 695, 801, 944, 1019, 1078
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BciT130I	CCWGG	3 cut(s)	164, 692, 767
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	741
BfaI	CTAG	2 cut(s)	293, 939
BfmI	CTRYAG	1 cut(s)	889
BfuAI	ACCTGC	1 cut(s)	1016
BisI	GCNGC	3 cut(s)	121, 909, 928
BlsI	GCNGC	3 cut(s)	122, 910, 929
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	4 cut(s)	128, 164, 692, 767
Bme18I	GGWCC	3 cut(s)	422, 469, 815
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	3 cut(s)	422, 469, 815
BmiI	GGNNCC	2 cut(s)	270, 817
BmrFI	CCNGG	4 cut(s)	128, 164, 692, 767
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	3 cut(s)	132, 273, 382
BmuI	ACTGGG	1 cut(s)	448
BpmI	CTGGAG	1 cut(s)	1151
BpuMI	CCSGG	1 cut(s)	128
BsaJI	CCNNGG	5 cut(s)	81, 203, 563, 645, 842
BsaWI	WCCGGW	1 cut(s)	827
BsaXI	ACNNNNNCTCC	6 cut(s)	242, 272, 372, 402, 516, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	671
Bse1I	ACTGG	3 cut(s)	443, 817, 1134
Bse21I	CCTNAGG	1 cut(s)	1059
Bse3DI	GCAATG	2 cut(s)	342, 1198
BseBI	CCWGG	3 cut(s)	164, 692, 767
BseDI	CCNNGG	5 cut(s)	81, 203, 563, 645, 842
BseGI	GGATG	5 cut(s)	91, 123, 397, 687, 812
BseLI	CCNNNNNNNGG	1 cut(s)	671
BseMI	GCAATG	2 cut(s)	342, 1198
BseMII	CTCAG	2 cut(s)	624, 1050
BseNI	ACTGG	3 cut(s)	443, 817, 1134
BseXI	GCAGC	3 cut(s)	107, 895, 914
BseYI	CCCAGC	1 cut(s)	872
BsgI	GTGCAG	1 cut(s)	1134
Bsh1285I	CGRYCG	1 cut(s)	832
BshFI	GGCC	1 cut(s)	1169
BshNI	GGYRCC	1 cut(s)	268
BsiEI	CGRYCG	1 cut(s)	832
BsiHKAI	GWGCWC	3 cut(s)	71, 185, 841
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	3 cut(s)	127, 828, 1072
BslI	CCNNNNNNNGG	1 cut(s)	671
BsmAI	GTCTC	1 cut(s)	741
BsmI	GAATGC	3 cut(s)	346, 370, 1129
BsnI	GGCC	1 cut(s)	1169
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	3 cut(s)	71, 185, 841
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	3 cut(s)	196, 899, 1178
Bsp19I	CCATGG	1 cut(s)	563
BspANI	GGCC	1 cut(s)	1169
BspCNI	CTCAG	2 cut(s)	625, 1051
BspLI	GGNNCC	2 cut(s)	270, 817
BspMI	ACCTGC	1 cut(s)	1016
BspPI	GGATC	1 cut(s)	894
BspQI	GCTCTTC	2 cut(s)	59, 164
BspT107I	GGYRCC	1 cut(s)	268
BsrDI	GCAATG	2 cut(s)	342, 1198
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	3 cut(s)	443, 817, 1134
BssECI	CCNNGG	5 cut(s)	81, 203, 563, 645, 842
BssMI	GATC	3 cut(s)	196, 899, 1178
BssT1I	CCWWGG	3 cut(s)	563, 645, 842
Bst2UI	CCWGG	3 cut(s)	164, 692, 767
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	3 cut(s)	59, 164, 570
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstAUI	TGTACA	1 cut(s)	603
BstC8I	GCNNGC	1 cut(s)	925
BstDEI	CTNAG	4 cut(s)	633, 944, 1059, 1217
BstDSI	CCRYGG	1 cut(s)	563
BstF5I	GGATG	5 cut(s)	91, 123, 397, 687, 812
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	3 cut(s)	199, 902, 1181
BstMAI	GTCTC	1 cut(s)	741
BstMBI	GATC	3 cut(s)	196, 899, 1178
BstMCI	CGRYCG	1 cut(s)	832
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 109, 313, 341, 1202
BstNI	CCWGG	3 cut(s)	164, 692, 767
BstNSI	RCATGY	1 cut(s)	712
BstSCI	CCNGG	4 cut(s)	126, 162, 690, 765
BstSFI	CTRYAG	1 cut(s)	889
BstV1I	GCAGC	3 cut(s)	107, 895, 914
BstX2I	RGATCY	1 cut(s)	899
BstXI	CCANNNNNNTGG	2 cut(s)	479, 521
BstYI	RGATCY	1 cut(s)	899
Bsu36I	CCTNAGG	1 cut(s)	1059
BsuRI	GGCC	1 cut(s)	1169
BtgI	CCRYGG	1 cut(s)	563
BtsCI	GGATG	5 cut(s)	91, 123, 397, 687, 812
BtsIMutI	CAGTG	5 cut(s)	189, 306, 436, 524, 1127
BveI	ACCTGC	1 cut(s)	1016
Cac8I	GCNNGC	1 cut(s)	925
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	3 cut(s)	422, 469, 815
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	4 cut(s)	49, 433, 604, 637
CviQI	GTAC	4 cut(s)	49, 433, 604, 637
DdeI	CTNAG	4 cut(s)	633, 944, 1059, 1217
DpnI	GATC	3 cut(s)	198, 901, 1180
DpnII	GATC	3 cut(s)	196, 899, 1178
EaeI	YGGCCR	1 cut(s)	1167
Eam1104I	CTCTTC	3 cut(s)	59, 164, 570
EarI	CTCTTC	3 cut(s)	59, 164, 570
Ecl136II	GAGCTC	1 cut(s)	69
Eco130I	CCWWGG	3 cut(s)	563, 645, 842
Eco24I	GRGCYC	1 cut(s)	71
Eco47I	GGWCC	3 cut(s)	422, 469, 815
Eco53kI	GAGCTC	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	83
Eco81I	CCTNAGG	1 cut(s)	1059
Eco88I	CYCGRG	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	69
EcoRII	CCWGG	3 cut(s)	162, 690, 765
EcoT14I	CCWWGG	3 cut(s)	563, 645, 842
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	3 cut(s)	563, 645, 842
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FauNDI	CATATG	1 cut(s)	1153
Fnu4HI	GCNGC	3 cut(s)	121, 909, 928
FokI	GGATG	5 cut(s)	98, 110, 404, 674, 819
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	3 cut(s)	121, 909, 928
FspBI	CTAG	2 cut(s)	293, 939
FspI	TGCGCA	1 cut(s)	102
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	3 cut(s)	121, 909, 928
GsaI	CCCAGC	1 cut(s)	876
GsuI	CTGGAG	1 cut(s)	1151
HaeIII	GGCC	1 cut(s)	1169
HapII	CCGG	3 cut(s)	127, 828, 1072
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	759
HpaI	GTTAAC	1 cut(s)	9
HpaII	CCGG	3 cut(s)	127, 828, 1072
HphI	GGTGA	3 cut(s)	190, 548, 997
Hpy166II	GTNNAC	4 cut(s)	9, 463, 604, 606
Hpy188I	TCNGA	6 cut(s)	73, 85, 674, 734, 834, 1183
Hpy188III	TCNNGA	5 cut(s)	202, 412, 632, 861, 1058
Hpy8I	GTNNAC	4 cut(s)	9, 463, 604, 606
HpyAV	CCTTC	4 cut(s)	259, 371, 435, 437
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	3 cut(s)	5, 26, 1111
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 109, 313, 341, 1202
HpyF3I	CTNAG	4 cut(s)	633, 944, 1059, 1217
HpySE526I	ACGT	3 cut(s)	5, 26, 1111
HspAI	GCGC	1 cut(s)	101
KspAI	GTTAAC	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	196, 899, 1178
LguI	GCTCTTC	2 cut(s)	59, 164
LmnI	GCTCC	2 cut(s)	74, 844
Lsp1109I	GCAGC	3 cut(s)	107, 895, 914
LweI	GCATC	3 cut(s)	132, 273, 382
MaeI	CTAG	2 cut(s)	293, 939
MaeII	ACGT	3 cut(s)	5, 26, 1111
MaeIII	GTNAC	3 cut(s)	301, 536, 953
MalI	GATC	3 cut(s)	198, 901, 1180
MboI	GATC	3 cut(s)	196, 899, 1178
MboII	GAAGA	7 cut(s)	12, 76, 151, 373, 499, 587, 690
MflI	RGATCY	1 cut(s)	899
MhlI	GDGCHC	3 cut(s)	71, 185, 841
MlsI	TGGCCA	1 cut(s)	1169
MluCI	AATT	4 cut(s)	914, 1048, 1104, 1225
MluNI	TGGCCA	1 cut(s)	1169
MlyI	GAGTC	4 cut(s)	86, 251, 533, 886
MmeI	TCCRAC	1 cut(s)	812
Mox20I	TGGCCA	1 cut(s)	1169
MscI	TGGCCA	1 cut(s)	1169
MseI	TTAA	5 cut(s)	8, 36, 42, 917, 998
MslI	CAYNNNNRTG	3 cut(s)	519, 1010, 1016
Msp20I	TGGCCA	1 cut(s)	1169
MspI	CCGG	3 cut(s)	127, 828, 1072
MspR9I	CCNGG	4 cut(s)	128, 164, 692, 767
Mva1269I	GAATGC	3 cut(s)	346, 370, 1129
MvaI	CCWGG	3 cut(s)	164, 692, 767
MwoI	GCNNNNNNNGC	5 cut(s)	66, 109, 313, 341, 1202
NciI	CCSGG	1 cut(s)	128
NcoI	CCATGG	1 cut(s)	563
NdeI	CATATG	1 cut(s)	1153
NdeII	GATC	3 cut(s)	196, 899, 1178
NlaIV	GGNNCC	2 cut(s)	270, 817
NmuCI	GTSAC	2 cut(s)	301, 536
NsbI	TGCGCA	1 cut(s)	102
NspI	RCATGY	1 cut(s)	712
PaqCI	CACCTGC	1 cut(s)	1016
PciSI	GCTCTTC	2 cut(s)	59, 164
PctI	GAATGC	3 cut(s)	346, 370, 1129
PfeI	GAWTC	8 cut(s)	171, 490, 628, 656, 729, 824, 1142, 1184
PfoI	TCCNGGA	1 cut(s)	162
PkrI	GCNGC	3 cut(s)	122, 910, 929
PleI	GAGTC	4 cut(s)	85, 251, 533, 885
PpsI	GAGTC	4 cut(s)	85, 251, 533, 885
PshBI	ATTAAT	1 cut(s)	36
Psp124BI	GAGCTC	1 cut(s)	71
Psp6I	CCWGG	3 cut(s)	162, 690, 765
PspFI	CCCAGC	1 cut(s)	872
PspGI	CCWGG	3 cut(s)	162, 690, 765
PspN4I	GGNNCC	2 cut(s)	270, 817
PspPI	GGNCC	3 cut(s)	422, 469, 815
PsuI	RGATCY	1 cut(s)	899
RsaI	GTAC	4 cut(s)	50, 434, 605, 638
RsaNI	GTAC	4 cut(s)	49, 433, 604, 637
RseI	CAYNNNNRTG	3 cut(s)	519, 1010, 1016
SacI	GAGCTC	1 cut(s)	71
SapI	GCTCTTC	2 cut(s)	59, 164
SaqAI	TTAA	5 cut(s)	8, 36, 42, 917, 998
SatI	GCNGC	3 cut(s)	121, 909, 928
Sau3AI	GATC	3 cut(s)	196, 899, 1178
Sau96I	GGNCC	3 cut(s)	422, 469, 815
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	4 cut(s)	86, 251, 533, 886
ScrFI	CCNGG	4 cut(s)	128, 164, 692, 767
SduI	GDGCHC	3 cut(s)	71, 185, 841
SfaNI	GCATC	3 cut(s)	132, 273, 382
SfcI	CTRYAG	1 cut(s)	889
SinI	GGWCC	3 cut(s)	422, 469, 815
SmiMI	CAYNNNNRTG	3 cut(s)	519, 1010, 1016
Sse9I	AATT	4 cut(s)	914, 1048, 1104, 1225
SspMI	CTAG	2 cut(s)	293, 939
SstI	GAGCTC	1 cut(s)	71
StyD4I	CCNGG	4 cut(s)	126, 162, 690, 765
StyI	CCWWGG	3 cut(s)	563, 645, 842
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	3 cut(s)	8, 29, 1114
TaqI	TCGA	1 cut(s)	411
TasI	AATT	4 cut(s)	914, 1048, 1104, 1225
TatI	WGTACW	3 cut(s)	48, 603, 636
TfiI	GAWTC	8 cut(s)	171, 490, 628, 656, 729, 824, 1142, 1184
Tru1I	TTAA	5 cut(s)	8, 36, 42, 917, 998
Tru9I	TTAA	5 cut(s)	8, 36, 42, 917, 998
TscAI	CASTG	5 cut(s)	196, 306, 443, 524, 1134
TseFI	GTSAC	2 cut(s)	301, 536
TseI	GCWGC	3 cut(s)	120, 908, 927
Tsp45I	GTSAC	2 cut(s)	301, 536
TspDTI	ATGAA	4 cut(s)	22, 353, 770, 1034
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	5 cut(s)	196, 306, 443, 524, 1134
VpaK11BI	GGWCC	3 cut(s)	422, 469, 815
VspI	ATTAAT	1 cut(s)	36
XceI	RCATGY	1 cut(s)	712
XcmI	CCANNNNNNNNNTGG	1 cut(s)	561
XspI	CTAG	2 cut(s)	293, 939
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.