Rh7AG231100

Beta-amylase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
22161164 .. 22163040
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG231100.1

Sequence Viewer

Length: 1323 bp
ATGAATGTGAGTTTGATGGCTTTGAAGAATGCAGGAGTAGAAGGAGTTATGGTGGATGCTTGGTGGGGATTGGTTGCGCAAGACGGACCTTCCAAGTACAACTGGGAAGGGTATGCTGAGCTTGTGAACTTGGTCCAAAAGCATGGCTTGAAGATTCAAGTTGTCATGTCTTTCCATCAGTGTGGAGGAAATGTTGGAGACTCATGCAGTATTCCACTGCCTCCATGGGTGCTTGAAGAGATAAGCAAGAACCCTGACCTTGTGTACACAGACAAATCTGGCAGAAGGAATCCTGAGTACATATCCTTGGGCTGTGATTCATTGCCTGTTCTCGGAGGAAGAACGCCCATCCAGGTTTACACCGACTACATGAAGAGCTTCCATGACAGATTCAGAGATTACTTGGGAGACGTTATTGTGGAAATTCAAGTCGGTATGGGTCCTTGTGGTGAACTCAGATATCCTGCTTATCCAGAGAGCAATGGAACATGGAAGTTTCCCGGAATTGGAGAATTTCAATGCTATGACAAGTACATGAAAGCTTCCCTGGAAGCATCAGTAGAGGCACAAGGAAAGAGAGATTGGGGAAGGACTGGACCCCATGATTCCGGCCAGTACAATCAGTTCCCTGAAGACACCGGATTTTTCAAAAGAGATGGAACCTGGAATACCGAGTATGGACAGTTCTTCCTCGAATGGTACTCAGAGAAGCTATTAAGGCACGGAGATAGACTCCTGGCAGCTGCAAAAGGAGTGTTCCAAGGAACTGGAGCTAAACTATCTGGAAAGGTAGCTGGGATTCATTGGCACTACAGAACAAGATCCCATGCTGCTGAATTAACTGCTGGCTACTATAATACTAGACTTAGAGATGGTTACATACCAACAGCAAAAATGTTCAGCAAACATGGGGTTGTATTAAACTTCACCTGCATGGAAATGAAAGATGGAGAACAGCCTGACAATGCAAATTGCTCTCCTGAGGGGTTAGTCCGGCAAGTAAAGATGGCAACCAAGAGTACTGGAATAGAACTTGCAGGAGAGAATGCACTGGAGAGGTATGATTCTGGTGCATATGGACAAGTTTCGGCCACAAGCAGATCAGATTCCTGCAATGCGTTGAGTGCTTTCACATACCTAAGATTGAATAAGAGATTGTTCGAAGGGGACAACTGGCGGAACATGGTTGAATTTGTGAAAGGCATGGCTGAAGGTGGCAGGAATGAAAGACTGTCAGAGTGCGACTCCACTGGCACTGACCTTTTTGTCCGTTTTATCAAAGAAAAGAATGTGCAGGAAGAAAAGGAAACTGTTCTAGTGTAG

Protein Analysis

440

Amino Acids

49.34

Weight (kDa)

5.93

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_14 PF01373 1 - 398 1.7e-201 Glycosyl hydrolase family 14
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 938
AasI GACNNNNNNGTC 1 cut(s) 1265
Acc16I TGCGCA 1 cut(s) 78
Acc36I ACCTGC 1 cut(s) 938
AciI CCGC 1 cut(s) 1177
AclWI GGATC 1 cut(s) 816
AcoI YGGCCR 2 cut(s) 610, 1089
AcsI RAATTY 3 cut(s) 423, 512, 1190
AcuI CTGAAG 2 cut(s) 651, 1230
AfaI GTAC 7 cut(s) 98, 266, 299, 533, 617, 701, 1021
AfiI CCNNNNNNNGG 2 cut(s) 332, 506
AgsI TTSAA 9 cut(s) 25, 151, 158, 236, 428, 518, 649, 1147, 1190
AjnI CCWGG 4 cut(s) 351, 546, 662, 735
AjuI GAANNNNNNNTTGG 2 cut(s) 565, 597
AluBI AGCT 7 cut(s) 121, 378, 542, 712, 743, 773, 794
AluI AGCT 7 cut(s) 121, 378, 542, 712, 743, 773, 794
Alw26I GTCTC 2 cut(s) 192, 402
AlwI GGATC 1 cut(s) 816
AoxI GGCC 2 cut(s) 610, 1089
ApeKI GCWGC 3 cut(s) 740, 743, 830
ApoI RAATTY 3 cut(s) 423, 512, 1190
Asp700I GAANNNNTTC 2 cut(s) 377, 1311
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 4 cut(s) 86, 133, 440, 596
AsuC2I CCSGG 1 cut(s) 501
AsuHPI GGTGA 2 cut(s) 461, 919
AsuII TTCGAA 1 cut(s) 1161
AvaII GGWCC 4 cut(s) 86, 133, 440, 596
AxyI CCTNAGG 1 cut(s) 981
BbsI GAAGAC 1 cut(s) 639
BbvI GCAGC 3 cut(s) 730, 752, 817
BccI CCATC 7 cut(s) 10, 183, 356, 650, 866, 941, 1000
BciT130I CCWGG 4 cut(s) 353, 548, 664, 737
BcnI CCSGG 1 cut(s) 501
BcoDI GTCTC 2 cut(s) 192, 402
BfaI CTAG 2 cut(s) 861, 1316
BfmI CTRYAG 1 cut(s) 811
BfuAI ACCTGC 1 cut(s) 938
BisI GCNGC 3 cut(s) 741, 744, 831
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 3 cut(s) 742, 745, 832
BmcAI AGTACT 1 cut(s) 1021
Bme1390I CCNGG 5 cut(s) 353, 501, 548, 664, 737
Bme18I GGWCC 4 cut(s) 86, 133, 440, 596
BmgT120I GGNCC 4 cut(s) 86, 133, 440, 596
BmiI GGNNCC 3 cut(s) 441, 598, 661
BmrFI CCNGG 5 cut(s) 353, 501, 548, 664, 737
BmrI ACTGGG 1 cut(s) 112
BmsI GCATC 2 cut(s) 46, 563
BmuI ACTGGG 1 cut(s) 112
BpiI GAAGAC 1 cut(s) 639
BplI GAGNNNNNCTC 4 cut(s) 717, 749, 1229, 1261
BpmI CTGGAG 2 cut(s) 789, 1073
Bpu1102I GCTNAGC 1 cut(s) 117
Bpu14I TTCGAA 1 cut(s) 1161
BpuMI CCSGG 1 cut(s) 501
BsaJI CCNNGG 4 cut(s) 224, 306, 546, 760
BsaWI WCCGGW 1 cut(s) 638
BsaXI ACNNNNNCTCC 4 cut(s) 36, 66, 177, 207
Bsc4I CCNNNNNNNGG 2 cut(s) 332, 506
Bse1I ACTGG 8 cut(s) 107, 598, 613, 772, 1027, 1056, 1178, 1255
Bse21I CCTNAGG 1 cut(s) 981
Bse3DI GCAATG 3 cut(s) 320, 487, 1120
BseBI CCWGG 4 cut(s) 353, 548, 664, 737
BseDI CCNNGG 4 cut(s) 224, 306, 546, 760
BseGI GGATG 2 cut(s) 61, 348
BseLI CCNNNNNNNGG 2 cut(s) 332, 506
BseMI GCAATG 3 cut(s) 320, 487, 1120
BseMII CTCAG 5 cut(s) 108, 285, 469, 717, 972
BseNI ACTGG 8 cut(s) 107, 598, 613, 772, 1027, 1056, 1178, 1255
BseXI GCAGC 3 cut(s) 730, 752, 817
BseYI CCCAGC 1 cut(s) 794
BsgI GTGCAG 1 cut(s) 1313
BshFI GGCC 2 cut(s) 612, 1091
BsiSI CCGG 4 cut(s) 501, 609, 639, 994
BslFI GGGAC 1 cut(s) 1181
BslI CCNNNNNNNGG 2 cut(s) 332, 506
BsmAI GTCTC 2 cut(s) 192, 402
BsmBI CGTCTC 1 cut(s) 402
BsmFI GGGAC 1 cut(s) 1181
BsmI GAATGC 2 cut(s) 34, 1051
BsnI GGCC 2 cut(s) 612, 1091
Bsp119I TTCGAA 1 cut(s) 1161
Bsp1407I TGTACA 1 cut(s) 264
Bsp143I GATC 2 cut(s) 821, 1100
Bsp1720I GCTNAGC 1 cut(s) 117
Bsp19I CCATGG 1 cut(s) 224
BspACI CCGC 1 cut(s) 1177
BspANI GGCC 2 cut(s) 612, 1091
BspCNI CTCAG 5 cut(s) 109, 286, 468, 716, 973
BspLI GGNNCC 3 cut(s) 441, 598, 661
BspMI ACCTGC 1 cut(s) 938
BspPI GGATC 1 cut(s) 816
BspQI GCTCTTC 1 cut(s) 368
BspT104I TTCGAA 1 cut(s) 1161
BsrDI GCAATG 3 cut(s) 320, 487, 1120
BsrGI TGTACA 1 cut(s) 264
BsrI ACTGG 8 cut(s) 107, 598, 613, 772, 1027, 1056, 1178, 1255
BssECI CCNNGG 4 cut(s) 224, 306, 546, 760
BssMI GATC 2 cut(s) 821, 1100
BssT1I CCWWGG 3 cut(s) 224, 306, 760
Bst2UI CCWGG 4 cut(s) 353, 548, 664, 737
Bst4CI ACNGT 3 cut(s) 684, 1233, 1312
Bst6I CTCTTC 2 cut(s) 231, 368
BstAUI TGTACA 1 cut(s) 264
BstBI TTCGAA 1 cut(s) 1161
BstC8I GCNNGC 1 cut(s) 847
BstDEI CTNAG 7 cut(s) 117, 294, 455, 703, 866, 981, 1139
BstDSI CCRYGG 1 cut(s) 224
BstF5I GGATG 2 cut(s) 61, 348
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 2 cut(s) 824, 1103
BstMAI GTCTC 2 cut(s) 192, 402
BstMBI GATC 2 cut(s) 821, 1100
BstMWI GCNNNNNNNGC 2 cut(s) 718, 1124
BstNI CCWGG 4 cut(s) 353, 548, 664, 737
BstSCI CCNGG 5 cut(s) 351, 499, 546, 662, 735
BstSFI CTRYAG 1 cut(s) 811
BstV1I GCAGC 3 cut(s) 730, 752, 817
BstV2I GAAGAC 1 cut(s) 639
BstX2I RGATCY 1 cut(s) 821
BstXI CCANNNNNNTGG 3 cut(s) 143, 182, 767
BstYI RGATCY 1 cut(s) 821
Bsu36I CCTNAGG 1 cut(s) 981
BsuRI GGCC 2 cut(s) 612, 1091
BtgI CCRYGG 1 cut(s) 224
BtsCI GGATG 2 cut(s) 61, 348
BtsI GCAGTG 1 cut(s) 215
BtsIMutI CAGTG 5 cut(s) 185, 215, 1049, 1248, 1254
BveI ACCTGC 1 cut(s) 938
Cac8I GCNNGC 1 cut(s) 847
CfoI GCGC 1 cut(s) 79
Cfr13I GGNCC 4 cut(s) 86, 133, 440, 596
Csp6I GTAC 7 cut(s) 97, 265, 298, 532, 616, 700, 1020
CviQI GTAC 7 cut(s) 97, 265, 298, 532, 616, 700, 1020
DdeI CTNAG 7 cut(s) 117, 294, 455, 703, 866, 981, 1139
DpnI GATC 2 cut(s) 823, 1102
DpnII GATC 2 cut(s) 821, 1100
DrdI GACNNNNNNGTC 1 cut(s) 1265
DseDI GACNNNNNNGTC 1 cut(s) 1265
EaeI YGGCCR 2 cut(s) 610, 1089
Eam1104I CTCTTC 2 cut(s) 231, 368
EarI CTCTTC 2 cut(s) 231, 368
EciI GGCGGA 1 cut(s) 1192
Eco130I CCWWGG 3 cut(s) 224, 306, 760
Eco32I GATATC 1 cut(s) 461
Eco47I GGWCC 4 cut(s) 86, 133, 440, 596
Eco57I CTGAAG 2 cut(s) 651, 1230
Eco81I CCTNAGG 1 cut(s) 981
EcoO109I RGGNCCY 1 cut(s) 440
EcoRII CCWGG 4 cut(s) 351, 546, 662, 735
EcoRV GATATC 1 cut(s) 461
EcoT14I CCWWGG 3 cut(s) 224, 306, 760
ErhI CCWWGG 3 cut(s) 224, 306, 760
Esp3I CGTCTC 1 cut(s) 402
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 1181
FauNDI CATATG 1 cut(s) 1075
Fnu4HI GCNGC 3 cut(s) 741, 744, 831
FokI GGATG 2 cut(s) 68, 335
Fsp4HI GCNGC 3 cut(s) 741, 744, 831
FspBI CTAG 2 cut(s) 861, 1316
FspI TGCGCA 1 cut(s) 78
GlaI GCGC 1 cut(s) 78
GluI GCNGC 3 cut(s) 741, 744, 831
GsaI CCCAGC 1 cut(s) 798
GsuI CTGGAG 2 cut(s) 789, 1073
HaeIII GGCC 2 cut(s) 612, 1091
HapII CCGG 4 cut(s) 501, 609, 639, 994
HhaI GCGC 1 cut(s) 79
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HindIII AAGCTT 1 cut(s) 540
HpaII CCGG 4 cut(s) 501, 609, 639, 994
HphI GGTGA 2 cut(s) 461, 919
Hpy166II GTNNAC 5 cut(s) 127, 265, 267, 358, 452
Hpy188I TCNGA 6 cut(s) 335, 395, 458, 706, 1105, 1237
Hpy188III TCNNGA 4 cut(s) 293, 473, 783, 980
Hpy8I GTNNAC 5 cut(s) 127, 265, 267, 358, 452
HpyAV CCTTC 7 cut(s) 35, 99, 101, 279, 582, 1157, 1205
HpyCH4III ACNGT 3 cut(s) 684, 1233, 1312
HpyCH4IV ACGT 1 cut(s) 411
HpyF10VI GCNNNNNNNGC 2 cut(s) 718, 1124
HpyF3I CTNAG 7 cut(s) 117, 294, 455, 703, 866, 981, 1139
HpySE526I ACGT 1 cut(s) 411
HspAI GCGC 1 cut(s) 77
Kzo9I GATC 2 cut(s) 821, 1100
LguI GCTCTTC 1 cut(s) 368
LmnI GCTCC 1 cut(s) 770
Lsp1109I GCAGC 3 cut(s) 730, 752, 817
LweI GCATC 2 cut(s) 46, 563
MaeI CTAG 2 cut(s) 861, 1316
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 1 cut(s) 875
MalI GATC 2 cut(s) 823, 1102
MboI GATC 2 cut(s) 821, 1100
MboII GAAGA 8 cut(s) 37, 163, 248, 351, 385, 644, 679, 1310
MflI RGATCY 1 cut(s) 821
MluCI AATT 6 cut(s) 423, 504, 512, 836, 970, 1190
MlyI GAGTC 3 cut(s) 194, 726, 1238
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 7 cut(s) 179, 231, 329, 556, 701, 976, 1050
MroXI GAANNNNTTC 2 cut(s) 377, 1311
MseI TTAA 3 cut(s) 716, 839, 920
MslI CAYNNNNRTG 3 cut(s) 180, 932, 938
MspA1I CMGCKG 1 cut(s) 743
MspI CCGG 4 cut(s) 501, 609, 639, 994
MspR9I CCNGG 5 cut(s) 353, 501, 548, 664, 737
Mva1269I GAATGC 2 cut(s) 34, 1051
MvaI CCWGG 4 cut(s) 353, 548, 664, 737
MwoI GCNNNNNNNGC 2 cut(s) 718, 1124
NciI CCSGG 1 cut(s) 501
NcoI CCATGG 1 cut(s) 224
NdeI CATATG 1 cut(s) 1075
NdeII GATC 2 cut(s) 821, 1100
NlaIV GGNNCC 3 cut(s) 441, 598, 661
NsbI TGCGCA 1 cut(s) 78
NspV TTCGAA 1 cut(s) 1161
PaqCI CACCTGC 1 cut(s) 938
PciSI GCTCTTC 1 cut(s) 368
PctI GAATGC 2 cut(s) 34, 1051
PdmI GAANNNNTTC 2 cut(s) 377, 1311
PfeI GAWTC 8 cut(s) 154, 289, 317, 390, 605, 799, 1064, 1106
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 3 cut(s) 742, 745, 832
PleI GAGTC 3 cut(s) 194, 726, 1238
PpsI GAGTC 3 cut(s) 194, 726, 1238
PpuMI RGGWCCY 1 cut(s) 440
Psp5II RGGWCCY 1 cut(s) 440
Psp6I CCWGG 4 cut(s) 351, 546, 662, 735
PspFI CCCAGC 1 cut(s) 794
PspGI CCWGG 4 cut(s) 351, 546, 662, 735
PspN4I GGNNCC 3 cut(s) 441, 598, 661
PspPI GGNCC 4 cut(s) 86, 133, 440, 596
PspPPI RGGWCCY 1 cut(s) 440
PsrI GAACNNNNNNTAC 6 cut(s) 608, 640, 652, 668, 684, 700
PsuI RGATCY 1 cut(s) 821
PvuII CAGCTG 1 cut(s) 743
RsaI GTAC 7 cut(s) 98, 266, 299, 533, 617, 701, 1021
RsaNI GTAC 7 cut(s) 97, 265, 298, 532, 616, 700, 1020
RseI CAYNNNNRTG 3 cut(s) 180, 932, 938
SapI GCTCTTC 1 cut(s) 368
SaqAI TTAA 3 cut(s) 716, 839, 920
SatI GCNGC 3 cut(s) 741, 744, 831
Sau3AI GATC 2 cut(s) 821, 1100
Sau96I GGNCC 4 cut(s) 86, 133, 440, 596
ScaI AGTACT 1 cut(s) 1021
SchI GAGTC 3 cut(s) 194, 726, 1238
ScrFI CCNGG 5 cut(s) 353, 501, 548, 664, 737
SfaNI GCATC 2 cut(s) 46, 563
SfcI CTRYAG 1 cut(s) 811
SfuI TTCGAA 1 cut(s) 1161
SinI GGWCC 4 cut(s) 86, 133, 440, 596
SmiMI CAYNNNNRTG 3 cut(s) 180, 932, 938
Sse9I AATT 6 cut(s) 423, 504, 512, 836, 970, 1190
SsiI CCGC 1 cut(s) 1177
SspMI CTAG 2 cut(s) 861, 1316
StyD4I CCNGG 5 cut(s) 351, 499, 546, 662, 735
StyI CCWWGG 3 cut(s) 224, 306, 760
TaaI ACNGT 3 cut(s) 684, 1233, 1312
TaiI ACGT 1 cut(s) 414
TaqI TCGA 2 cut(s) 693, 1161
TasI AATT 6 cut(s) 423, 504, 512, 836, 970, 1190
TatI WGTACW 6 cut(s) 96, 264, 297, 531, 615, 1019
TfiI GAWTC 8 cut(s) 154, 289, 317, 390, 605, 799, 1064, 1106
Tru1I TTAA 3 cut(s) 716, 839, 920
Tru9I TTAA 3 cut(s) 716, 839, 920
TscAI CASTG 5 cut(s) 185, 222, 1056, 1255, 1261
TseI GCWGC 3 cut(s) 740, 743, 830
TspDTI ATGAA 7 cut(s) 17, 309, 386, 551, 791, 956, 1239
TspGWI ACGGA 3 cut(s) 99, 738, 1259
TspRI CASTG 5 cut(s) 185, 222, 1056, 1255, 1261
VpaK11BI GGWCC 4 cut(s) 86, 133, 440, 596
XapI RAATTY 3 cut(s) 423, 512, 1190
XcmI CCANNNNNNNNNTGG 1 cut(s) 222
XmnI GAANNNNTTC 2 cut(s) 377, 1311
XspI CTAG 2 cut(s) 861, 1316
ZrmI AGTACT 1 cut(s) 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.