pycom06g03710

Beta-amylase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
4682684 .. 4684742
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g03710.2

Sequence Viewer

Length: 1398 bp
ATGACGTTAACTCTCCGTTCTTCAACTTCGTTAGTCAATCTTAAAGACCATAAGGGCTTTAAAACATCTGAAGACTCCCCCGGCACGATATGCTTTGCGCAAATCAAGCCATCATGCCGTCTCCGGGCAAAGAGTTCAATGCAAGAAACACGGCTCTTGCACGAGAACAACTTAATGACCATCTCTGATGGAAGGAGAGAGTTGCTTCATGCACTACCCAATATTGCTCACACCAGCACTGACAACAAGGTGCCTGTTTACGTGATGCTTCCGCTAGACACGGTTAGTCACAGAGGGCATTTGAATAAGCCGAGAGCAATGAATGCAAGTTTGGTGGCCCTGAAGCAAGCAGGGGTTGAAGGAGTTATGGTGGATGTATGGTGGGGATTGGCGGAGGAGGACGGACCTTCCAAGTACAACTGGGAAGGTTATGCCGAGATTGTGCAGATGGTGCAAAAGCATGGCATGAAGATCGAAGTCATCATGTCTTTTCATCAGTGCGGAGGAAATGTTGGAGACTCATGCAGCATTCCTTTACCTCCTTGGGTGCTTGAAGAAGTCAGCAAGAACCCTGACCTTGTTTACACAGACAAATCAGGCAGGGGGCATCCTGAGTACATATCCTTGCGATGTGATTCATTGCCTGTTCTCGGAGGAAGAACTCCATTCAGCATTCGACGAATGTCAACATCCGTCTCAAATTACAAGGGACTTGTTTCAAAGTTGGAAACTCAATTCCAATTACTTGTACAGGAAATTCAAGTAGGCAAGGGTCCTTGTGGGGAGCTCAGATATCCAGCTTATCCAGAAAGCAACGAACTTGGAGGTTTCCTGGAATCGGGGAATTCCAATGTTATGACAAGTTTTTATTTCATGCAGTACATGAGAGCTTCCTTGGAAGCATCAGCAGAGGCACTGGGGAAGAGAGATTGGGGAAGAAGTGGACCCCATGACTCCGGCCAGTACAATCAATTTCCTGAAGACACCGGATTTTTCAAAAGAGATGGAACATGGAACATTGAGTACCGACAATTCTTCCTGGAATGGTACTCCGGAAAGCTACTAAGACACGGAGATAGAATATTGTCAGCTGCGAAAGGAGTATTTCAAGGATCGAGCTGCTACTACTACACTAGACACAGAGATGGTTACGTACCGACAGCCAGGATGTTCAGCAAAAACATGGTTGTATTAAACTTCACCTGCATGGAAATGAAAGATAGAGTACAGCCTGAAAATGCAAATTGCTCACCAGAAGGTCTAGTGAGGCAGGTAAAGATGGCGACCAAGAGTGCTGGAATTGACCTAGCAGGAGAAAATGCCCTGGAGAGGTATGACACTCGTGCGTTTGCACAAGTTTTAGCAACAAGAATCGATCAGATTCTGGCAATGCACTAA

Protein Analysis

466

Amino Acids

52.23

Weight (kDa)

8.26

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1211
Acc16I TGCGCA 1 cut(s) 99
Acc36I ACCTGC 2 cut(s) 1211, 1261
AccB1I GGYRCC 1 cut(s) 250
AccIII TCCGGA 1 cut(s) 1052
AciI CCGC 3 cut(s) 272, 392, 501
AclWI GGATC 1 cut(s) 1120
AcoI YGGCCR 1 cut(s) 958
AcsI RAATTY 2 cut(s) 756, 844
AcuI CTGAAG 3 cut(s) 90, 362, 999
AfaI GTAC 9 cut(s) 416, 617, 750, 881, 965, 1025, 1049, 1155, 1227
AfiI CCNNNNNNNGG 4 cut(s) 124, 650, 838, 1329
AgsI TTSAA 9 cut(s) 24, 138, 304, 359, 554, 720, 761, 997, 1109
AjnI CCWGG 4 cut(s) 831, 1038, 1163, 1323
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 6 cut(s) 787, 800, 890, 1060, 1091, 1119
AluI AGCT 6 cut(s) 787, 800, 890, 1060, 1091, 1119
Alw21I GWGCWC 1 cut(s) 789
Alw26I GTCTC 3 cut(s) 125, 510, 700
AlwI GGATC 1 cut(s) 1120
AlwNI CAGNNNCTG 1 cut(s) 1384
Aor13HI TCCGGA 1 cut(s) 1052
AoxI GGCC 2 cut(s) 336, 958
ApeKI GCWGC 3 cut(s) 525, 1091, 1119
ApoI RAATTY 2 cut(s) 756, 844
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 4 cut(s) 337, 404, 773, 944
AsuC2I CCSGG 2 cut(s) 81, 125
AsuHPI GGTGA 2 cut(s) 1192, 1242
AvaII GGWCC 3 cut(s) 404, 773, 944
BanI GGYRCC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 789
BauI CACGAG 2 cut(s) 161, 1341
BbsI GAAGAC 2 cut(s) 78, 987
Bbv12I GWGCWC 1 cut(s) 789
BbvI GCAGC 3 cut(s) 537, 1078, 1106
BccI CCATC 7 cut(s) 118, 182, 188, 442, 998, 1139, 1273
BceAI ACGGC 2 cut(s) 102, 167
BcgI CGANNNNNNTGC 2 cut(s) 454, 488
BciT130I CCWGG 4 cut(s) 833, 1040, 1165, 1325
BcnI CCSGG 2 cut(s) 81, 125
BcoDI GTCTC 3 cut(s) 125, 510, 700
BfaI CTAG 4 cut(s) 275, 1134, 1262, 1307
BfuAI ACCTGC 2 cut(s) 1211, 1261
BisI GCNGC 3 cut(s) 526, 1092, 1120
BlsI GCNGC 3 cut(s) 527, 1093, 1121
Bme1390I CCNGG 6 cut(s) 81, 125, 833, 1040, 1165, 1325
Bme18I GGWCC 3 cut(s) 404, 773, 944
BmgT120I GGNCC 4 cut(s) 337, 404, 773, 944
BmiI GGNNCC 3 cut(s) 252, 774, 946
BmrFI CCNGG 6 cut(s) 81, 125, 833, 1040, 1165, 1325
BmrI ACTGGG 2 cut(s) 430, 926
BmsI GCATC 3 cut(s) 255, 616, 911
BmuI ACTGGG 2 cut(s) 430, 926
BoxI GACNNNNGTC 1 cut(s) 682
BpiI GAAGAC 2 cut(s) 78, 987
BpmI CTGGAG 1 cut(s) 1346
BpuMI CCSGG 2 cut(s) 81, 125
Bsa29I ATCGAT 1 cut(s) 1374
BsaAI YACGTR 2 cut(s) 262, 1153
BsaJI CCNNGG 4 cut(s) 79, 542, 894, 1323
BsaWI WCCGGW 2 cut(s) 986, 1052
BsaXI ACNNNNNCTCC 4 cut(s) 354, 384, 495, 525
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 650, 838, 1329
Bse1I ACTGG 3 cut(s) 425, 921, 961
Bse3DI GCAATG 3 cut(s) 324, 638, 1395
BseAI TCCGGA 1 cut(s) 1052
BseBI CCWGG 4 cut(s) 833, 1040, 1165, 1325
BseCI ATCGAT 1 cut(s) 1374
BseDI CCNNGG 4 cut(s) 79, 542, 894, 1323
BseGI GGATG 4 cut(s) 379, 607, 689, 1173
BseLI CCNNNNNNNGG 4 cut(s) 124, 650, 838, 1329
BseMI GCAATG 3 cut(s) 324, 638, 1395
BseMII CTCAG 2 cut(s) 603, 802
BseNI ACTGG 3 cut(s) 425, 921, 961
BseRI GAGGAG 1 cut(s) 410
BseXI GCAGC 3 cut(s) 537, 1078, 1106
BsgI GTGCAG 1 cut(s) 464
BshFI GGCC 2 cut(s) 338, 960
BshNI GGYRCC 1 cut(s) 250
BshVI ATCGAT 1 cut(s) 1374
BsiHKAI GWGCWC 1 cut(s) 789
BsiSI CCGG 5 cut(s) 81, 124, 957, 987, 1053
BslFI GGGAC 1 cut(s) 723
BslI CCNNNNNNNGG 4 cut(s) 124, 650, 838, 1329
BsmAI GTCTC 3 cut(s) 125, 510, 700
BsmBI CGTCTC 2 cut(s) 125, 700
BsmFI GGGAC 1 cut(s) 723
BsmI GAATGC 3 cut(s) 328, 528, 672
BsnI GGCC 2 cut(s) 338, 960
Bsp1286I GDGCHC 1 cut(s) 789
Bsp13I TCCGGA 1 cut(s) 1052
Bsp1407I TGTACA 1 cut(s) 748
Bsp143I GATC 3 cut(s) 471, 1112, 1375
BspACI CCGC 3 cut(s) 272, 392, 501
BspANI GGCC 2 cut(s) 338, 960
BspCNI CTCAG 2 cut(s) 604, 801
BspDI ATCGAT 1 cut(s) 1374
BspEI TCCGGA 1 cut(s) 1052
BspLI GGNNCC 3 cut(s) 252, 774, 946
BspMI ACCTGC 2 cut(s) 1211, 1261
BspPI GGATC 1 cut(s) 1120
BspT107I GGYRCC 1 cut(s) 250
BsrDI GCAATG 3 cut(s) 324, 638, 1395
BsrGI TGTACA 1 cut(s) 748
BsrI ACTGG 3 cut(s) 425, 921, 961
BssECI CCNNGG 4 cut(s) 79, 542, 894, 1323
BssMI GATC 3 cut(s) 471, 1112, 1375
BssSI CACGAG 2 cut(s) 161, 1341
BssT1I CCWWGG 2 cut(s) 542, 894
Bst2BI CACGAG 2 cut(s) 161, 1341
Bst2UI CCWGG 4 cut(s) 833, 1040, 1165, 1325
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 917
BstAPI GCANNNNNTGC 3 cut(s) 90, 323, 451
BstAUI TGTACA 1 cut(s) 748
BstBAI YACGTR 2 cut(s) 262, 1153
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 3 cut(s) 612, 788, 1064
BstF5I GGATG 4 cut(s) 379, 607, 689, 1173
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 3 cut(s) 474, 1115, 1378
BstMAI GTCTC 3 cut(s) 125, 510, 700
BstMBI GATC 3 cut(s) 471, 1112, 1375
BstMWI GCNNNNNNNGC 4 cut(s) 90, 106, 323, 451
BstNI CCWGG 4 cut(s) 833, 1040, 1165, 1325
BstPAI GACNNNNGTC 1 cut(s) 682
BstSCI CCNGG 6 cut(s) 79, 123, 831, 1038, 1163, 1323
BstSNI TACGTA 1 cut(s) 1153
BstV1I GCAGC 3 cut(s) 537, 1078, 1106
BstV2I GAAGAC 2 cut(s) 78, 987
Bsu15I ATCGAT 1 cut(s) 1374
BsuRI GGCC 2 cut(s) 338, 960
BsuTUI ATCGAT 1 cut(s) 1374
BtgZI GCGATG 1 cut(s) 643
BtsCI GGATG 4 cut(s) 379, 607, 689, 1173
BtsIMutI CAGTG 3 cut(s) 237, 503, 914
BveI ACCTGC 2 cut(s) 1211, 1261
Cac8I GCNNGC 1 cut(s) 348
CaiI CAGNNNCTG 1 cut(s) 1384
CfoI GCGC 1 cut(s) 100
Cfr13I GGNCC 4 cut(s) 337, 404, 773, 944
ClaI ATCGAT 1 cut(s) 1374
Csp6I GTAC 9 cut(s) 415, 616, 749, 880, 964, 1024, 1048, 1154, 1226
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviQI GTAC 9 cut(s) 415, 616, 749, 880, 964, 1024, 1048, 1154, 1226
DdeI CTNAG 3 cut(s) 612, 788, 1064
DpnI GATC 3 cut(s) 473, 1114, 1377
DpnII GATC 3 cut(s) 471, 1112, 1375
DraI TTTAAA 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 958
Eam1104I CTCTTC 1 cut(s) 917
EarI CTCTTC 1 cut(s) 917
EciI GGCGGA 1 cut(s) 407
Ecl136II GAGCTC 1 cut(s) 787
Eco105I TACGTA 1 cut(s) 1153
Eco130I CCWWGG 2 cut(s) 542, 894
Eco24I GRGCYC 1 cut(s) 789
Eco32I GATATC 1 cut(s) 794
Eco47I GGWCC 3 cut(s) 404, 773, 944
Eco53kI GAGCTC 1 cut(s) 787
Eco57I CTGAAG 3 cut(s) 90, 362, 999
EcoICRI GAGCTC 1 cut(s) 787
EcoO109I RGGNCCY 1 cut(s) 773
EcoRI GAATTC 1 cut(s) 844
EcoRII CCWGG 4 cut(s) 831, 1038, 1163, 1323
EcoRV GATATC 1 cut(s) 794
EcoT14I CCWWGG 2 cut(s) 542, 894
EcoT38I GRGCYC 1 cut(s) 789
ErhI CCWWGG 2 cut(s) 542, 894
Esp3I CGTCTC 2 cut(s) 125, 700
FaqI GGGAC 1 cut(s) 723
Fnu4HI GCNGC 3 cut(s) 526, 1092, 1120
FokI GGATG 4 cut(s) 386, 594, 676, 1180
FriOI GRGCYC 1 cut(s) 789
Fsp4HI GCNGC 3 cut(s) 526, 1092, 1120
FspBI CTAG 4 cut(s) 275, 1134, 1262, 1307
FspI TGCGCA 1 cut(s) 99
GlaI GCGC 1 cut(s) 99
GluI GCNGC 3 cut(s) 526, 1092, 1120
GsuI CTGGAG 1 cut(s) 1346
HaeIII GGCC 2 cut(s) 338, 960
HapII CCGG 5 cut(s) 81, 124, 957, 987, 1053
HhaI GCGC 1 cut(s) 100
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HincII GTYRAC 2 cut(s) 9, 687
HindII GTYRAC 2 cut(s) 9, 687
HinfI GANTC 7 cut(s) 74, 518, 635, 836, 953, 1371, 1381
HpaI GTTAAC 1 cut(s) 9
HpaII CCGG 5 cut(s) 81, 124, 957, 987, 1053
HphI GGTGA 2 cut(s) 1192, 1242
Hpy166II GTNNAC 5 cut(s) 9, 259, 583, 687, 944
Hpy188I TCNGA 5 cut(s) 70, 187, 653, 791, 1380
Hpy188III TCNNGA 4 cut(s) 611, 806, 977, 1053
Hpy8I GTNNAC 5 cut(s) 9, 259, 583, 687, 944
Hpy99I CGWCG 1 cut(s) 681
HpyAV CCTTC 5 cut(s) 186, 353, 417, 419, 1250
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4IV ACGT 3 cut(s) 5, 261, 1152
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 106, 323, 451
HpyF3I CTNAG 3 cut(s) 612, 788, 1064
HpySE526I ACGT 3 cut(s) 5, 261, 1152
HspAI GCGC 1 cut(s) 98
Kpn2I TCCGGA 1 cut(s) 1052
KspAI GTTAAC 1 cut(s) 9
Kzo9I GATC 3 cut(s) 471, 1112, 1375
LmnI GCTCC 1 cut(s) 784
Lsp1109I GCAGC 3 cut(s) 537, 1078, 1106
LweI GCATC 3 cut(s) 255, 616, 911
MaeI CTAG 4 cut(s) 275, 1134, 1262, 1307
MaeII ACGT 3 cut(s) 5, 261, 1152
MaeIII GTNAC 2 cut(s) 287, 1148
MalI GATC 3 cut(s) 473, 1114, 1377
MboI GATC 3 cut(s) 471, 1112, 1375
MboII GAAGA 9 cut(s) 12, 83, 481, 566, 669, 934, 948, 992, 1027
MhlI GDGCHC 1 cut(s) 789
MluCI AATT 9 cut(s) 700, 734, 740, 756, 844, 971, 1031, 1243, 1299
MlyI GAGTC 3 cut(s) 68, 512, 947
MmeI TCCRAC 2 cut(s) 493, 705
MroI TCCGGA 1 cut(s) 1052
MseI TTAA 5 cut(s) 8, 42, 60, 173, 1193
MslI CAYNNNNRTG 3 cut(s) 1143, 1205, 1211
MspA1I CMGCKG 1 cut(s) 1091
MspI CCGG 5 cut(s) 81, 124, 957, 987, 1053
MspR9I CCNGG 6 cut(s) 81, 125, 833, 1040, 1165, 1325
Mva1269I GAATGC 3 cut(s) 328, 528, 672
MvaI CCWGG 4 cut(s) 833, 1040, 1165, 1325
MwoI GCNNNNNNNGC 4 cut(s) 90, 106, 323, 451
NciI CCSGG 2 cut(s) 81, 125
NdeII GATC 3 cut(s) 471, 1112, 1375
NlaIV GGNNCC 3 cut(s) 252, 774, 946
NmeAIII GCCGAG 2 cut(s) 336, 460
NmuCI GTSAC 1 cut(s) 287
NsbI TGCGCA 1 cut(s) 99
PaqCI CACCTGC 1 cut(s) 1211
PctI GAATGC 3 cut(s) 328, 528, 672
PfeI GAWTC 4 cut(s) 635, 836, 1371, 1381
PfoI TCCNGGA 2 cut(s) 831, 1038
PkrI GCNGC 3 cut(s) 527, 1093, 1121
PleI GAGTC 3 cut(s) 68, 512, 947
PpsI GAGTC 3 cut(s) 68, 512, 947
Ppu21I YACGTR 2 cut(s) 262, 1153
PpuMI RGGWCCY 1 cut(s) 773
PshAI GACNNNNGTC 1 cut(s) 682
Psp124BI GAGCTC 1 cut(s) 789
Psp5II RGGWCCY 1 cut(s) 773
Psp6I CCWGG 4 cut(s) 831, 1038, 1163, 1323
PspGI CCWGG 4 cut(s) 831, 1038, 1163, 1323
PspN4I GGNNCC 3 cut(s) 252, 774, 946
PspPI GGNCC 4 cut(s) 337, 404, 773, 944
PspPPI RGGWCCY 1 cut(s) 773
PsrI GAACNNNNNNTAC 2 cut(s) 1007, 1039
PstNI CAGNNNCTG 1 cut(s) 1384
PvuII CAGCTG 1 cut(s) 1091
RsaI GTAC 9 cut(s) 416, 617, 750, 881, 965, 1025, 1049, 1155, 1227
RsaNI GTAC 9 cut(s) 415, 616, 749, 880, 964, 1024, 1048, 1154, 1226
RseI CAYNNNNRTG 3 cut(s) 1143, 1205, 1211
SacI GAGCTC 1 cut(s) 789
SaqAI TTAA 5 cut(s) 8, 42, 60, 173, 1193
SatI GCNGC 3 cut(s) 526, 1092, 1120
Sau3AI GATC 3 cut(s) 471, 1112, 1375
Sau96I GGNCC 4 cut(s) 337, 404, 773, 944
SchI GAGTC 3 cut(s) 68, 512, 947
ScrFI CCNGG 6 cut(s) 81, 125, 833, 1040, 1165, 1325
SduI GDGCHC 1 cut(s) 789
SfaNI GCATC 3 cut(s) 255, 616, 911
SinI GGWCC 3 cut(s) 404, 773, 944
SmiMI CAYNNNNRTG 3 cut(s) 1143, 1205, 1211
SnaBI TACGTA 1 cut(s) 1153
Sse9I AATT 9 cut(s) 700, 734, 740, 756, 844, 971, 1031, 1243, 1299
SsiI CCGC 3 cut(s) 272, 392, 501
SspI AATATT 2 cut(s) 223, 1083
SspMI CTAG 4 cut(s) 275, 1134, 1262, 1307
SstI GAGCTC 1 cut(s) 789
StyD4I CCNGG 6 cut(s) 79, 123, 831, 1038, 1163, 1323
StyI CCWWGG 2 cut(s) 542, 894
TaaI ACNGT 1 cut(s) 283
TaiI ACGT 3 cut(s) 8, 264, 1155
TaqI TCGA 4 cut(s) 474, 676, 1115, 1374
TasI AATT 9 cut(s) 700, 734, 740, 756, 844, 971, 1031, 1243, 1299
TatI WGTACW 6 cut(s) 414, 615, 748, 879, 963, 1225
TfiI GAWTC 4 cut(s) 635, 836, 1371, 1381
Tru1I TTAA 5 cut(s) 8, 42, 60, 173, 1193
Tru9I TTAA 5 cut(s) 8, 42, 60, 173, 1193
TscAI CASTG 3 cut(s) 244, 503, 921
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 3 cut(s) 525, 1091, 1119
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 7 cut(s) 197, 335, 482, 482, 627, 862, 1229
TspGWI ACGGA 4 cut(s) 5, 417, 682, 1086
TspRI CASTG 3 cut(s) 244, 503, 921
VpaK11BI GGWCC 3 cut(s) 404, 773, 944
XapI RAATTY 2 cut(s) 756, 844
XspI CTAG 4 cut(s) 275, 1134, 1262, 1307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.