Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004661

Physical Location & Seq

Genomic Coordinates Reverse (-)

24241421 .. 24241843

Gene Structure 423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18490

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTATTCTTTCCATCAGTGTGGAGGAAATGTTGGTGACTCATGCAGTATTCCACTACCTCCATGGTTGCTTGAAGAGATAAGCAAGAACCCTGACCTTGTGTACACAGACAAATCTGGTAGGAGGAATTCTGAGTACATATCCTTGGGGTGTGATTCATCGCCTGTTTTCGGAGGAAGAACGCCCATCCCGGTTTATACCGACTACATGCAGAGCTTCCAAGACAGATTCAGAGATTACTTGGGAGACGTTATTGTGGCAAGATACTTGCAACAAACATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

94

Amino Acids

10.67

Weight (kDa)

4.83

Isoelectric Point (pI)

60.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	2 - 90	3.6e-42	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17090
fragaria_vesca	FvH4_5g20800
malus_domestica	MD04G1056200.v1.1 MD06G1043900.v1.1 MD06G1044100.v1.1
prunus_persica	Prupe.5G051000_v2.0.a1
pyrus_communis	pycom04g04940 pycom06g03710 pycom06g03720
rosa_chinensis	RchiOBHm_Chr0c22g0500651 RchiOBHm_Chr7g0206601 RchiOBHm_Chr7g0207461 RchiOBHm_Chr7g0207721
rosa_laevigata	RLG00000003292
rosa_multiflora	Rmu_sc0007645.1_g000004 Rmu_sc0008509.1_g000004 Rmu_sc0008756.1_g000004
rosa_roxburghii	Rroxscaffold_3G00251200 Rroxscaffold_3G00251330
rosa_rugosa	Rorug06G0115800 Rorug07G0099200
rosa_samantha	Rh7AG231100 Rh7AG231400 Rh7AG232400 Rh7BG227800 Rh7CG246000 Rh7DG238300 Rh7DG238600
rosa_wichuraiana	Rw0G021940 Rw7G019620 Rw7G019900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	127
AfaI	GTAC	2 cut(s)	104, 137
AfiI	CCNNNNNNNGG	1 cut(s)	170
AflIII	ACRYGT	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	74
AluBI	AGCT	1 cut(s)	216
AluI	AGCT	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	240
ApoI	RAATTY	1 cut(s)	127
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	47
BccI	CCATC	2 cut(s)	21, 194
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	62, 144
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	62, 144
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	240
BsmBI	CGTCTC	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	102
Bsp19I	CCATGG	1 cut(s)	62
BspCNI	CTCAG	1 cut(s)	124
BsrGI	TGTACA	1 cut(s)	102
BssECI	CCNNGG	2 cut(s)	62, 144
BssT1I	CCWWGG	2 cut(s)	62, 144
Bst6I	CTCTTC	1 cut(s)	69
BstAUI	TGTACA	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	132
BstDSI	CCRYGG	1 cut(s)	62
BstF5I	GGATG	1 cut(s)	186
BstMAI	GTCTC	1 cut(s)	240
BstNSI	RCATGY	2 cut(s)	211, 282
BstSCI	CCNGG	1 cut(s)	189
BstXI	CCANNNNNNTGG	1 cut(s)	20
BtgI	CCRYGG	1 cut(s)	62
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	103, 136
CviAII	CATG	4 cut(s)	42, 63, 208, 279
CviJI	RGCY	1 cut(s)	216
CviKI_1	RGCY	1 cut(s)	216
CviQI	GTAC	2 cut(s)	103, 136
DdeI	CTNAG	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	62, 144
EcoRI	GAATTC	1 cut(s)	127
EcoT14I	CCWWGG	2 cut(s)	62, 144
ErhI	CCWWGG	2 cut(s)	62, 144
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	4 cut(s)	45, 66, 211, 282
FaiI	YATR	6 cut(s)	43, 64, 140, 198, 209, 280
FatI	CATG	4 cut(s)	41, 62, 207, 278
FokI	GGATG	1 cut(s)	173
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	4 cut(s)	45, 66, 211, 282
HinfI	GANTC	3 cut(s)	38, 155, 228
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	2 cut(s)	103, 105
Hpy188I	TCNGA	3 cut(s)	133, 173, 233
Hpy8I	GTNNAC	2 cut(s)	103, 105
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	3 cut(s)	45, 211, 271
HpyF3I	CTNAG	1 cut(s)	132
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	4 cut(s)	45, 66, 211, 282
LpnPI	CCDG	4 cut(s)	102, 105, 177, 204
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	35
MboII	GAAGA	2 cut(s)	86, 189
MluCI	AATT	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	4 cut(s)	17, 69, 117, 167
MseI	TTAA	1 cut(s)	283
MslI	CAYNNNNRTG	1 cut(s)	18
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	191
NciI	CCSGG	1 cut(s)	191
NcoI	CCATGG	1 cut(s)	62
NlaIII	CATG	4 cut(s)	45, 66, 211, 282
NmuCI	GTSAC	1 cut(s)	35
NspI	RCATGY	2 cut(s)	211, 282
PciI	ACATGT	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	155, 228
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PscI	ACATGT	1 cut(s)	278
RsaI	GTAC	2 cut(s)	104, 137
RsaNI	GTAC	2 cut(s)	103, 136
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	283
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	191
SetI	ASST	4 cut(s)	61, 99, 218, 252
SmiMI	CAYNNNNRTG	1 cut(s)	18
Sse9I	AATT	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	2 cut(s)	62, 144
TaiI	ACGT	1 cut(s)	252
TasI	AATT	1 cut(s)	127
TatI	WGTACW	2 cut(s)	102, 135
TfiI	GAWTC	2 cut(s)	155, 228
Tru1I	TTAA	1 cut(s)	283
Tru9I	TTAA	1 cut(s)	283
TscAI	CASTG	1 cut(s)	23
TseFI	GTSAC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	23
XapI	RAATTY	1 cut(s)	127
XceI	RCATGY	2 cut(s)	211, 282
XcmI	CCANNNNNNNNNTGG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.