Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002911

Physical Location & Seq

Genomic Coordinates Forward (+)

14647744 .. 14653148

Gene Structure 5405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G171400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGCAGTGTCAACGCAACTCCAATCTCTGACCAGTCTTGCTTCATTGACTAACCGCACTAAGCTCAAGTTTCTAAGCAGCAGCTGCATACCTTTAGCTCCCAACACAAAGCAAAGAAGCTCAGCTGCTCGAGTTTGTGCTCTGCTCTCTGCTTCGCCCATTGTTTCTGAGAGATCAAAGCCACCAATAGCTTCTTTCAAGGAGTTGATCGAGTCGTTGATTGATCGCGTGGATTTATCAGAGGCGGAGGCTGAAGATTCATTGGAATTTTTGCTGAGAGATGCTAATGAGGCTTTGATAAGTGCTTTCCTTGTATTATTGAGAGCCAAAGGAGAGACTTATGGAGAAATTGTAGGATTGGCAAAGGGGATGATGAAGCACAGCTTGAAGATAGATGGCATAGATGATGCAGTTGACATTGTTGGAACTGGTGGTGATGGCGCAAACACTGTAAACATTTCAACAGGGGCTGCAATACTTGCTGCAGCTTGTGGTGCAAAAGTTGCAAAGCAAGGAAGTCGTTCCAGTTCCTCTGCATGTGGAAGTGCTGATGTATTAGAAGCTTTGGGAATAATAATTGACTTGGACCCTGAGGGGGTAACTAGATGTGTGAATGAAGCAGGCATTGGATTTATGATGGCACCCAAGTATCATCCAGCAATGAATGTTGTCCGCCCTGTTAGAAAAAAGCTGAAAGTAAAGACGGTATTTAATATATTGGGACCCTTGTTGAATCCAGCAAGAGTACCTTTTGCTGTTGTTGGTGTATACAAGGATGAGCTCGTCTTGAAGATGGCTAAAGCATTGCAAAGCTTTGGAATGAAGAGAGCATTAGTTGTTCACTCAGAGGGATTGGACGAAATGAGTCCGCTTGGACCTGGGCATATCCTTGATGTGACTCCTAATAAAATTGAGGAGTTCTCCTTTGATCCATTGGATTTTGGAATTCCTCGCTGCACCCTAGATGACTTGCGAGGTGGAGGCCCTGAGTATAATGCTGAGGCACTAAAGCGTGTATTGTCAGGGGAGAAAGGTTCCATTGCAGATGCATTTATCTTAAATGCTGCAGCAGCTCTCTTTGTCAGCGGTCGGGTGAACACCTTGGCCGAAGGAGTTTCGTTGGCTCGTGAAACACAAATTTCAGGGAAGGCTATCAGAACCCTTGATCAATGGGTAGACATATCCAATACAATGAAGAAAGATACAATTGTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004048 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0031967 GO:0031975 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Glycos_trans_3N Glycos_transf_3

Protein Analysis

406

Amino Acids

42.94

Weight (kDa)

6.48

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17990
fragaria_vesca	FvH4_5g05490
malus_domestica	MD06G1172000.v1.1 MD14G1177900.v1.1
prunus_persica	Prupe.5G171400_v2.0.a1
pyrus_communis	pycom06g15320 pycom14g14840
rosa_chinensis	RchiOBHm_Chr6g0263061 RchiOBHm_Chr6g0263071 RchiOBHm_Chr6g0263081 RchiOBHm_Chr7g0193331
rosa_laevigata	RLG00000004279 RLG00000014377 RLG00000014379 RLG00000014380 RLG00000014381 RLG00000014382 RLG00000020372
rosa_multiflora	Rmu_sc0013034.1_g000001 Rmu_ssc0000092.1_g000010
rosa_roxburghii	Rroxscaffold_3G00262210 Rroxscaffold_7G00204720 Rroxscaffold_7G00204730 Rroxscaffold_7G00204770
rosa_rugosa	Rorug06G0003300 Rorug06G0003400 Rorug07G0008900
rosa_samantha	Rh6BG115300 Rh6BG116400 Rh6BG116500 Rh6CG114000 Rh6CG114800 Rh7AG134700 Rh7CG138800 Rh7DG136800
rosa_wichuraiana	Rw6G010480 Rw6G010510 Rw7G011510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	640
AccI	GTMKAC	2 cut(s)	768, 1176
AccII	CGCG	1 cut(s)	228
AciI	CCGC	5 cut(s)	55, 245, 673, 869, 1086
AclWI	GGATC	1 cut(s)	923
AcoI	YGGCCR	1 cut(s)	1104
AcsI	RAATTY	3 cut(s)	266, 945, 1137
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	1 cut(s)	747
AfiI	CCNNNNNNNGG	1 cut(s)	595
AgsI	TTSAA	5 cut(s)	199, 388, 462, 733, 790
AjnI	CCWGG	1 cut(s)	877
AjuI	GAANNNNNNNTTGG	2 cut(s)	609, 641
Alw21I	GWGCWC	2 cut(s)	142, 783
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	923
AlwNI	CAGNNNCTG	2 cut(s)	84, 470
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	2 cut(s)	982, 1104
ApoI	RAATTY	3 cut(s)	266, 945, 1137
Asp700I	GAANNNNTTC	1 cut(s)	520
AspLEI	GCGC	1 cut(s)	443
AspS9I	GGNCC	4 cut(s)	586, 722, 875, 983
AsuHPI	GGTGA	2 cut(s)	446, 1105
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	3 cut(s)	586, 722, 875
AxyI	CCTNAGG	1 cut(s)	591
BaeI	ACNNNNGTAYC	3 cut(s)	632, 665, 1194
BanI	GGYRCC	1 cut(s)	640
BanII	GRGCYC	1 cut(s)	783
BauI	CACGAG	1 cut(s)	1125
Bbv12I	GWGCWC	2 cut(s)	142, 783
BbvCI	CCTCAGC	1 cut(s)	999
BccI	CCATC	4 cut(s)	389, 431, 631, 787
BcgI	CGANNNNNNTGC	2 cut(s)	500, 534
BciT130I	CCWGG	1 cut(s)	879
BclI	TGATCA	1 cut(s)	1165
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	2 cut(s)	603, 962
BfmI	CTRYAG	2 cut(s)	483, 1065
BlpI	GCTNAGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	879
Bme18I	GGWCC	3 cut(s)	586, 722, 875
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	4 cut(s)	586, 722, 875, 983
BmiI	GGNNCC	5 cut(s)	588, 642, 723, 724, 1036
BmrFI	CCNGG	1 cut(s)	879
BmsI	GCATC	3 cut(s)	271, 397, 1036
BplI	GAGNNNNNCTC	2 cut(s)	905, 937
Bpu10I	CCTNAGC	1 cut(s)	999
Bpu1102I	GCTNAGC	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	878, 1101
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	595
Bse1I	ACTGG	3 cut(s)	33, 433, 525
Bse21I	CCTNAGG	1 cut(s)	591
Bse3DI	GCAATG	3 cut(s)	666, 803, 1038
BseBI	CCWGG	1 cut(s)	879
BseDI	CCNNGG	2 cut(s)	878, 1101
BseGI	GGATG	3 cut(s)	375, 652, 781
BseLI	CCNNNNNNNGG	1 cut(s)	595
BseMI	GCAATG	3 cut(s)	666, 803, 1038
BseMII	CTCAG	7 cut(s)	135, 159, 266, 582, 858, 978, 990
BseNI	ACTGG	3 cut(s)	33, 433, 525
BseRI	GAGGAG	1 cut(s)	929
BsgI	GTGCAG	1 cut(s)	940
Bsh1236I	CGCG	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	1090
BshFI	GGCC	2 cut(s)	984, 1106
BshNI	GGYRCC	1 cut(s)	640
BsiEI	CGRYCG	1 cut(s)	1090
BsiHKAI	GWGCWC	2 cut(s)	142, 783
BsiHKCI	CYCGRG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	735
BslI	CCNNNNNNNGG	1 cut(s)	595
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	735
BsnI	GGCC	2 cut(s)	984, 1106
BsoBI	CYCGRG	1 cut(s)	129
Bsp1286I	GDGCHC	2 cut(s)	142, 783
Bsp143I	GATC	5 cut(s)	173, 207, 223, 928, 1165
Bsp1720I	GCTNAGC	1 cut(s)	121
BspACI	CCGC	5 cut(s)	55, 245, 673, 869, 1086
BspANI	GGCC	2 cut(s)	984, 1106
BspCNI	CTCAG	7 cut(s)	134, 160, 267, 583, 857, 979, 991
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	5 cut(s)	588, 642, 723, 724, 1036
BspMAI	CTGCAG	2 cut(s)	487, 1069
BspPI	GGATC	1 cut(s)	923
BspT107I	GGYRCC	1 cut(s)	640
BsrDI	GCAATG	3 cut(s)	666, 803, 1038
BsrI	ACTGG	3 cut(s)	33, 433, 525
BssECI	CCNNGG	2 cut(s)	878, 1101
BssMI	GATC	5 cut(s)	173, 207, 223, 928, 1165
BssNAI	GTATAC	1 cut(s)	769
BssSI	CACGAG	1 cut(s)	1125
BssT1I	CCWWGG	1 cut(s)	1101
Bst1107I	GTATAC	1 cut(s)	769
Bst2BI	CACGAG	1 cut(s)	1125
Bst2UI	CCWGG	1 cut(s)	879
Bst4CI	ACNGT	2 cut(s)	451, 706
Bst6I	CTCTTC	1 cut(s)	818
BstAPI	GCANNNNNTGC	3 cut(s)	84, 479, 503
BstC8I	GCNNGC	1 cut(s)	622
BstDEI	CTNAG	9 cut(s)	60, 74, 121, 168, 275, 591, 844, 987, 999
BstF5I	GGATG	3 cut(s)	375, 652, 781
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	443
BstKTI	GATC	5 cut(s)	176, 210, 226, 931, 1168
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	5 cut(s)	173, 207, 223, 928, 1165
BstMCI	CGRYCG	1 cut(s)	1090
BstMWI	GCNNNNNNNGC	6 cut(s)	84, 290, 479, 494, 503, 1070
BstNI	CCWGG	1 cut(s)	879
BstNSI	RCATGY	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	877
BstSFI	CTRYAG	2 cut(s)	483, 1065
BstUI	CGCG	1 cut(s)	228
BstZ17I	GTATAC	1 cut(s)	769
Bsu36I	CCTNAGG	1 cut(s)	591
BsuRI	GGCC	2 cut(s)	984, 1106
BtsCI	GGATG	3 cut(s)	375, 652, 781
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 447
Cac8I	GCNNGC	1 cut(s)	622
CaiI	CAGNNNCTG	2 cut(s)	84, 470
CfoI	GCGC	1 cut(s)	443
Cfr13I	GGNCC	4 cut(s)	586, 722, 875, 983
Csp6I	GTAC	1 cut(s)	746
CviAII	CATG	1 cut(s)	537
CviQI	GTAC	1 cut(s)	746
DdeI	CTNAG	9 cut(s)	60, 74, 121, 168, 275, 591, 844, 987, 999
DpnI	GATC	5 cut(s)	175, 209, 225, 930, 1167
DpnII	GATC	5 cut(s)	173, 207, 223, 928, 1165
EaeI	YGGCCR	1 cut(s)	1104
Eam1104I	CTCTTC	1 cut(s)	818
EarI	CTCTTC	1 cut(s)	818
EciI	GGCGGA	2 cut(s)	260, 662
Ecl136II	GAGCTC	1 cut(s)	781
Eco130I	CCWWGG	1 cut(s)	1101
Eco24I	GRGCYC	1 cut(s)	783
Eco47I	GGWCC	3 cut(s)	586, 722, 875
Eco53kI	GAGCTC	1 cut(s)	781
Eco57I	CTGAAG	1 cut(s)	273
Eco81I	CCTNAGG	1 cut(s)	591
Eco88I	CYCGRG	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	781
EcoO109I	RGGNCCY	2 cut(s)	722, 983
EcoRI	GAATTC	1 cut(s)	945
EcoRII	CCWGG	1 cut(s)	877
EcoT14I	CCWWGG	1 cut(s)	1101
EcoT22I	ATGCAT	1 cut(s)	1051
EcoT38I	GRGCYC	1 cut(s)	783
ErhI	CCWWGG	1 cut(s)	1101
FaeI	CATG	1 cut(s)	540
FalI	AAGNNNNNCTT	4 cut(s)	368, 400, 733, 765
FaqI	GGGAC	1 cut(s)	735
FatI	CATG	1 cut(s)	536
FbaI	TGATCA	1 cut(s)	1165
FblI	GTMKAC	2 cut(s)	768, 1176
FokI	GGATG	3 cut(s)	382, 639, 788
FriOI	GRGCYC	1 cut(s)	783
FspBI	CTAG	2 cut(s)	603, 962
GlaI	GCGC	1 cut(s)	442
HaeIII	GGCC	2 cut(s)	984, 1106
HhaI	GCGC	1 cut(s)	443
Hin1II	CATG	1 cut(s)	540
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HincII	GTYRAC	2 cut(s)	12, 415
HindII	GTYRAC	2 cut(s)	12, 415
HindIII	AAGCTT	2 cut(s)	561, 811
HinfI	GANTC	5 cut(s)	212, 257, 733, 865, 898
HphI	GGTGA	2 cut(s)	446, 1105
Hpy166II	GTNNAC	7 cut(s)	12, 415, 454, 769, 841, 1096, 1177
Hpy188I	TCNGA	5 cut(s)	30, 169, 241, 847, 1157
Hpy188III	TCNNGA	2 cut(s)	787, 1127
Hpy8I	GTNNAC	7 cut(s)	12, 415, 454, 769, 841, 1096, 1177
HpyAV	CCTTC	2 cut(s)	1103, 1141
HpyCH4III	ACNGT	2 cut(s)	451, 706
HpyF10VI	GCNNNNNNNGC	6 cut(s)	84, 290, 479, 494, 503, 1070
HpyF3I	CTNAG	9 cut(s)	60, 74, 121, 168, 275, 591, 844, 987, 999
Hsp92II	CATG	1 cut(s)	540
HspAI	GCGC	1 cut(s)	441
KflI	GGGWCCC	1 cut(s)	722
Ksp22I	TGATCA	1 cut(s)	1165
Kzo9I	GATC	5 cut(s)	173, 207, 223, 928, 1165
LmnI	GCTCC	1 cut(s)	103
LweI	GCATC	3 cut(s)	271, 397, 1036
MaeI	CTAG	2 cut(s)	603, 962
MaeIII	GTNAC	2 cut(s)	598, 895
MalI	GATC	5 cut(s)	175, 209, 225, 930, 1167
MboI	GATC	5 cut(s)	173, 207, 223, 928, 1165
MboII	GAAGA	5 cut(s)	266, 400, 802, 835, 1207
MfeI	CAATTG	1 cut(s)	1206
MhlI	GDGCHC	2 cut(s)	142, 783
MluCI	AATT	7 cut(s)	266, 348, 576, 909, 945, 1137, 1206
MlyI	GAGTC	3 cut(s)	221, 874, 892
MmeI	TCCRAC	1 cut(s)	403
Mph1103I	ATGCAT	1 cut(s)	1051
MroXI	GAANNNNTTC	1 cut(s)	520
MseI	TTAA	3 cut(s)	711, 1058, 1216
MspA1I	CMGCKG	3 cut(s)	84, 125, 1086
MspR9I	CCNGG	1 cut(s)	879
MunI	CAATTG	1 cut(s)	1206
MvaI	CCWGG	1 cut(s)	879
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	6 cut(s)	84, 290, 479, 494, 503, 1070
NdeII	GATC	5 cut(s)	173, 207, 223, 928, 1165
NlaIII	CATG	1 cut(s)	540
NlaIV	GGNNCC	5 cut(s)	588, 642, 723, 724, 1036
NmuCI	GTSAC	1 cut(s)	895
NsiI	ATGCAT	1 cut(s)	1051
NspI	RCATGY	1 cut(s)	540
PaeR7I	CTCGAG	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	520
PfeI	GAWTC	2 cut(s)	257, 733
PleI	GAGTC	3 cut(s)	220, 873, 892
PpsI	GAGTC	3 cut(s)	220, 873, 892
PpuMI	RGGWCCY	1 cut(s)	722
Psp124BI	GAGCTC	1 cut(s)	783
Psp5II	RGGWCCY	1 cut(s)	722
Psp6I	CCWGG	1 cut(s)	877
PspGI	CCWGG	1 cut(s)	877
PspN4I	GGNNCC	5 cut(s)	588, 642, 723, 724, 1036
PspPI	GGNCC	4 cut(s)	586, 722, 875, 983
PspPPI	RGGWCCY	1 cut(s)	722
PspXI	VCTCGAGB	1 cut(s)	129
PstI	CTGCAG	2 cut(s)	487, 1069
PstNI	CAGNNNCTG	2 cut(s)	84, 470
PvuII	CAGCTG	2 cut(s)	84, 125
RsaI	GTAC	1 cut(s)	747
RsaNI	GTAC	1 cut(s)	746
SacI	GAGCTC	1 cut(s)	783
SaqAI	TTAA	3 cut(s)	711, 1058, 1216
Sau3AI	GATC	5 cut(s)	173, 207, 223, 928, 1165
Sau96I	GGNCC	4 cut(s)	586, 722, 875, 983
SchI	GAGTC	3 cut(s)	221, 874, 892
ScrFI	CCNGG	1 cut(s)	879
SduI	GDGCHC	2 cut(s)	142, 783
SfaNI	GCATC	3 cut(s)	271, 397, 1036
SfcI	CTRYAG	2 cut(s)	483, 1065
Sfr274I	CTCGAG	1 cut(s)	129
SinI	GGWCC	3 cut(s)	586, 722, 875
SlaI	CTCGAG	1 cut(s)	129
SmlI	CTYRAG	2 cut(s)	65, 129
SmoI	CTYRAG	2 cut(s)	65, 129
Sse9I	AATT	7 cut(s)	266, 348, 576, 909, 945, 1137, 1206
SsiI	CCGC	5 cut(s)	55, 245, 673, 869, 1086
SspMI	CTAG	2 cut(s)	603, 962
SstI	GAGCTC	1 cut(s)	783
StyD4I	CCNGG	1 cut(s)	877
StyI	CCWWGG	1 cut(s)	1101
TaaI	ACNGT	2 cut(s)	451, 706
TaqI	TCGA	2 cut(s)	130, 210
TasI	AATT	7 cut(s)	266, 348, 576, 909, 945, 1137, 1206
TfiI	GAWTC	2 cut(s)	257, 733
Tru1I	TTAA	3 cut(s)	711, 1058, 1216
Tru9I	TTAA	3 cut(s)	711, 1058, 1216
TscAI	CASTG	2 cut(s)	12, 454
TseFI	GTSAC	1 cut(s)	895
Tsp45I	GTSAC	1 cut(s)	895
TspDTI	ATGAA	7 cut(s)	33, 249, 389, 630, 677, 836, 1208
TspRI	CASTG	2 cut(s)	12, 454
VpaK11BI	GGWCC	3 cut(s)	586, 722, 875
XapI	RAATTY	3 cut(s)	266, 945, 1137
XceI	RCATGY	1 cut(s)	540
XhoI	CTCGAG	1 cut(s)	129
XmiI	GTMKAC	2 cut(s)	768, 1176
XmnI	GAANNNNTTC	1 cut(s)	520
XspI	CTAG	2 cut(s)	603, 962
Zsp2I	ATGCAT	1 cut(s)	1051

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.