Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002911

Physical Location & Seq

Genomic Coordinates Reverse (-)

56262693 .. 56266754

Gene Structure 4062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00262210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCAGTGTCAACGCAGCTTCACTCACTGACCAGTCTTGCTTCATTGACTCACCGCACTAAGGTCAAGTTTAACAGCGCCTGCTGCACAGCTCTGTTTCCCAATGCAAAGCAAACAAGCCCATCCACGCTTTGCAGTGCCGTGCGGAGTGCACAGTCCACTGTTTCTGAGAGATCAAACCCACCACTTACTTCCTTCAATGAGTTGATTGAGTCCTTGATTGATAAGGTGGATTTGTCGGAGTCCGAAGCCGAAGCTTCATTGGAGTTCTTGCTGAGTGACGCTAATGAGGCTTTGATTAGCGCCTTTCTTATGTTGTTGAGAGCCAAAGGAGAGACTTATGAAGAAATTGTGGGATTAGCAAAGGCAATGATAAGGCACAGTTTGAAGGTTGAGGGCTTGGATGACGCAGTTGACATTGTTGGAACTGGTGGTGACGGAGCAAACACAGTAAACATTTCAACCGGGGCTTCAATACTTGCTGCAGCTTGTGGTACAAAAGTTGCAAAGCAAGGTAATCGTTCAAGTTCCTCTGCATGTGGAAGGGTTGCGAGATGTGTTAATGAAGTAGGGATTGGTTTTATGATGGCACCAAAGTATCATCCAGCAATGAATGTCATTCGTCCTGTAAGGAAAAAGCTAAAAGTAAAGACTGTATTCAACATTTTGGGACCTATGTTGAATCCAGCTAGAGTTCCTTTTGCTGTTGTTGGTGTATACAAGGAAGAATTAGTCCTAAAGATGGCTAAAGCATTACAAAGCTTTGGCATGAAGAGAGCATTGGTTGTTCACTCGGAGGGCTTGGACGAAATGAGTCCCCTTGGACCGGGACATATCCTTAATGTGACTCCTAATAAGATTGAGAAGTTCTCCTTTGATCCATATGATTTGCGAGGTGGAGATCCAGAGTATAACGCTGAGGCATTAAAGCGCATATTATCAGGAGAGAAAGGTTCCATGGCAGATGCGTTTATCCTAAATGCAGCAGCAGCTCTTTTAGTCAGCGGCCGTGTAAATACTTTGGCTGAAGGAGTTTCTTTGGCTCGTGAGACACAACTTTCAGGAAAAGCTATCAAGACGCTTGATCAATGGACAATGAGAAAAGATACAGTTGTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004048 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0031967 GO:0031975 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Glycos_trans_3N Glycos_transf_3

Protein Analysis

373

Amino Acids

39.86

Weight (kDa)

8.78

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_trans_3N	PF02885	68 - 127	3e-16	Glycosyl transferase family, helical bundle domain
Glycos_transf_3	PF00591	135 - 181	1.1e-17	Glycosyl transferase family, a/b domain
Glycos_transf_3	PF00591	183 - 357	9.9e-52	Glycosyl transferase family, a/b domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17990
fragaria_vesca	FvH4_5g05490
malus_domestica	MD06G1172000.v1.1 MD14G1177900.v1.1
prunus_persica	Prupe.5G171400_v2.0.a1
pyrus_communis	pycom06g15320 pycom14g14840
rosa_chinensis	RchiOBHm_Chr6g0263061 RchiOBHm_Chr6g0263071 RchiOBHm_Chr6g0263081 RchiOBHm_Chr7g0193331
rosa_laevigata	RLG00000004279 RLG00000014377 RLG00000014379 RLG00000014380 RLG00000014381 RLG00000014382 RLG00000020372
rosa_multiflora	Rmu_sc0013034.1_g000001 Rmu_ssc0000092.1_g000010
rosa_roxburghii	Rroxscaffold_3G00262210 Rroxscaffold_7G00204720 Rroxscaffold_7G00204730 Rroxscaffold_7G00204770
rosa_rugosa	Rorug06G0003300 Rorug06G0003400 Rorug07G0008900
rosa_samantha	Rh6BG115300 Rh6BG116400 Rh6BG116500 Rh6CG114000 Rh6CG114800 Rh7AG134700 Rh7CG138800 Rh7DG136800
rosa_wichuraiana	Rw6G010480 Rw6G010510 Rw7G011510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	589
AccI	GTMKAC	1 cut(s)	717
AciI	CCGC	3 cut(s)	55, 145, 1005
AclWI	GGATC	2 cut(s)	872, 896
AcoI	YGGCCR	1 cut(s)	1006
AcuI	CTGAAG	1 cut(s)	1047
AfaI	GTAC	1 cut(s)	496
AfiI	CCNNNNNNNGG	3 cut(s)	61, 742, 826
AgsI	TTSAA	7 cut(s)	199, 388, 462, 474, 525, 661, 682
AjuI	GAANNNNNNNTTGG	4 cut(s)	558, 590, 764, 796
AluBI	AGCT	9 cut(s)	19, 92, 257, 488, 640, 689, 762, 992, 1070
AluI	AGCT	9 cut(s)	19, 92, 257, 488, 640, 689, 762, 992, 1070
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	2 cut(s)	329, 1043
Alw44I	GTGCAC	1 cut(s)	150
AlwI	GGATC	2 cut(s)	872, 896
AlwNI	CAGNNNCTG	1 cut(s)	81
AoxI	GGCC	1 cut(s)	1006
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	7 cut(s)	16, 84, 482, 485, 983, 986, 989
AspLEI	GCGC	3 cut(s)	80, 305, 933
AspS9I	GGNCC	2 cut(s)	671, 824
AsuC2I	CCSGG	2 cut(s)	466, 828
AsuHPI	GGTGA	2 cut(s)	44, 446
AvaII	GGWCC	2 cut(s)	671, 824
BaeGI	GKGCMC	1 cut(s)	154
BaeI	ACNNNNGTAYC	5 cut(s)	486, 519, 581, 614, 1098
BanI	GGYRCC	1 cut(s)	589
BauI	CACGAG	1 cut(s)	1044
Bbv12I	GWGCWC	1 cut(s)	154
BbvCI	CCTCAGC	1 cut(s)	918
BbvI	GCAGC	7 cut(s)	28, 71, 469, 497, 995, 998, 1001
BccI	CCATC	3 cut(s)	130, 580, 736
BceAI	ACGGC	2 cut(s)	125, 993
BcgI	CGANNNNNNTGC	2 cut(s)	500, 534
BclI	TGATCA	1 cut(s)	1084
BcnI	CCSGG	2 cut(s)	466, 828
BcoDI	GTCTC	2 cut(s)	329, 1043
BfaI	CTAG	1 cut(s)	690
BfmI	CTRYAG	1 cut(s)	483
BfoI	RGCGCY	2 cut(s)	81, 306
BisI	GCNGC	8 cut(s)	17, 85, 483, 486, 984, 987, 990, 1006
BlsI	GCNGC	8 cut(s)	18, 86, 484, 487, 985, 988, 991, 1007
Bme1390I	CCNGG	2 cut(s)	466, 828
Bme18I	GGWCC	2 cut(s)	671, 824
BmgT120I	GGNCC	2 cut(s)	671, 824
BmiI	GGNNCC	3 cut(s)	591, 672, 955
BmrFI	CCNGG	2 cut(s)	466, 828
BmsI	GCATC	1 cut(s)	955
BplI	GAGNNNNNCTC	2 cut(s)	854, 886
Bpu10I	CCTNAGC	1 cut(s)	918
BpuMI	CCSGG	2 cut(s)	466, 828
BsaJI	CCNNGG	3 cut(s)	465, 820, 957
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 742, 826
Bse1I	ACTGG	2 cut(s)	33, 433
Bse3DI	GCAATG	2 cut(s)	375, 615
BseDI	CCNNGG	3 cut(s)	465, 820, 957
BseGI	GGATG	3 cut(s)	122, 409, 601
BseLI	CCNNNNNNNGG	3 cut(s)	61, 742, 826
BseMI	GCAATG	2 cut(s)	375, 615
BseMII	CTCAG	3 cut(s)	159, 266, 909
BseNI	ACTGG	2 cut(s)	33, 433
BseSI	GKGCMC	1 cut(s)	154
BseX3I	CGGCCG	1 cut(s)	1006
BseXI	GCAGC	7 cut(s)	28, 71, 469, 497, 995, 998, 1001
BsgI	GTGCAG	1 cut(s)	70
Bsh1285I	CGRYCG	1 cut(s)	1009
BshFI	GGCC	1 cut(s)	1008
BshNI	GGYRCC	1 cut(s)	589
BsiEI	CGRYCG	1 cut(s)	1009
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	465, 827
BslFI	GGGAC	3 cut(s)	684, 801, 843
BslI	CCNNNNNNNGG	3 cut(s)	61, 742, 826
BsmAI	GTCTC	2 cut(s)	329, 1043
BsmFI	GGGAC	3 cut(s)	684, 801, 843
BsnI	GGCC	1 cut(s)	1008
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	4 cut(s)	173, 877, 901, 1084
Bsp19I	CCATGG	1 cut(s)	957
BspACI	CCGC	3 cut(s)	55, 145, 1005
BspANI	GGCC	1 cut(s)	1008
BspCNI	CTCAG	3 cut(s)	160, 267, 910
BspLI	GGNNCC	3 cut(s)	591, 672, 955
BspMAI	CTGCAG	1 cut(s)	487
BspPI	GGATC	2 cut(s)	872, 896
BspT107I	GGYRCC	1 cut(s)	589
BsrDI	GCAATG	2 cut(s)	375, 615
BsrI	ACTGG	2 cut(s)	33, 433
BssECI	CCNNGG	3 cut(s)	465, 820, 957
BssMI	GATC	4 cut(s)	173, 877, 901, 1084
BssNAI	GTATAC	1 cut(s)	718
BssSI	CACGAG	1 cut(s)	1044
BssT1I	CCWWGG	2 cut(s)	820, 957
Bst1107I	GTATAC	1 cut(s)	718
Bst2BI	CACGAG	1 cut(s)	1044
Bst4CI	ACNGT	6 cut(s)	156, 163, 383, 451, 655, 1111
Bst6I	CTCTTC	1 cut(s)	767
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	4 cut(s)	60, 168, 275, 918
BstDSI	CCRYGG	1 cut(s)	957
BstF5I	GGATG	3 cut(s)	122, 409, 601
BstH2I	RGCGCY	2 cut(s)	81, 306
BstHHI	GCGC	3 cut(s)	80, 305, 933
BstKTI	GATC	4 cut(s)	176, 880, 904, 1087
BstMAI	GTCTC	2 cut(s)	329, 1043
BstMBI	GATC	4 cut(s)	173, 877, 901, 1084
BstMCI	CGRYCG	1 cut(s)	1009
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 290, 989
BstNSI	RCATGY	1 cut(s)	540
BstSCI	CCNGG	2 cut(s)	464, 826
BstSFI	CTRYAG	1 cut(s)	483
BstSLI	GKGCMC	1 cut(s)	154
BstV1I	GCAGC	7 cut(s)	28, 71, 469, 497, 995, 998, 1001
BstX2I	RGATCY	1 cut(s)	901
BstYI	RGATCY	1 cut(s)	901
BstZ17I	GTATAC	1 cut(s)	718
BstZI	CGGCCG	1 cut(s)	1006
BsuRI	GGCC	1 cut(s)	1008
BtgI	CCRYGG	1 cut(s)	957
BtsCI	GGATG	3 cut(s)	122, 409, 601
BtsI	GCAGTG	2 cut(s)	12, 142
BtsIMutI	CAGTG	4 cut(s)	12, 26, 142, 159
Cac8I	GCNNGC	1 cut(s)	82
CaiI	CAGNNNCTG	1 cut(s)	81
CfoI	GCGC	3 cut(s)	80, 305, 933
Cfr13I	GGNCC	2 cut(s)	671, 824
CseI	GACGC	3 cut(s)	290, 416, 1087
Csp6I	GTAC	1 cut(s)	495
CviAII	CATG	3 cut(s)	537, 769, 958
CviQI	GTAC	1 cut(s)	495
DdeI	CTNAG	4 cut(s)	60, 168, 275, 918
DpnI	GATC	4 cut(s)	175, 879, 903, 1086
DpnII	GATC	4 cut(s)	173, 877, 901, 1084
EaeI	YGGCCR	1 cut(s)	1006
EagI	CGGCCG	1 cut(s)	1006
Eam1104I	CTCTTC	1 cut(s)	767
EarI	CTCTTC	1 cut(s)	767
EclXI	CGGCCG	1 cut(s)	1006
Eco130I	CCWWGG	2 cut(s)	820, 957
Eco47I	GGWCC	2 cut(s)	671, 824
Eco52I	CGGCCG	1 cut(s)	1006
Eco57I	CTGAAG	1 cut(s)	1047
EcoO109I	RGGNCCY	1 cut(s)	671
EcoT14I	CCWWGG	2 cut(s)	820, 957
ErhI	CCWWGG	2 cut(s)	820, 957
FaeI	CATG	3 cut(s)	540, 772, 961
FalI	AAGNNNNNCTT	2 cut(s)	857, 889
FaqI	GGGAC	3 cut(s)	684, 801, 843
FatI	CATG	3 cut(s)	536, 768, 957
FauNDI	CATATG	1 cut(s)	883
FbaI	TGATCA	1 cut(s)	1084
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	8 cut(s)	17, 85, 483, 486, 984, 987, 990, 1006
FokI	GGATG	3 cut(s)	109, 416, 588
Fsp4HI	GCNGC	8 cut(s)	17, 85, 483, 486, 984, 987, 990, 1006
FspBI	CTAG	1 cut(s)	690
GlaI	GCGC	3 cut(s)	79, 304, 932
GluI	GCNGC	8 cut(s)	17, 85, 483, 486, 984, 987, 990, 1006
HaeII	RGCGCY	2 cut(s)	81, 306
HaeIII	GGCC	1 cut(s)	1008
HapII	CCGG	2 cut(s)	465, 827
HgaI	GACGC	3 cut(s)	290, 416, 1087
HhaI	GCGC	3 cut(s)	80, 305, 933
Hin1II	CATG	3 cut(s)	540, 772, 961
Hin6I	GCGC	3 cut(s)	78, 303, 931
HinP1I	GCGC	3 cut(s)	78, 303, 931
HincII	GTYRAC	2 cut(s)	12, 415
HindII	GTYRAC	2 cut(s)	12, 415
HindIII	AAGCTT	2 cut(s)	255, 760
HinfI	GANTC	6 cut(s)	49, 212, 242, 682, 814, 847
HpaII	CCGG	2 cut(s)	465, 827
HphI	GGTGA	2 cut(s)	44, 446
Hpy166II	GTNNAC	7 cut(s)	12, 152, 159, 415, 454, 718, 790
Hpy188I	TCNGA	4 cut(s)	169, 241, 247, 796
Hpy188III	TCNNGA	5 cut(s)	905, 942, 1046, 1062, 1075
Hpy8I	GTNNAC	7 cut(s)	12, 152, 159, 415, 454, 718, 790
HpyAV	CCTTC	4 cut(s)	205, 382, 537, 1022
HpyCH4III	ACNGT	6 cut(s)	156, 163, 383, 451, 655, 1111
HpyCH4V	TGCA	8 cut(s)	87, 107, 135, 152, 485, 506, 536, 983
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 290, 989
HpyF3I	CTNAG	4 cut(s)	60, 168, 275, 918
Hsp92II	CATG	3 cut(s)	540, 772, 961
HspAI	GCGC	3 cut(s)	78, 303, 931
Ksp22I	TGATCA	1 cut(s)	1084
Kzo9I	GATC	4 cut(s)	173, 877, 901, 1084
LmnI	GCTCC	1 cut(s)	440
Lsp1109I	GCAGC	7 cut(s)	28, 71, 469, 497, 995, 998, 1001
LweI	GCATC	1 cut(s)	955
MaeI	CTAG	1 cut(s)	690
MaeIII	GTNAC	3 cut(s)	278, 434, 844
MalI	GATC	4 cut(s)	175, 879, 903, 1086
MboI	GATC	4 cut(s)	173, 877, 901, 1084
MboII	GAAGA	3 cut(s)	356, 737, 784
MflI	RGATCY	1 cut(s)	901
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	2 cut(s)	348, 728
MlyI	GAGTC	5 cut(s)	43, 221, 251, 823, 841
MmeI	TCCRAC	2 cut(s)	219, 403
MnlI	CCTC	6 cut(s)	283, 388, 541, 790, 887, 913
MseI	TTAA	5 cut(s)	72, 561, 840, 926, 1120
MspA1I	CMGCKG	1 cut(s)	1005
MspI	CCGG	2 cut(s)	465, 827
MspR9I	CCNGG	2 cut(s)	466, 828
MwoI	GCNNNNNNNGC	3 cut(s)	84, 290, 989
NciI	CCSGG	2 cut(s)	466, 828
NcoI	CCATGG	1 cut(s)	957
NdeI	CATATG	1 cut(s)	883
NdeII	GATC	4 cut(s)	173, 877, 901, 1084
NlaIII	CATG	3 cut(s)	540, 772, 961
NlaIV	GGNNCC	3 cut(s)	591, 672, 955
NmuCI	GTSAC	3 cut(s)	278, 434, 844
NspI	RCATGY	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	682
PkrI	GCNGC	8 cut(s)	18, 86, 484, 487, 985, 988, 991, 1007
PleI	GAGTC	5 cut(s)	43, 220, 250, 822, 841
PpsI	GAGTC	5 cut(s)	43, 220, 250, 822, 841
PpuMI	RGGWCCY	1 cut(s)	671
Psp5II	RGGWCCY	1 cut(s)	671
PspN4I	GGNNCC	3 cut(s)	591, 672, 955
PspPI	GGNCC	2 cut(s)	671, 824
PspPPI	RGGWCCY	1 cut(s)	671
PstI	CTGCAG	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	901
RsaI	GTAC	1 cut(s)	496
RsaNI	GTAC	1 cut(s)	495
SaqAI	TTAA	5 cut(s)	72, 561, 840, 926, 1120
SatI	GCNGC	8 cut(s)	17, 85, 483, 486, 984, 987, 990, 1006
Sau3AI	GATC	4 cut(s)	173, 877, 901, 1084
Sau96I	GGNCC	2 cut(s)	671, 824
SchI	GAGTC	5 cut(s)	43, 221, 251, 823, 841
ScrFI	CCNGG	2 cut(s)	466, 828
SduI	GDGCHC	1 cut(s)	154
SfaNI	GCATC	1 cut(s)	955
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	2 cut(s)	671, 824
Sse9I	AATT	2 cut(s)	348, 728
SsiI	CCGC	3 cut(s)	55, 145, 1005
SspMI	CTAG	1 cut(s)	690
StyD4I	CCNGG	2 cut(s)	464, 826
StyI	CCWWGG	2 cut(s)	820, 957
TaaI	ACNGT	6 cut(s)	156, 163, 383, 451, 655, 1111
TasI	AATT	2 cut(s)	348, 728
TauI	GCSGC	1 cut(s)	1008
TfiI	GAWTC	1 cut(s)	682
Tru1I	TTAA	5 cut(s)	72, 561, 840, 926, 1120
Tru9I	TTAA	5 cut(s)	72, 561, 840, 926, 1120
TscAI	CASTG	4 cut(s)	12, 33, 142, 166
TseFI	GTSAC	3 cut(s)	278, 434, 844
TseI	GCWGC	7 cut(s)	16, 84, 482, 485, 983, 986, 989
Tsp45I	GTSAC	3 cut(s)	278, 434, 844
TspDTI	ATGAA	6 cut(s)	33, 249, 357, 579, 626, 785
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	4 cut(s)	12, 33, 142, 166
VneI	GTGCAC	1 cut(s)	150
VpaK11BI	GGWCC	2 cut(s)	671, 824
XceI	RCATGY	1 cut(s)	540
XmiI	GTMKAC	1 cut(s)	717
XspI	CTAG	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.