Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002911

Physical Location & Seq

Genomic Coordinates Reverse (-)

18106958 .. 18110434

Gene Structure 3477 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G010510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCAGTGTCAACGCAGCTTCACTCACTTACCACTCTTGCTTCATTGATTCACCGCACTAAGGTCAAGTTTAACAGCGCCTGCTGCGCAGCTCTGTTTCCCAATGCAAAGCAAACAAGCCCATCCACGCTTTGCAGTGCTGTGCAGAGTGCAGAGTCCACTGTTTCTGAGAGATCAAACCCACCATTTACTTCCTTCAATGAGTTGATTGAGTCCTTGATTGATAAGGTGGATTTGTCGGAGTCCGAAGCCAAAGCTTCATTGGAGTTCTTGCTGAGTGATGCTGATGAGGCTTTGATTAGCGCCTTTCTTGTGTTGTTGAGAGCCAAAGGAGAGACTTATGAAGAAATTGTGGGATTAGCAAAGGCAATGATAAAGCACAGTTTGAAGATTGAGGGCTTGGATGACGCAGTTGACATTGTTGGAACTGGTGGTGACGGAGCAAACACAGTAAACATTTCAACCGGGGCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTTGCAAAGGGGGTCGCGAGATGTGTTAATGAAGTAGGGTTTGGTTTTATGATGGCACCAAAGTATCATCCAGCAATGAATGTCGTTCGTCCTGTAAGGAAAAAGCTAAAAGTAAAGACTGTATTCAACATTTTGGGACCTATGTTGAATCCAGCTAGAGTTCCTTTTGCTGTTGTTGGTGTATACAAGGAAGAATTAGTCCTAAAGATGGCTAAAGCATTACAAAGCTTTGGCATGAAGAGAGCATTGGTTGTTCACTCGAAGGGCTTGGACGAAATGAGTCCCCTTGGACCTGGACATATCCTTAATGTGACTCCTAATAAGATTGAGAAGTTCTCCTTTGATCCATTGGACTTTGGAATTCCTCGATGCACTATAGATGATTTGCGAGGTGGAGATCCAGAGTATAACGCTGAGGCATTAAAGCGCGTATTATCAGGAGAGAAAGGTTCCATGGCAGATGCGTTTCAGCAGCTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004048 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0031967 GO:0031975 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Glycos_trans_3N Glycos_transf_3

Protein Analysis

327

Amino Acids

34.99

Weight (kDa)

7.61

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_trans_3N	PF02885	68 - 127	1.4e-15	Glycosyl transferase family, helical bundle domain
Glycos_transf_3	PF00591	135 - 170	5.3e-12	Glycosyl transferase family, a/b domain
Glycos_transf_3	PF00591	172 - 320	5.5e-51	Glycosyl transferase family, a/b domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17990
fragaria_vesca	FvH4_5g05490
malus_domestica	MD06G1172000.v1.1 MD14G1177900.v1.1
prunus_persica	Prupe.5G171400_v2.0.a1
pyrus_communis	pycom06g15320 pycom14g14840
rosa_chinensis	RchiOBHm_Chr6g0263061 RchiOBHm_Chr6g0263071 RchiOBHm_Chr6g0263081 RchiOBHm_Chr7g0193331
rosa_laevigata	RLG00000004279 RLG00000014377 RLG00000014379 RLG00000014380 RLG00000014381 RLG00000014382 RLG00000020372
rosa_multiflora	Rmu_sc0013034.1_g000001 Rmu_ssc0000092.1_g000010
rosa_roxburghii	Rroxscaffold_3G00262210 Rroxscaffold_7G00204720 Rroxscaffold_7G00204730 Rroxscaffold_7G00204770
rosa_rugosa	Rorug06G0003300 Rorug06G0003400 Rorug07G0008900
rosa_samantha	Rh6BG115300 Rh6BG116400 Rh6BG116500 Rh6CG114000 Rh6CG114800 Rh7AG134700 Rh7CG138800 Rh7DG136800
rosa_wichuraiana	Rw6G010480 Rw6G010510 Rw7G011510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	88
AccB1I	GGYRCC	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	684
AccII	CGCG	2 cut(s)	518, 930
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	2 cut(s)	839, 893
AcsI	RAATTY	1 cut(s)	861
AfiI	CCNNNNNNNGG	2 cut(s)	61, 709
AgsI	TTSAA	6 cut(s)	199, 388, 462, 474, 628, 649
AjnI	CCWGG	1 cut(s)	793
AjuI	GAANNNNNNNTTGG	4 cut(s)	525, 557, 731, 763
AluBI	AGCT	8 cut(s)	19, 92, 257, 488, 607, 656, 729, 976
AluI	AGCT	8 cut(s)	19, 92, 257, 488, 607, 656, 729, 976
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	2 cut(s)	839, 893
AlwNI	CAGNNNCTG	1 cut(s)	81
ApeKI	GCWGC	6 cut(s)	16, 84, 89, 482, 485, 973
ApoI	RAATTY	1 cut(s)	861
AspLEI	GCGC	4 cut(s)	80, 89, 305, 930
AspS9I	GGNCC	2 cut(s)	638, 791
AsuC2I	CCSGG	1 cut(s)	466
AsuHPI	GGTGA	2 cut(s)	44, 446
AvaII	GGWCC	2 cut(s)	638, 791
BaeI	ACNNNNGTAYC	2 cut(s)	548, 581
BanI	GGYRCC	1 cut(s)	556
BbvCI	CCTCAGC	1 cut(s)	915
BbvI	GCAGC	5 cut(s)	28, 71, 101, 469, 497
BccI	CCATC	3 cut(s)	130, 547, 703
BciT130I	CCWGG	1 cut(s)	795
BcnI	CCSGG	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	1 cut(s)	657
BfmI	CTRYAG	2 cut(s)	483, 876
BfoI	RGCGCY	2 cut(s)	81, 306
BisI	GCNGC	6 cut(s)	17, 85, 90, 483, 486, 974
BlsI	GCNGC	6 cut(s)	18, 86, 91, 484, 487, 975
Bme1390I	CCNGG	2 cut(s)	466, 795
Bme18I	GGWCC	2 cut(s)	638, 791
BmgT120I	GGNCC	2 cut(s)	638, 791
BmiI	GGNNCC	3 cut(s)	558, 639, 952
BmrFI	CCNGG	2 cut(s)	466, 795
BmsI	GCATC	3 cut(s)	271, 860, 952
BplI	GAGNNNNNCTC	2 cut(s)	821, 853
Bpu10I	CCTNAGC	1 cut(s)	915
BpuMI	CCSGG	1 cut(s)	466
BsaJI	CCNNGG	3 cut(s)	465, 787, 954
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 709
Bse1I	ACTGG	1 cut(s)	433
Bse3DI	GCAATG	2 cut(s)	375, 582
BseBI	CCWGG	1 cut(s)	795
BseDI	CCNNGG	3 cut(s)	465, 787, 954
BseGI	GGATG	3 cut(s)	122, 409, 568
BseLI	CCNNNNNNNGG	2 cut(s)	61, 709
BseMI	GCAATG	2 cut(s)	375, 582
BseMII	CTCAG	3 cut(s)	159, 266, 906
BseNI	ACTGG	1 cut(s)	433
BseXI	GCAGC	5 cut(s)	28, 71, 101, 469, 497
BsgI	GTGCAG	2 cut(s)	164, 171
Bsh1236I	CGCG	2 cut(s)	518, 930
BshNI	GGYRCC	1 cut(s)	556
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	2 cut(s)	651, 768
BslI	CCNNNNNNNGG	2 cut(s)	61, 709
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	2 cut(s)	651, 768
Bsp143I	GATC	3 cut(s)	173, 844, 898
Bsp19I	CCATGG	1 cut(s)	954
Bsp68I	TCGCGA	1 cut(s)	518
BspACI	CCGC	1 cut(s)	55
BspCNI	CTCAG	3 cut(s)	160, 267, 907
BspFNI	CGCG	2 cut(s)	518, 930
BspLI	GGNNCC	3 cut(s)	558, 639, 952
BspMAI	CTGCAG	1 cut(s)	487
BspPI	GGATC	2 cut(s)	839, 893
BspT107I	GGYRCC	1 cut(s)	556
BsrDI	GCAATG	2 cut(s)	375, 582
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	3 cut(s)	465, 787, 954
BssMI	GATC	3 cut(s)	173, 844, 898
BssNAI	GTATAC	1 cut(s)	685
BssT1I	CCWWGG	2 cut(s)	787, 954
Bst1107I	GTATAC	1 cut(s)	685
Bst2UI	CCWGG	1 cut(s)	795
Bst4CI	ACNGT	4 cut(s)	163, 383, 451, 622
Bst6I	CTCTTC	1 cut(s)	734
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	4 cut(s)	60, 168, 275, 915
BstDSI	CCRYGG	1 cut(s)	954
BstF5I	GGATG	3 cut(s)	122, 409, 568
BstFNI	CGCG	2 cut(s)	518, 930
BstH2I	RGCGCY	2 cut(s)	81, 306
BstHHI	GCGC	4 cut(s)	80, 89, 305, 930
BstKTI	GATC	3 cut(s)	176, 847, 901
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	3 cut(s)	173, 844, 898
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 86, 290, 494, 503
BstNI	CCWGG	1 cut(s)	795
BstSCI	CCNGG	2 cut(s)	464, 793
BstSFI	CTRYAG	2 cut(s)	483, 876
BstUI	CGCG	2 cut(s)	518, 930
BstV1I	GCAGC	5 cut(s)	28, 71, 101, 469, 497
BstX2I	RGATCY	1 cut(s)	898
BstYI	RGATCY	1 cut(s)	898
BstZ17I	GTATAC	1 cut(s)	685
BtgI	CCRYGG	1 cut(s)	954
BtsCI	GGATG	3 cut(s)	122, 409, 568
BtsI	GCAGTG	2 cut(s)	12, 142
BtsIMutI	CAGTG	3 cut(s)	12, 142, 159
BtuMI	TCGCGA	1 cut(s)	518
Cac8I	GCNNGC	1 cut(s)	82
CaiI	CAGNNNCTG	1 cut(s)	81
CfoI	GCGC	4 cut(s)	80, 89, 305, 930
Cfr13I	GGNCC	2 cut(s)	638, 791
CseI	GACGC	1 cut(s)	416
CviAII	CATG	2 cut(s)	736, 955
DdeI	CTNAG	4 cut(s)	60, 168, 275, 915
DpnI	GATC	3 cut(s)	175, 846, 900
DpnII	GATC	3 cut(s)	173, 844, 898
Eam1104I	CTCTTC	1 cut(s)	734
EarI	CTCTTC	1 cut(s)	734
Eco130I	CCWWGG	2 cut(s)	787, 954
Eco47I	GGWCC	2 cut(s)	638, 791
EcoO109I	RGGNCCY	1 cut(s)	638
EcoRI	GAATTC	1 cut(s)	861
EcoRII	CCWGG	1 cut(s)	793
EcoT14I	CCWWGG	2 cut(s)	787, 954
ErhI	CCWWGG	2 cut(s)	787, 954
FaeI	CATG	2 cut(s)	739, 958
FaiI	YATR	9 cut(s)	342, 551, 644, 685, 737, 801, 878, 909, 956
FalI	AAGNNNNNCTT	2 cut(s)	824, 856
FaqI	GGGAC	2 cut(s)	651, 768
FatI	CATG	2 cut(s)	735, 954
FblI	GTMKAC	1 cut(s)	684
Fnu4HI	GCNGC	6 cut(s)	17, 85, 90, 483, 486, 974
FokI	GGATG	3 cut(s)	109, 416, 555
Fsp4HI	GCNGC	6 cut(s)	17, 85, 90, 483, 486, 974
FspBI	CTAG	1 cut(s)	657
FspI	TGCGCA	1 cut(s)	88
GlaI	GCGC	4 cut(s)	79, 88, 304, 929
GluI	GCNGC	6 cut(s)	17, 85, 90, 483, 486, 974
HaeII	RGCGCY	2 cut(s)	81, 306
HapII	CCGG	1 cut(s)	465
HgaI	GACGC	1 cut(s)	416
HhaI	GCGC	4 cut(s)	80, 89, 305, 930
Hin1II	CATG	2 cut(s)	739, 958
Hin6I	GCGC	4 cut(s)	78, 87, 303, 928
HinP1I	GCGC	4 cut(s)	78, 87, 303, 928
HincII	GTYRAC	2 cut(s)	12, 415
HindII	GTYRAC	2 cut(s)	12, 415
HindIII	AAGCTT	2 cut(s)	255, 727
HinfI	GANTC	7 cut(s)	49, 155, 212, 242, 649, 781, 814
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	2 cut(s)	44, 446
Hpy166II	GTNNAC	6 cut(s)	12, 159, 415, 454, 685, 757
Hpy188I	TCNGA	3 cut(s)	169, 241, 247
Hpy188III	TCNNGA	3 cut(s)	517, 902, 939
Hpy8I	GTNNAC	6 cut(s)	12, 159, 415, 454, 685, 757
HpyAV	CCTTC	2 cut(s)	205, 757
HpyCH4III	ACNGT	4 cut(s)	163, 383, 451, 622
HpyCH4V	TGCA	8 cut(s)	107, 135, 145, 152, 485, 497, 506, 873
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 86, 290, 494, 503
HpyF3I	CTNAG	4 cut(s)	60, 168, 275, 915
Hsp92II	CATG	2 cut(s)	739, 958
HspAI	GCGC	4 cut(s)	78, 87, 303, 928
Kzo9I	GATC	3 cut(s)	173, 844, 898
LmnI	GCTCC	1 cut(s)	440
Lsp1109I	GCAGC	5 cut(s)	28, 71, 101, 469, 497
LweI	GCATC	3 cut(s)	271, 860, 952
MaeI	CTAG	1 cut(s)	657
MaeIII	GTNAC	2 cut(s)	434, 811
MalI	GATC	3 cut(s)	175, 846, 900
MboI	GATC	3 cut(s)	173, 844, 898
MboII	GAAGA	4 cut(s)	356, 400, 704, 751
MflI	RGATCY	1 cut(s)	898
MluCI	AATT	3 cut(s)	348, 695, 861
MlyI	GAGTC	5 cut(s)	164, 221, 251, 790, 808
MmeI	TCCRAC	2 cut(s)	219, 403
MnlI	CCTC	5 cut(s)	283, 388, 876, 884, 910
MseI	TTAA	4 cut(s)	72, 528, 807, 923
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	2 cut(s)	466, 795
MvaI	CCWGG	1 cut(s)	795
MvnI	CGCG	2 cut(s)	518, 930
MwoI	GCNNNNNNNGC	5 cut(s)	84, 86, 290, 494, 503
NciI	CCSGG	1 cut(s)	466
NcoI	CCATGG	1 cut(s)	954
NdeII	GATC	3 cut(s)	173, 844, 898
NlaIII	CATG	2 cut(s)	739, 958
NlaIV	GGNNCC	3 cut(s)	558, 639, 952
NmuCI	GTSAC	2 cut(s)	434, 811
NruI	TCGCGA	1 cut(s)	518
NsbI	TGCGCA	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	49, 649
PkrI	GCNGC	6 cut(s)	18, 86, 91, 484, 487, 975
PleI	GAGTC	5 cut(s)	163, 220, 250, 789, 808
PpsI	GAGTC	5 cut(s)	163, 220, 250, 789, 808
PpuMI	RGGWCCY	1 cut(s)	638
Psp5II	RGGWCCY	1 cut(s)	638
Psp6I	CCWGG	1 cut(s)	793
PspGI	CCWGG	1 cut(s)	793
PspN4I	GGNNCC	3 cut(s)	558, 639, 952
PspPI	GGNCC	2 cut(s)	638, 791
PspPPI	RGGWCCY	1 cut(s)	638
PstI	CTGCAG	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	898
RruI	TCGCGA	1 cut(s)	518
SaqAI	TTAA	4 cut(s)	72, 528, 807, 923
SatI	GCNGC	6 cut(s)	17, 85, 90, 483, 486, 974
Sau3AI	GATC	3 cut(s)	173, 844, 898
Sau96I	GGNCC	2 cut(s)	638, 791
SchI	GAGTC	5 cut(s)	164, 221, 251, 790, 808
ScrFI	CCNGG	2 cut(s)	466, 795
SfaNI	GCATC	3 cut(s)	271, 860, 952
SfcI	CTRYAG	2 cut(s)	483, 876
SinI	GGWCC	2 cut(s)	638, 791
Sse9I	AATT	3 cut(s)	348, 695, 861
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	1 cut(s)	657
StyD4I	CCNGG	2 cut(s)	464, 793
StyI	CCWWGG	2 cut(s)	787, 954
TaaI	ACNGT	4 cut(s)	163, 383, 451, 622
TaqI	TCGA	2 cut(s)	761, 868
TasI	AATT	3 cut(s)	348, 695, 861
TfiI	GAWTC	2 cut(s)	49, 649
Tru1I	TTAA	4 cut(s)	72, 528, 807, 923
Tru9I	TTAA	4 cut(s)	72, 528, 807, 923
TscAI	CASTG	3 cut(s)	12, 142, 166
TseFI	GTSAC	2 cut(s)	434, 811
TseI	GCWGC	6 cut(s)	16, 84, 89, 482, 485, 973
Tsp45I	GTSAC	2 cut(s)	434, 811
TspDTI	ATGAA	6 cut(s)	33, 249, 357, 546, 593, 752
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	3 cut(s)	12, 142, 166
VpaK11BI	GGWCC	2 cut(s)	638, 791
XapI	RAATTY	1 cut(s)	861
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	684
XspI	CTAG	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.