Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002911

Physical Location & Seq

Genomic Coordinates Reverse (-)

64315745 .. 64319571

Gene Structure 3827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020372

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGTTCCCAATGCAAAGCAAATGAACCGATCAAGGAGTTGTAGTGTTGTGCTGTCCGCTTCGCCCTCTGTTTCCAAGAGATCAAACCAACCATTTACTTCTTTCAATGAGTTGATTGAGTCATTGATTAATCGAGTGGATTTATCAGAGTTGGAAGTCGAAGCTTCATTGGAGTTCTTGCTGAGTGATGCTGATGAGGCTCTGATCAGTGCATTTCTTTTACTATTGAGAGCAAAAGGAGAAACTTATGAAGAAATACTGGGGTTTGCAAAAGCAACGATGAAACACAGGGCTGCAATACTGGTTGTGGCTTGTGGTGCAAAAGTTGCAAAGCAAGGAAACCGTTCAAGTTCCTCTGCGTGTGGAAGTGCTGATGTATTAGAAGCTATGAAAGTAGCAATTGACTTGGACCCCAAGGGGGTGACTAGATGTGTGAATGAAGTGGGCATCGGTTTTATGTTGGCACCAAAATATCATCCAGCAATGAACGTCGTTCGTCCTGTTAGAAAAAAGCTAAAAGTAAGGACCGTATTCAATGTCTTAGGACCCATGTTGAATCCAGCCAGAGTGCTTTTTGCTGTTGTTAGTGTATATAAGGAAGACCTGATGTTCAAGATGGCCGAAGCACTGCAAAGCTTTGGCATTAAAAGAGCATTAGTCATTCACTTGGCGGGTTTGGATGAAATGAGCCCCCTTGGACCTGGGCATATTCTTGATGTGACTCCTGATAATATTTGTGAGTTCTCCTTTGATCCATTGGAGTTCGGAATTCCTCACTGCACTGTAGATGATTTGCGAGGTGGAAGCCCGGAGTATAATGCCAAGAGGCTTCCCGAACAAATGATGATATTGATATGGGAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004048 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0031967 GO:0031975 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Glycos_trans_3N Glycos_transf_3

Protein Analysis

289

Amino Acids

31.52

Weight (kDa)

6.54

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_trans_3N	PF02885	37 - 96	2.2e-11	Glycosyl transferase family, helical bundle domain
Glycos_transf_3	PF00591	97 - 278	9.5e-64	Glycosyl transferase family, a/b domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17990
fragaria_vesca	FvH4_5g05490
malus_domestica	MD06G1172000.v1.1 MD14G1177900.v1.1
prunus_persica	Prupe.5G171400_v2.0.a1
pyrus_communis	pycom06g15320 pycom14g14840
rosa_chinensis	RchiOBHm_Chr6g0263061 RchiOBHm_Chr6g0263071 RchiOBHm_Chr6g0263081 RchiOBHm_Chr7g0193331
rosa_laevigata	RLG00000004279 RLG00000014377 RLG00000014379 RLG00000014380 RLG00000014381 RLG00000014382 RLG00000020372
rosa_multiflora	Rmu_sc0013034.1_g000001 Rmu_ssc0000092.1_g000010
rosa_roxburghii	Rroxscaffold_3G00262210 Rroxscaffold_7G00204720 Rroxscaffold_7G00204730 Rroxscaffold_7G00204770
rosa_rugosa	Rorug06G0003300 Rorug06G0003400 Rorug07G0008900
rosa_samantha	Rh6BG115300 Rh6BG116400 Rh6BG116500 Rh6CG114000 Rh6CG114800 Rh7AG134700 Rh7CG138800 Rh7DG136800
rosa_wichuraiana	Rw6G010480 Rw6G010510 Rw7G011510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	463
AciI	CCGC	2 cut(s)	57, 671
AclWI	GGATC	1 cut(s)	746
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	1 cut(s)	768
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgsI	TTSAA	5 cut(s)	106, 348, 535, 556, 613
AjnI	CCWGG	1 cut(s)	700
AluBI	AGCT	5 cut(s)	164, 386, 514, 636, 864
AluI	AGCT	5 cut(s)	164, 386, 514, 636, 864
AlwI	GGATC	1 cut(s)	746
AoxI	GGCC	1 cut(s)	618
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	768
AseI	ATTAAT	1 cut(s)	129
Asp700I	GAANNNNTTC	1 cut(s)	343
AspS9I	GGNCC	4 cut(s)	409, 525, 545, 698
AsuC2I	CCSGG	1 cut(s)	809
AsuHPI	GGTGA	1 cut(s)	433
AvaII	GGWCC	4 cut(s)	409, 525, 545, 698
BanI	GGYRCC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	692
BbsI	GAAGAC	1 cut(s)	606
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	610
BciT130I	CCWGG	1 cut(s)	702
BclI	TGATCA	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	809
BfaI	CTAG	1 cut(s)	426
BfmI	CTRYAG	1 cut(s)	783
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	2 cut(s)	702, 809
Bme18I	GGWCC	4 cut(s)	409, 525, 545, 698
BmgT120I	GGNCC	4 cut(s)	409, 525, 545, 698
BmiI	GGNNCC	4 cut(s)	6, 411, 465, 547
BmrFI	CCNGG	2 cut(s)	702, 809
BmrI	ACTGGG	1 cut(s)	269
BmsI	GCATC	2 cut(s)	178, 456
BmuI	ACTGGG	1 cut(s)	269
BpiI	GAAGAC	1 cut(s)	606
BpuMI	CCSGG	1 cut(s)	809
BsaJI	CCNNGG	3 cut(s)	414, 694, 701
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse1I	ACTGG	2 cut(s)	264, 306
Bse3DI	GCAATG	1 cut(s)	489
BseBI	CCWGG	1 cut(s)	702
BseDI	CCNNGG	3 cut(s)	414, 694, 701
BseGI	GGATG	2 cut(s)	475, 685
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	2 cut(s)	264, 306
BseXI	GCAGC	1 cut(s)	280
BsgI	GTGCAG	1 cut(s)	763
BshFI	GGCC	1 cut(s)	620
BshNI	GGYRCC	1 cut(s)	463
BsiSI	CCGG	1 cut(s)	809
BslI	CCNNNNNNNGG	1 cut(s)	418
BsnI	GGCC	1 cut(s)	620
Bsp1286I	GDGCHC	1 cut(s)	692
Bsp143I	GATC	4 cut(s)	29, 80, 204, 751
BspACI	CCGC	2 cut(s)	57, 671
BspANI	GGCC	1 cut(s)	620
BspCNI	CTCAG	1 cut(s)	174
BspLI	GGNNCC	4 cut(s)	6, 411, 465, 547
BspPI	GGATC	1 cut(s)	746
BspT107I	GGYRCC	1 cut(s)	463
BsrDI	GCAATG	1 cut(s)	489
BsrI	ACTGG	2 cut(s)	264, 306
BssECI	CCNNGG	3 cut(s)	414, 694, 701
BssMI	GATC	4 cut(s)	29, 80, 204, 751
BssT1I	CCWWGG	2 cut(s)	414, 694
Bst2UI	CCWGG	1 cut(s)	702
Bst4CI	ACNGT	3 cut(s)	344, 529, 784
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstDEI	CTNAG	2 cut(s)	182, 541
BstF5I	GGATG	2 cut(s)	475, 685
BstKTI	GATC	4 cut(s)	32, 83, 207, 754
BstMBI	GATC	4 cut(s)	29, 80, 204, 751
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 317, 326
BstNI	CCWGG	1 cut(s)	702
BstSCI	CCNGG	2 cut(s)	700, 807
BstSFI	CTRYAG	1 cut(s)	783
BstV1I	GCAGC	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	620
BtsCI	GGATG	2 cut(s)	475, 685
BtsI	GCAGTG	2 cut(s)	626, 775
BtsIMutI	CAGTG	4 cut(s)	214, 626, 775, 780
Cfr13I	GGNCC	4 cut(s)	409, 525, 545, 698
CviAII	CATG	1 cut(s)	550
DdeI	CTNAG	2 cut(s)	182, 541
DpnI	GATC	4 cut(s)	31, 82, 206, 753
DpnII	GATC	4 cut(s)	29, 80, 204, 751
EaeI	YGGCCR	1 cut(s)	618
Eco130I	CCWWGG	2 cut(s)	414, 694
Eco24I	GRGCYC	1 cut(s)	692
Eco47I	GGWCC	4 cut(s)	409, 525, 545, 698
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRI	GAATTC	1 cut(s)	768
EcoRII	CCWGG	1 cut(s)	700
EcoT14I	CCWWGG	2 cut(s)	414, 694
EcoT38I	GRGCYC	1 cut(s)	692
ErhI	CCWWGG	2 cut(s)	414, 694
FaeI	CATG	1 cut(s)	553
FaiI	YATR	9 cut(s)	249, 389, 458, 551, 592, 594, 708, 816, 856
FatI	CATG	1 cut(s)	549
FauI	CCCGC	1 cut(s)	664
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	2 cut(s)	462, 692
FriOI	GRGCYC	1 cut(s)	692
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	426
GluI	GCNGC	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	620
HapII	CCGG	1 cut(s)	809
Hin1II	CATG	1 cut(s)	553
HindIII	AAGCTT	2 cut(s)	162, 634
HinfI	GANTC	3 cut(s)	119, 556, 721
HpaII	CCGG	1 cut(s)	809
HphI	GGTGA	1 cut(s)	433
Hpy188I	TCNGA	3 cut(s)	148, 204, 767
Hpy188III	TCNNGA	4 cut(s)	613, 713, 725, 833
Hpy99I	CGWCG	1 cut(s)	494
HpyCH4III	ACNGT	3 cut(s)	344, 529, 784
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	8 cut(s)	14, 212, 269, 296, 320, 329, 631, 780
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 317, 326
HpyF3I	CTNAG	2 cut(s)	182, 541
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	1 cut(s)	553
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	29, 80, 204, 751
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	2 cut(s)	178, 456
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	2 cut(s)	421, 718
MalI	GATC	4 cut(s)	31, 82, 206, 753
MboI	GATC	4 cut(s)	29, 80, 204, 751
MboII	GAAGA	2 cut(s)	263, 611
MfeI	CAATTG	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	692
MluCI	AATT	2 cut(s)	399, 768
MlyI	GAGTC	2 cut(s)	128, 715
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	6 cut(s)	76, 190, 364, 783, 791, 819
MroXI	GAANNNNTTC	1 cut(s)	343
MseI	TTAA	2 cut(s)	129, 645
MspI	CCGG	1 cut(s)	809
MspR9I	CCNGG	2 cut(s)	702, 809
MunI	CAATTG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	702
MwoI	GCNNNNNNNGC	3 cut(s)	197, 317, 326
NciI	CCSGG	1 cut(s)	809
NdeII	GATC	4 cut(s)	29, 80, 204, 751
NlaIII	CATG	1 cut(s)	553
NlaIV	GGNNCC	4 cut(s)	6, 411, 465, 547
NmuCI	GTSAC	2 cut(s)	421, 718
PdmI	GAANNNNTTC	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	556
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	2 cut(s)	127, 715
PpsI	GAGTC	2 cut(s)	127, 715
PpuMI	RGGWCCY	1 cut(s)	545
PshBI	ATTAAT	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	700
PspGI	CCWGG	1 cut(s)	700
PspN4I	GGNNCC	4 cut(s)	6, 411, 465, 547
PspPI	GGNCC	4 cut(s)	409, 525, 545, 698
PspPPI	RGGWCCY	1 cut(s)	545
SaqAI	TTAA	2 cut(s)	129, 645
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	4 cut(s)	29, 80, 204, 751
Sau96I	GGNCC	4 cut(s)	409, 525, 545, 698
SchI	GAGTC	2 cut(s)	128, 715
ScrFI	CCNGG	2 cut(s)	702, 809
SduI	GDGCHC	1 cut(s)	692
SetI	ASST	9 cut(s)	166, 388, 492, 516, 606, 638, 703, 802, 866
SfaNI	GCATC	2 cut(s)	178, 456
SfcI	CTRYAG	1 cut(s)	783
SinI	GGWCC	4 cut(s)	409, 525, 545, 698
Sse9I	AATT	2 cut(s)	399, 768
SsiI	CCGC	2 cut(s)	57, 671
SspI	AATATT	1 cut(s)	733
SspMI	CTAG	1 cut(s)	426
StyD4I	CCNGG	2 cut(s)	700, 807
StyI	CCWWGG	2 cut(s)	414, 694
TaaI	ACNGT	3 cut(s)	344, 529, 784
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	2 cut(s)	133, 159
TasI	AATT	2 cut(s)	399, 768
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	2 cut(s)	129, 645
Tru9I	TTAA	2 cut(s)	129, 645
TscAI	CASTG	4 cut(s)	214, 633, 782, 787
TseFI	GTSAC	2 cut(s)	421, 718
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	2 cut(s)	421, 718
TspDTI	ATGAA	8 cut(s)	38, 156, 264, 296, 404, 453, 500, 696
TspRI	CASTG	4 cut(s)	214, 633, 782, 787
VpaK11BI	GGWCC	4 cut(s)	409, 525, 545, 698
VspI	ATTAAT	1 cut(s)	129
XapI	RAATTY	1 cut(s)	768
XmnI	GAANNNNTTC	1 cut(s)	343
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.