Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013034.1

Orthogroup ID

OG0002911

Physical Location & Seq

Genomic Coordinates Reverse (-)

3437 .. 4551

Gene Structure 1115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013034.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgataaagcacagtttgaagattgagggcttggatgatgcagttgacattgttggaactggtggtgacggagcaaacacagtaaacatttcaaccggggcttcaatacttgttgcagcttgtggtgcaaaagttgcaaagcaaggtaatcgctcaagttcctctgcatgtggaagtgcagatgtattggaagctttgggaataataattgacttggaccctgagggggtcacgagatgtgttaatgaagtaggcattggttttatgatggcaccaaagtatcatcctgcaatgaatgtcgttcgtcccgtaaggaaaaagctaaaagtaaagattgtattcaacattttgggacctatgttgaatccagctagagttccttttgctgttgttggtgtatacaaggaagaattagtcctaaagatggctaaagcattacaaagctttggcatgaagagagcattggttgttcactcggagggcttggacgaaatgagtccccttggtaaactctatcttttacatgagattatgattatctggcaattctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004048 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0031967 GO:0031975 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Glycos_trans_3N Glycos_transf_3

Protein Analysis

183

Amino Acids

19.54

Weight (kDa)

8.76

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17990
fragaria_vesca	FvH4_5g05490
malus_domestica	MD06G1172000.v1.1 MD14G1177900.v1.1
prunus_persica	Prupe.5G171400_v2.0.a1
pyrus_communis	pycom06g15320 pycom14g14840
rosa_chinensis	RchiOBHm_Chr6g0263061 RchiOBHm_Chr6g0263071 RchiOBHm_Chr6g0263081 RchiOBHm_Chr7g0193331
rosa_laevigata	RLG00000004279 RLG00000014377 RLG00000014379 RLG00000014380 RLG00000014381 RLG00000014382 RLG00000020372
rosa_multiflora	Rmu_sc0013034.1_g000001 Rmu_ssc0000092.1_g000010
rosa_roxburghii	Rroxscaffold_3G00262210 Rroxscaffold_7G00204720 Rroxscaffold_7G00204730 Rroxscaffold_7G00204770
rosa_rugosa	Rorug06G0003300 Rorug06G0003400 Rorug07G0008900
rosa_samantha	Rh6BG115300 Rh6BG116400 Rh6BG116500 Rh6CG114000 Rh6CG114800 Rh7AG134700 Rh7CG138800 Rh7DG136800
rosa_wichuraiana	Rw6G010480 Rw6G010510 Rw7G011510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	271
AccI	GTMKAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	2 cut(s)	226, 424
AgsI	TTSAA	5 cut(s)	19, 93, 105, 343, 364
AjuI	GAANNNNNNNTTGG	4 cut(s)	240, 272, 446, 478
AluBI	AGCT	5 cut(s)	119, 194, 322, 371, 444
AluI	AGCT	5 cut(s)	119, 194, 322, 371, 444
ApeKI	GCWGC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	217, 353
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	2 cut(s)	217, 353
AxyI	CCTNAGG	1 cut(s)	222
BaeI	ACNNNNGTAYC	2 cut(s)	263, 296
BanI	GGYRCC	1 cut(s)	271
BauI	CACGAG	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	2 cut(s)	262, 418
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BcnI	CCSGG	1 cut(s)	97
BfaI	CTAG	1 cut(s)	372
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	97
Bme18I	GGWCC	2 cut(s)	217, 353
BmgT120I	GGNCC	2 cut(s)	217, 353
BmiI	GGNNCC	3 cut(s)	219, 273, 354
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	96, 502
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 424
Bse1I	ACTGG	1 cut(s)	64
Bse21I	CCTNAGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	96, 502
BseGI	GGATG	2 cut(s)	40, 283
BseLI	CCNNNNNNNGG	2 cut(s)	226, 424
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	128
BsgI	GTGCAG	1 cut(s)	198
BshNI	GGYRCC	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	3 cut(s)	291, 366, 483
BslI	CCNNNNNNNGG	2 cut(s)	226, 424
BsmFI	GGGAC	3 cut(s)	291, 366, 483
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	3 cut(s)	219, 273, 354
BspT107I	GGYRCC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	96, 502
BssNAI	GTATAC	1 cut(s)	400
BssSI	CACGAG	1 cut(s)	232
BssT1I	CCWWGG	1 cut(s)	502
Bst1107I	GTATAC	1 cut(s)	400
Bst2BI	CACGAG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	14, 82
Bst6I	CTCTTC	1 cut(s)	449
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	40, 283
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 134
BstNSI	RCATGY	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	128
BstZ17I	GTATAC	1 cut(s)	400
Bsu36I	CCTNAGG	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	40, 283
Cfr13I	GGNCC	2 cut(s)	217, 353
CviAII	CATG	3 cut(s)	168, 451, 524
CviJI	RGCY	9 cut(s)	30, 101, 119, 194, 322, 371, 428, 444, 483
CviKI_1	RGCY	9 cut(s)	30, 101, 119, 194, 322, 371, 428, 444, 483
DdeI	CTNAG	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Eco130I	CCWWGG	1 cut(s)	502
Eco47I	GGWCC	2 cut(s)	217, 353
Eco81I	CCTNAGG	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	3 cut(s)	171, 454, 527
FaiI	YATR	7 cut(s)	169, 266, 359, 400, 452, 525, 533
FaqI	GGGAC	3 cut(s)	291, 366, 483
FatI	CATG	3 cut(s)	167, 450, 523
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	2 cut(s)	47, 270
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	372
GluI	GCNGC	1 cut(s)	117
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	3 cut(s)	171, 454, 527
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HindIII	AAGCTT	2 cut(s)	192, 442
HinfI	GANTC	2 cut(s)	364, 496
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	5 cut(s)	46, 85, 400, 472, 509
Hpy188I	TCNGA	1 cut(s)	478
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	5 cut(s)	46, 85, 400, 472, 509
HpyCH4III	ACNGT	2 cut(s)	14, 82
HpyCH4V	TGCA	7 cut(s)	41, 116, 128, 137, 167, 179, 290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 134
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	171, 454, 527
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	6 cut(s)	45, 109, 234, 300, 381, 526
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	372
MaeIII	GTNAC	2 cut(s)	65, 229
MboII	GAAGA	3 cut(s)	31, 419, 466
MluCI	AATT	3 cut(s)	207, 410, 545
MlyI	GAGTC	1 cut(s)	505
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	4 cut(s)	19, 172, 217, 472
MseI	TTAA	1 cut(s)	243
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	2 cut(s)	125, 134
NciI	CCSGG	1 cut(s)	97
NlaIII	CATG	3 cut(s)	171, 454, 527
NlaIV	GGNNCC	3 cut(s)	219, 273, 354
NmuCI	GTSAC	2 cut(s)	65, 229
NspI	RCATGY	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	504
PpsI	GAGTC	1 cut(s)	504
PpuMI	RGGWCCY	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	353
PspN4I	GGNNCC	3 cut(s)	219, 273, 354
PspPI	GGNCC	2 cut(s)	217, 353
PspPPI	RGGWCCY	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	117
Sau96I	GGNCC	2 cut(s)	217, 353
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	1 cut(s)	97
SetI	ASST	7 cut(s)	121, 148, 196, 324, 358, 373, 446
SfaNI	GCATC	1 cut(s)	28
SinI	GGWCC	2 cut(s)	217, 353
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	3 cut(s)	207, 410, 545
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	2 cut(s)	14, 82
TasI	AATT	3 cut(s)	207, 410, 545
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseFI	GTSAC	2 cut(s)	65, 229
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	2 cut(s)	65, 229
TspDTI	ATGAA	3 cut(s)	261, 308, 467
TspGWI	ACGGA	1 cut(s)	84
VpaK11BI	GGWCC	2 cut(s)	217, 353
XceI	RCATGY	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	399
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.