Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002911

Physical Location & Seq

Genomic Coordinates Reverse (-)

52354925 .. 52356038

Gene Structure 1114 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014377

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGATAAAGCACAGTTTGAAGATTGAGGGCTTGGATGATGCAGTTGACATTGTTGGAACTGGTGGTGACGGAGCAAACACAGTAAACATTTCAACCGGGGCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTTGCAAAGCAAGGTAATCGTTCAAGTTCCTCTGCATGTGGAAGTGCAGATGTATTGGAAGCTTTGGGAATAATAATTGACTTGGACCCTGAGGTTGGGGTCGCGAGATGTGTTAATGAAGTAGGGATTGGTTTTATGATGGCACCAAAGTATCATCCAGCAATGAATGTCGTTCGTCCTGTAAGGAAAAAACTAAAAGTAAAGACTGTATTCAACATTTTGGGACCTATGTTGAATCCAGCTAGAGTTCCTTTTGCTGTTGTTGGTGTATACAAGGAAGAATTAGTCCTAAAGATGGCTAAAGCATTACAAAGCTTTGGCATGAAGAGAGCATTGGTTGTTCACTCGGAGGGCTTGGACGAAATGAGTCCCCTTGGTAAACTCTATCTTTTACATGAGATTATGATTATTTGGCAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004048 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0031967 GO:0031975 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Glycos_trans_3N Glycos_transf_3

Protein Analysis

185

Amino Acids

19.57

Weight (kDa)

8.76

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_transf_3	PF00591	12 - 171	2.2e-70	Glycosyl transferase family, a/b domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17990
fragaria_vesca	FvH4_5g05490
malus_domestica	MD06G1172000.v1.1 MD14G1177900.v1.1
prunus_persica	Prupe.5G171400_v2.0.a1
pyrus_communis	pycom06g15320 pycom14g14840
rosa_chinensis	RchiOBHm_Chr6g0263061 RchiOBHm_Chr6g0263071 RchiOBHm_Chr6g0263081 RchiOBHm_Chr7g0193331
rosa_laevigata	RLG00000004279 RLG00000014377 RLG00000014379 RLG00000014380 RLG00000014381 RLG00000014382 RLG00000020372
rosa_multiflora	Rmu_sc0013034.1_g000001 Rmu_ssc0000092.1_g000010
rosa_roxburghii	Rroxscaffold_3G00262210 Rroxscaffold_7G00204720 Rroxscaffold_7G00204730 Rroxscaffold_7G00204770
rosa_rugosa	Rorug06G0003300 Rorug06G0003400 Rorug07G0008900
rosa_samantha	Rh6BG115300 Rh6BG116400 Rh6BG116500 Rh6CG114000 Rh6CG114800 Rh7AG134700 Rh7CG138800 Rh7DG136800
rosa_wichuraiana	Rw6G010480 Rw6G010510 Rw7G011510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	402
AccII	CGCG	1 cut(s)	236
AfiI	CCNNNNNNNGG	2 cut(s)	227, 427
AgsI	TTSAA	6 cut(s)	19, 93, 105, 156, 346, 367
AjuI	GAANNNNNNNTTGG	4 cut(s)	243, 275, 449, 481
AluBI	AGCT	4 cut(s)	119, 194, 374, 447
AluI	AGCT	4 cut(s)	119, 194, 374, 447
ApeKI	GCWGC	2 cut(s)	113, 116
AspS9I	GGNCC	2 cut(s)	217, 356
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	2 cut(s)	217, 356
AxyI	CCTNAGG	1 cut(s)	222
BaeI	ACNNNNGTAYC	2 cut(s)	266, 299
BanI	GGYRCC	1 cut(s)	274
BbvI	GCAGC	2 cut(s)	100, 128
BccI	CCATC	2 cut(s)	265, 421
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BcnI	CCSGG	1 cut(s)	97
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	2 cut(s)	114, 117
BlsI	GCNGC	2 cut(s)	115, 118
Bme1390I	CCNGG	1 cut(s)	97
Bme18I	GGWCC	2 cut(s)	217, 356
BmgT120I	GGNCC	2 cut(s)	217, 356
BmiI	GGNNCC	3 cut(s)	219, 276, 357
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	1 cut(s)	28
BpuMI	CCSGG	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	96, 505
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 427
Bse1I	ACTGG	1 cut(s)	64
Bse21I	CCTNAGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	96, 505
BseGI	GGATG	2 cut(s)	40, 286
BseLI	CCNNNNNNNGG	2 cut(s)	227, 427
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	100, 128
BsgI	GTGCAG	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	236
BshNI	GGYRCC	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	96
BslFI	GGGAC	2 cut(s)	369, 486
BslI	CCNNNNNNNGG	2 cut(s)	227, 427
BsmFI	GGGAC	2 cut(s)	369, 486
Bsp68I	TCGCGA	1 cut(s)	236
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	236
BspLI	GGNNCC	3 cut(s)	219, 276, 357
BspMAI	CTGCAG	1 cut(s)	118
BspT107I	GGYRCC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	96, 505
BssNAI	GTATAC	1 cut(s)	403
BssT1I	CCWWGG	1 cut(s)	505
Bst1107I	GTATAC	1 cut(s)	403
Bst4CI	ACNGT	3 cut(s)	14, 82, 340
Bst6I	CTCTTC	1 cut(s)	452
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	40, 286
BstFNI	CGCG	1 cut(s)	236
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 134
BstNSI	RCATGY	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	114
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	2 cut(s)	100, 128
BstZ17I	GTATAC	1 cut(s)	403
Bsu36I	CCTNAGG	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	40, 286
BtuMI	TCGCGA	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	217, 356
CviAII	CATG	3 cut(s)	168, 454, 527
CviJI	RGCY	8 cut(s)	30, 101, 119, 194, 374, 431, 447, 486
CviKI_1	RGCY	8 cut(s)	30, 101, 119, 194, 374, 431, 447, 486
DdeI	CTNAG	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Eco130I	CCWWGG	1 cut(s)	505
Eco47I	GGWCC	2 cut(s)	217, 356
Eco81I	CCTNAGG	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	505
FaeI	CATG	3 cut(s)	171, 457, 530
FaiI	YATR	7 cut(s)	169, 269, 362, 403, 455, 528, 536
FaqI	GGGAC	2 cut(s)	369, 486
FatI	CATG	3 cut(s)	167, 453, 526
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	114, 117
FokI	GGATG	2 cut(s)	47, 273
Fsp4HI	GCNGC	2 cut(s)	114, 117
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	2 cut(s)	114, 117
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	3 cut(s)	171, 457, 530
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HindIII	AAGCTT	2 cut(s)	192, 445
HinfI	GANTC	2 cut(s)	367, 499
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	5 cut(s)	46, 85, 403, 475, 512
Hpy188I	TCNGA	1 cut(s)	481
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	5 cut(s)	46, 85, 403, 475, 512
HpyCH4III	ACNGT	3 cut(s)	14, 82, 340
HpyCH4V	TGCA	6 cut(s)	41, 116, 128, 137, 167, 179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 134
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	171, 457, 530
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	6 cut(s)	45, 109, 234, 303, 324, 384
Lsp1109I	GCAGC	2 cut(s)	100, 128
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	65
MboII	GAAGA	3 cut(s)	31, 422, 469
MluCI	AATT	3 cut(s)	207, 413, 548
MlyI	GAGTC	1 cut(s)	508
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	4 cut(s)	19, 172, 217, 475
MseI	TTAA	1 cut(s)	246
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	97
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	2 cut(s)	125, 134
NciI	CCSGG	1 cut(s)	97
NlaIII	CATG	3 cut(s)	171, 457, 530
NlaIV	GGNNCC	3 cut(s)	219, 276, 357
NmuCI	GTSAC	1 cut(s)	65
NruI	TCGCGA	1 cut(s)	236
NspI	RCATGY	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	115, 118
PleI	GAGTC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	507
PpuMI	RGGWCCY	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	356
PspN4I	GGNNCC	3 cut(s)	219, 276, 357
PspPI	GGNCC	2 cut(s)	217, 356
PspPPI	RGGWCCY	1 cut(s)	356
PstI	CTGCAG	1 cut(s)	118
RruI	TCGCGA	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	2 cut(s)	114, 117
Sau96I	GGNCC	2 cut(s)	217, 356
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	1 cut(s)	97
SetI	ASST	7 cut(s)	121, 148, 196, 228, 361, 376, 449
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	1 cut(s)	114
SinI	GGWCC	2 cut(s)	217, 356
Sse9I	AATT	3 cut(s)	207, 413, 548
SspMI	CTAG	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	505
TaaI	ACNGT	3 cut(s)	14, 82, 340
TasI	AATT	3 cut(s)	207, 413, 548
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	2 cut(s)	113, 116
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	3 cut(s)	264, 311, 470
TspGWI	ACGGA	1 cut(s)	84
VpaK11BI	GGWCC	2 cut(s)	217, 356
XceI	RCATGY	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	402
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.