Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002911

Physical Location & Seq

Genomic Coordinates Reverse (-)

54199242 .. 54206587

Gene Structure 7346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00204720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGATGGCACCAAAGTATCATCCTGCAATGAATGTCGTTCGTCCCGTAAGGAAAAAGCTAAAAGTAAAGACCGTATTCAACATTTTGGGACCTATGTTGAATCCAGCTAGAGTTCCTTTTGCTGTTGTTGGTGTATACAAGGAAGAATTAGTCCTAAAGATGGCTAAAGCATTACAAAGCTTTGGCATGAAGAGAGCATTGGTTGTTCACTCGGAGGGCTTGGACGAAATGAGTCCCCTTGGCTGGGATGCAACTAGAATTCTAGATTGGTGTAGACACTTTGAGATACTTTCACTTGTGAATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004048 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0031967 GO:0031975 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Glycos_trans_3N Glycos_transf_3

Protein Analysis

102

Amino Acids

11.55

Weight (kDa)

9.93

Isoelectric Point (pI)

61.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_transf_3	PF00591	1 - 82	5.1e-30	Glycosyl transferase family, a/b domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17990
fragaria_vesca	FvH4_5g05490
malus_domestica	MD06G1172000.v1.1 MD14G1177900.v1.1
prunus_persica	Prupe.5G171400_v2.0.a1
pyrus_communis	pycom06g15320 pycom14g14840
rosa_chinensis	RchiOBHm_Chr6g0263061 RchiOBHm_Chr6g0263071 RchiOBHm_Chr6g0263081 RchiOBHm_Chr7g0193331
rosa_laevigata	RLG00000004279 RLG00000014377 RLG00000014379 RLG00000014380 RLG00000014381 RLG00000014382 RLG00000020372
rosa_multiflora	Rmu_sc0013034.1_g000001 Rmu_ssc0000092.1_g000010
rosa_roxburghii	Rroxscaffold_3G00262210 Rroxscaffold_7G00204720 Rroxscaffold_7G00204730 Rroxscaffold_7G00204770
rosa_rugosa	Rorug06G0003300 Rorug06G0003400 Rorug07G0008900
rosa_samantha	Rh6BG115300 Rh6BG116400 Rh6BG116500 Rh6CG114000 Rh6CG114800 Rh7AG134700 Rh7CG138800 Rh7DG136800
rosa_wichuraiana	Rw6G010480 Rw6G010510 Rw7G011510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AccI	GTMKAC	2 cut(s)	135, 274
AcsI	RAATTY	1 cut(s)	258
AfiI	CCNNNNNNNGG	3 cut(s)	160, 243, 244
AgsI	TTSAA	2 cut(s)	79, 100
AjuI	GAANNNNNNNTTGG	4 cut(s)	182, 214, 250, 282
AluBI	AGCT	3 cut(s)	58, 107, 180
AluI	AGCT	3 cut(s)	58, 107, 180
ApoI	RAATTY	1 cut(s)	258
AspS9I	GGNCC	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	89
BaeI	ACNNNNGTAYC	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	7
BccI	CCATC	1 cut(s)	154
BfaI	CTAG	3 cut(s)	108, 255, 263
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	2 cut(s)	9, 90
BmsI	GCATC	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 243, 244
Bse3DI	GCAATG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	2 cut(s)	19, 253
BseLI	CCNNNNNNNGG	3 cut(s)	160, 243, 244
BseMI	GCAATG	1 cut(s)	33
BseYI	CCCAGC	1 cut(s)	243
BshNI	GGYRCC	1 cut(s)	7
BslFI	GGGAC	3 cut(s)	27, 102, 219
BslI	CCNNNNNNNGG	3 cut(s)	160, 243, 244
BsmFI	GGGAC	3 cut(s)	27, 102, 219
BsmI	GAATGC	1 cut(s)	307
BspLI	GGNNCC	2 cut(s)	9, 90
BspT107I	GGYRCC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	238
BssNAI	GTATAC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	238
Bst1107I	GTATAC	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	185
BstF5I	GGATG	2 cut(s)	19, 253
BstZ17I	GTATAC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	19, 253
Cfr13I	GGNCC	1 cut(s)	89
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	6 cut(s)	58, 107, 164, 180, 219, 243
CviKI_1	RGCY	6 cut(s)	58, 107, 164, 180, 219, 243
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRI	GAATTC	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	238
EcoT22I	ATGCAT	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	1 cut(s)	190
FaiI	YATR	4 cut(s)	95, 136, 188, 307
FaqI	GGGAC	3 cut(s)	27, 102, 219
FatI	CATG	1 cut(s)	186
FblI	GTMKAC	2 cut(s)	135, 274
FokI	GGATG	2 cut(s)	6, 260
FspBI	CTAG	3 cut(s)	108, 255, 263
GsaI	CCCAGC	1 cut(s)	247
Hin1II	CATG	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	178
HinfI	GANTC	2 cut(s)	100, 232
Hpy166II	GTNNAC	3 cut(s)	136, 208, 275
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	263
Hpy8I	GTNNAC	3 cut(s)	136, 208, 275
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	3 cut(s)	26, 251, 305
Hsp92II	CATG	1 cut(s)	190
LpnPI	CCDG	3 cut(s)	36, 117, 229
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	3 cut(s)	108, 255, 263
MboII	GAAGA	2 cut(s)	155, 202
MluCI	AATT	2 cut(s)	146, 258
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	1 cut(s)	208
Mph1103I	ATGCAT	1 cut(s)	307
Mva1269I	GAATGC	1 cut(s)	307
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	2 cut(s)	9, 90
NsiI	ATGCAT	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
PpuMI	RGGWCCY	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	9, 90
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	241
SetI	ASST	4 cut(s)	60, 94, 109, 182
SfaNI	GCATC	1 cut(s)	238
SinI	GGWCC	1 cut(s)	89
Sse9I	AATT	2 cut(s)	146, 258
SspMI	CTAG	3 cut(s)	108, 255, 263
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	73
TasI	AATT	2 cut(s)	146, 258
TfiI	GAWTC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	44, 203
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	258
XbaI	TCTAGA	1 cut(s)	262
XmiI	GTMKAC	2 cut(s)	135, 274
XspI	CTAG	3 cut(s)	108, 255, 263
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.