Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002911

Physical Location & Seq

Genomic Coordinates Forward (+)

17994924 .. 18003672

Gene Structure 8749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG116500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGATTGAACAAATTGTGGGATTAGCAAAGGCAATGATAAAGCACAGTTTGAAGATTGAGGGCTTGGATGATGCAGTTGACATTGTTGGAACTGGTGGTGACAGAGCAAACACAGTAAACATTTCAACCGGGGCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTTGCAAAGCAAGGTAATCGTTCAAGTTCCTCTGCATGTGGAAGTGCAGATGTATTGGAAGCTTTGGGAATAATAATTGACTTGGACCCTGAGGGGGTCACGAGATGTGTTAATGAAGTAGGCATTGGTTTTATGATGGCACCAAAGTATCATCCTGCAATGAATGTCGTTCGTCCCGTAAGGAAAAAGCTAAAAGTAAAGACTGTATTCAACATTTTGGGACCTATGTTGAATCCAGCTAGAGTTCCTTTTGCTGTTGTTGGTGTATACAAGGAAGAATTAGTCCTAAAGATGGCTAAAGCATTACAAAGCTTTGGCATGAAGAGAGCATTGGTTGTTCACTCGGAGGGCTTGGACGAAATGAGTCCCCTTGGCTGGGATGCAACTGTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004048 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0031967 GO:0031975 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Glycos_trans_3N Glycos_transf_3

Protein Analysis

186

Amino Acids

19.6

Weight (kDa)

8.77

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_transf_3	PF00591	23 - 180	5.2e-71	Glycosyl transferase family, a/b domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17990
fragaria_vesca	FvH4_5g05490
malus_domestica	MD06G1172000.v1.1 MD14G1177900.v1.1
prunus_persica	Prupe.5G171400_v2.0.a1
pyrus_communis	pycom06g15320 pycom14g14840
rosa_chinensis	RchiOBHm_Chr6g0263061 RchiOBHm_Chr6g0263071 RchiOBHm_Chr6g0263081 RchiOBHm_Chr7g0193331
rosa_laevigata	RLG00000004279 RLG00000014377 RLG00000014379 RLG00000014380 RLG00000014381 RLG00000014382 RLG00000020372
rosa_multiflora	Rmu_sc0013034.1_g000001 Rmu_ssc0000092.1_g000010
rosa_roxburghii	Rroxscaffold_3G00262210 Rroxscaffold_7G00204720 Rroxscaffold_7G00204730 Rroxscaffold_7G00204770
rosa_rugosa	Rorug06G0003300 Rorug06G0003400 Rorug07G0008900
rosa_samantha	Rh6BG115300 Rh6BG116400 Rh6BG116500 Rh6CG114000 Rh6CG114800 Rh7AG134700 Rh7CG138800 Rh7DG136800
rosa_wichuraiana	Rw6G010480 Rw6G010510 Rw7G011510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	304
AccI	GTMKAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	4 cut(s)	259, 457, 540, 541
AgsI	TTSAA	7 cut(s)	8, 52, 126, 138, 189, 376, 397
AjuI	GAANNNNNNNTTGG	4 cut(s)	273, 305, 479, 511
AluBI	AGCT	5 cut(s)	152, 227, 355, 404, 477
AluI	AGCT	5 cut(s)	152, 227, 355, 404, 477
ApeKI	GCWGC	2 cut(s)	146, 149
AspS9I	GGNCC	2 cut(s)	250, 386
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	250, 386
AxyI	CCTNAGG	1 cut(s)	255
BaeI	ACNNNNGTAYC	2 cut(s)	296, 329
BanI	GGYRCC	1 cut(s)	304
BauI	CACGAG	1 cut(s)	265
BbvI	GCAGC	2 cut(s)	133, 161
BccI	CCATC	2 cut(s)	295, 451
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BcnI	CCSGG	1 cut(s)	130
BfaI	CTAG	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	147
BisI	GCNGC	2 cut(s)	147, 150
BlsI	GCNGC	2 cut(s)	148, 151
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	2 cut(s)	250, 386
BmgT120I	GGNCC	2 cut(s)	250, 386
BmiI	GGNNCC	3 cut(s)	252, 306, 387
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	61, 535
BpuMI	CCSGG	1 cut(s)	130
BsaJI	CCNNGG	2 cut(s)	129, 535
Bsc4I	CCNNNNNNNGG	4 cut(s)	259, 457, 540, 541
Bse1I	ACTGG	1 cut(s)	97
Bse21I	CCTNAGG	1 cut(s)	255
Bse3DI	GCAATG	2 cut(s)	39, 330
BseDI	CCNNGG	2 cut(s)	129, 535
BseGI	GGATG	3 cut(s)	73, 316, 550
BseLI	CCNNNNNNNGG	4 cut(s)	259, 457, 540, 541
BseMI	GCAATG	2 cut(s)	39, 330
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	97
BseXI	GCAGC	2 cut(s)	133, 161
BseYI	CCCAGC	1 cut(s)	540
BsgI	GTGCAG	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	3 cut(s)	324, 399, 516
BslI	CCNNNNNNNGG	4 cut(s)	259, 457, 540, 541
BsmFI	GGGAC	3 cut(s)	324, 399, 516
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	3 cut(s)	252, 306, 387
BspMAI	CTGCAG	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	304
BsrDI	GCAATG	2 cut(s)	39, 330
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	129, 535
BssNAI	GTATAC	1 cut(s)	433
BssSI	CACGAG	1 cut(s)	265
BssT1I	CCWWGG	1 cut(s)	535
Bst1107I	GTATAC	1 cut(s)	433
Bst2BI	CACGAG	1 cut(s)	265
Bst4CI	ACNGT	4 cut(s)	47, 115, 370, 553
Bst6I	CTCTTC	1 cut(s)	482
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	3 cut(s)	73, 316, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 167
BstNSI	RCATGY	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	133, 161
BstZ17I	GTATAC	1 cut(s)	433
Bsu36I	CCTNAGG	1 cut(s)	255
BtsCI	GGATG	3 cut(s)	73, 316, 550
Cfr13I	GGNCC	2 cut(s)	250, 386
CviAII	CATG	2 cut(s)	201, 484
DdeI	CTNAG	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	482
EarI	CTCTTC	1 cut(s)	482
Eco130I	CCWWGG	1 cut(s)	535
Eco47I	GGWCC	2 cut(s)	250, 386
Eco81I	CCTNAGG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	386
EcoT14I	CCWWGG	1 cut(s)	535
ErhI	CCWWGG	1 cut(s)	535
FaeI	CATG	2 cut(s)	204, 487
FaiI	YATR	5 cut(s)	202, 299, 392, 433, 485
FaqI	GGGAC	3 cut(s)	324, 399, 516
FatI	CATG	2 cut(s)	200, 483
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	2 cut(s)	147, 150
FokI	GGATG	3 cut(s)	80, 303, 557
Fsp4HI	GCNGC	2 cut(s)	147, 150
FspBI	CTAG	1 cut(s)	405
GluI	GCNGC	2 cut(s)	147, 150
GsaI	CCCAGC	1 cut(s)	544
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	2 cut(s)	204, 487
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	2 cut(s)	225, 475
HinfI	GANTC	2 cut(s)	397, 529
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	4 cut(s)	79, 118, 433, 505
Hpy188I	TCNGA	1 cut(s)	511
Hpy188III	TCNNGA	1 cut(s)	265
Hpy8I	GTNNAC	4 cut(s)	79, 118, 433, 505
HpyCH4III	ACNGT	4 cut(s)	47, 115, 370, 553
HpyCH4V	TGCA	8 cut(s)	74, 149, 161, 170, 200, 212, 323, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 167
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	204, 487
LpnPI	CCDG	6 cut(s)	78, 142, 267, 333, 414, 526
Lsp1109I	GCAGC	2 cut(s)	133, 161
LweI	GCATC	2 cut(s)	61, 535
MaeI	CTAG	1 cut(s)	405
MaeIII	GTNAC	2 cut(s)	98, 262
MboII	GAAGA	3 cut(s)	64, 452, 499
MluCI	AATT	3 cut(s)	12, 240, 443
MlyI	GAGTC	1 cut(s)	538
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	4 cut(s)	52, 205, 250, 505
MseI	TTAA	1 cut(s)	276
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	158, 167
NciI	CCSGG	1 cut(s)	130
NlaIII	CATG	2 cut(s)	204, 487
NlaIV	GGNNCC	3 cut(s)	252, 306, 387
NmuCI	GTSAC	2 cut(s)	98, 262
NspI	RCATGY	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	397
PkrI	GCNGC	2 cut(s)	148, 151
PleI	GAGTC	1 cut(s)	537
PpsI	GAGTC	1 cut(s)	537
PpuMI	RGGWCCY	1 cut(s)	386
Psp5II	RGGWCCY	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	540
PspN4I	GGNNCC	3 cut(s)	252, 306, 387
PspPI	GGNCC	2 cut(s)	250, 386
PspPPI	RGGWCCY	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	2 cut(s)	147, 150
Sau96I	GGNCC	2 cut(s)	250, 386
SchI	GAGTC	1 cut(s)	538
ScrFI	CCNGG	1 cut(s)	130
SetI	ASST	7 cut(s)	154, 181, 229, 357, 391, 406, 479
SfaNI	GCATC	2 cut(s)	61, 535
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	2 cut(s)	250, 386
Sse9I	AATT	3 cut(s)	12, 240, 443
SspMI	CTAG	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	535
TaaI	ACNGT	4 cut(s)	47, 115, 370, 553
TasI	AATT	3 cut(s)	12, 240, 443
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TseFI	GTSAC	2 cut(s)	98, 262
TseI	GCWGC	2 cut(s)	146, 149
Tsp45I	GTSAC	2 cut(s)	98, 262
TspDTI	ATGAA	3 cut(s)	294, 341, 500
VpaK11BI	GGWCC	2 cut(s)	250, 386
XceI	RCATGY	1 cut(s)	204
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.