Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002911

Physical Location & Seq

Genomic Coordinates Reverse (-)

52399403 .. 52402360

Gene Structure 2958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014382

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCAGTGTCAACGCAGCTTCACTCACTTACCACTCTTGCTTCATTGACTCACCGCACTAAGGTCAAGTTTAACAGCGCCTGCTGCGCAGCTCTGTTTCCCAATGCAAAGCAAACAAGCCCATCCACGCTTTGCAGTGCTGTGCAGAGTGCACAGTCCACTGTTTCTGAGAGATCAAACCCACCATTTACTTCATTCAATGAGTTGATTGAGTCCTTGATTGATAAGGTGGATTTGTCGGAGTCCGAAGCCAAAGCTTCATTGGAGTTCTTGCTGAGTGATGCTAATGAGGCTTTGATTAGCGCCTTTCTTGTGTTGTTGAGAGCCAAAGGAGAGACTTATGAAGAAATTGTGGGATTAGCAAAGGCAATGATAAAGCACAGTTTGAAGATTGAGGGCTTGGATGACGCAGTTGACATTGTTGGAACTGGTGGTGACGGAGCAAACACAGTAAACATTTCAACCGGGGCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTTGCAAAGCAAGGTAATCGTTCAAGTTCCTCTGCATGTGGAAGTGCAGATGTATTGGAAGCTTTGGGAATAATAATTGACTTGGACCCTGAGGGGGTCGCGAGATGTGTTAATGAAGTAGGGTTTGGTTTTATGATGGCACCAAAGTATCATCCAGCAATGAATGTCGTTCGTCCTGTAAGGAAAAAGCTAAAAGTAAAGACTGTATTCAACATTTTGGGACCTATGTTGAATCCAGCTAGAGTTCCTTTTGCTGTTGTTGGTGTATACAAGGAAGAATTAGTCCTAAAGATGGCTAAAGCATTACAAAGCTTTGGCATGAAGAGAGCATTGGTTGTTCACTCGGAGGGCTTGGACGAAATGAGTCCCCTTGGTAAACTCTATCTTTTACATGAGATTATGATTATTTGGCAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004048 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0031967 GO:0031975 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Glycos_trans_3N Glycos_transf_3

Protein Analysis

307

Amino Acids

32.64

Weight (kDa)

7.0

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_trans_3N	PF02885	68 - 127	8.8e-16	Glycosyl transferase family, helical bundle domain
Glycos_transf_3	PF00591	135 - 293	7.7e-72	Glycosyl transferase family, a/b domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17990
fragaria_vesca	FvH4_5g05490
malus_domestica	MD06G1172000.v1.1 MD14G1177900.v1.1
prunus_persica	Prupe.5G171400_v2.0.a1
pyrus_communis	pycom06g15320 pycom14g14840
rosa_chinensis	RchiOBHm_Chr6g0263061 RchiOBHm_Chr6g0263071 RchiOBHm_Chr6g0263081 RchiOBHm_Chr7g0193331
rosa_laevigata	RLG00000004279 RLG00000014377 RLG00000014379 RLG00000014380 RLG00000014381 RLG00000014382 RLG00000020372
rosa_multiflora	Rmu_sc0013034.1_g000001 Rmu_ssc0000092.1_g000010
rosa_roxburghii	Rroxscaffold_3G00262210 Rroxscaffold_7G00204720 Rroxscaffold_7G00204730 Rroxscaffold_7G00204770
rosa_rugosa	Rorug06G0003300 Rorug06G0003400 Rorug07G0008900
rosa_samantha	Rh6BG115300 Rh6BG116400 Rh6BG116500 Rh6CG114000 Rh6CG114800 Rh7AG134700 Rh7CG138800 Rh7DG136800
rosa_wichuraiana	Rw6G010480 Rw6G010510 Rw7G011510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	88
AccB1I	GGYRCC	1 cut(s)	640
AccI	GTMKAC	1 cut(s)	768
AccII	CGCG	1 cut(s)	602
AciI	CCGC	1 cut(s)	55
AfiI	CCNNNNNNNGG	3 cut(s)	61, 595, 793
AgsI	TTSAA	7 cut(s)	199, 388, 462, 474, 525, 712, 733
AjuI	GAANNNNNNNTTGG	4 cut(s)	609, 641, 815, 847
AluBI	AGCT	8 cut(s)	19, 92, 257, 488, 563, 691, 740, 813
AluI	AGCT	8 cut(s)	19, 92, 257, 488, 563, 691, 740, 813
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	329
Alw44I	GTGCAC	1 cut(s)	150
AlwNI	CAGNNNCTG	1 cut(s)	81
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	5 cut(s)	16, 84, 89, 482, 485
AspLEI	GCGC	3 cut(s)	80, 89, 305
AspS9I	GGNCC	2 cut(s)	586, 722
AsuC2I	CCSGG	1 cut(s)	466
AsuHPI	GGTGA	2 cut(s)	44, 446
AvaII	GGWCC	2 cut(s)	586, 722
AxyI	CCTNAGG	1 cut(s)	591
BaeGI	GKGCMC	1 cut(s)	154
BaeI	ACNNNNGTAYC	2 cut(s)	632, 665
BanI	GGYRCC	1 cut(s)	640
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	5 cut(s)	28, 71, 101, 469, 497
BccI	CCATC	3 cut(s)	130, 631, 787
BcgI	CGANNNNNNTGC	2 cut(s)	500, 534
BcnI	CCSGG	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	1 cut(s)	741
BfmI	CTRYAG	1 cut(s)	483
BfoI	RGCGCY	2 cut(s)	81, 306
BisI	GCNGC	5 cut(s)	17, 85, 90, 483, 486
BlsI	GCNGC	5 cut(s)	18, 86, 91, 484, 487
Bme1390I	CCNGG	1 cut(s)	466
Bme18I	GGWCC	2 cut(s)	586, 722
BmgT120I	GGNCC	2 cut(s)	586, 722
BmiI	GGNNCC	3 cut(s)	588, 642, 723
BmrFI	CCNGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	271
BpuMI	CCSGG	1 cut(s)	466
BsaJI	CCNNGG	2 cut(s)	465, 871
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 595, 793
Bse1I	ACTGG	1 cut(s)	433
Bse21I	CCTNAGG	1 cut(s)	591
Bse3DI	GCAATG	2 cut(s)	375, 666
BseDI	CCNNGG	2 cut(s)	465, 871
BseGI	GGATG	3 cut(s)	122, 409, 652
BseLI	CCNNNNNNNGG	3 cut(s)	61, 595, 793
BseMI	GCAATG	2 cut(s)	375, 666
BseMII	CTCAG	3 cut(s)	159, 266, 582
BseNI	ACTGG	1 cut(s)	433
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	5 cut(s)	28, 71, 101, 469, 497
BsgI	GTGCAG	2 cut(s)	164, 567
Bsh1236I	CGCG	1 cut(s)	602
BshNI	GGYRCC	1 cut(s)	640
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	2 cut(s)	735, 852
BslI	CCNNNNNNNGG	3 cut(s)	61, 595, 793
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	2 cut(s)	735, 852
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	173
Bsp68I	TCGCGA	1 cut(s)	602
BspACI	CCGC	1 cut(s)	55
BspCNI	CTCAG	3 cut(s)	160, 267, 583
BspFNI	CGCG	1 cut(s)	602
BspLI	GGNNCC	3 cut(s)	588, 642, 723
BspMAI	CTGCAG	1 cut(s)	487
BspT107I	GGYRCC	1 cut(s)	640
BsrDI	GCAATG	2 cut(s)	375, 666
BsrI	ACTGG	1 cut(s)	433
BssECI	CCNNGG	2 cut(s)	465, 871
BssMI	GATC	1 cut(s)	173
BssNAI	GTATAC	1 cut(s)	769
BssT1I	CCWWGG	1 cut(s)	871
Bst1107I	GTATAC	1 cut(s)	769
Bst4CI	ACNGT	5 cut(s)	156, 163, 383, 451, 706
Bst6I	CTCTTC	1 cut(s)	818
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	4 cut(s)	60, 168, 275, 591
BstF5I	GGATG	3 cut(s)	122, 409, 652
BstFNI	CGCG	1 cut(s)	602
BstH2I	RGCGCY	2 cut(s)	81, 306
BstHHI	GCGC	3 cut(s)	80, 89, 305
BstKTI	GATC	1 cut(s)	176
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 86, 290, 494, 503
BstNSI	RCATGY	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	464
BstSFI	CTRYAG	1 cut(s)	483
BstSLI	GKGCMC	1 cut(s)	154
BstUI	CGCG	1 cut(s)	602
BstV1I	GCAGC	5 cut(s)	28, 71, 101, 469, 497
BstZ17I	GTATAC	1 cut(s)	769
Bsu36I	CCTNAGG	1 cut(s)	591
BtsCI	GGATG	3 cut(s)	122, 409, 652
BtsI	GCAGTG	2 cut(s)	12, 142
BtsIMutI	CAGTG	3 cut(s)	12, 142, 159
BtuMI	TCGCGA	1 cut(s)	602
Cac8I	GCNNGC	1 cut(s)	82
CaiI	CAGNNNCTG	1 cut(s)	81
CfoI	GCGC	3 cut(s)	80, 89, 305
Cfr13I	GGNCC	2 cut(s)	586, 722
CseI	GACGC	1 cut(s)	416
CviAII	CATG	3 cut(s)	537, 820, 893
DdeI	CTNAG	4 cut(s)	60, 168, 275, 591
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	818
EarI	CTCTTC	1 cut(s)	818
Eco130I	CCWWGG	1 cut(s)	871
Eco47I	GGWCC	2 cut(s)	586, 722
Eco81I	CCTNAGG	1 cut(s)	591
EcoO109I	RGGNCCY	1 cut(s)	722
EcoT14I	CCWWGG	1 cut(s)	871
ErhI	CCWWGG	1 cut(s)	871
FaeI	CATG	3 cut(s)	540, 823, 896
FaiI	YATR	8 cut(s)	342, 538, 635, 728, 769, 821, 894, 902
FaqI	GGGAC	2 cut(s)	735, 852
FatI	CATG	3 cut(s)	536, 819, 892
FblI	GTMKAC	1 cut(s)	768
Fnu4HI	GCNGC	5 cut(s)	17, 85, 90, 483, 486
FokI	GGATG	3 cut(s)	109, 416, 639
Fsp4HI	GCNGC	5 cut(s)	17, 85, 90, 483, 486
FspBI	CTAG	1 cut(s)	741
FspI	TGCGCA	1 cut(s)	88
GlaI	GCGC	3 cut(s)	79, 88, 304
GluI	GCNGC	5 cut(s)	17, 85, 90, 483, 486
HaeII	RGCGCY	2 cut(s)	81, 306
HapII	CCGG	1 cut(s)	465
HgaI	GACGC	1 cut(s)	416
HhaI	GCGC	3 cut(s)	80, 89, 305
Hin1II	CATG	3 cut(s)	540, 823, 896
Hin6I	GCGC	3 cut(s)	78, 87, 303
HinP1I	GCGC	3 cut(s)	78, 87, 303
HincII	GTYRAC	2 cut(s)	12, 415
HindII	GTYRAC	2 cut(s)	12, 415
HindIII	AAGCTT	3 cut(s)	255, 561, 811
HinfI	GANTC	5 cut(s)	49, 212, 242, 733, 865
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	2 cut(s)	44, 446
Hpy166II	GTNNAC	8 cut(s)	12, 152, 159, 415, 454, 769, 841, 878
Hpy188I	TCNGA	4 cut(s)	169, 241, 247, 847
Hpy188III	TCNNGA	1 cut(s)	601
Hpy8I	GTNNAC	8 cut(s)	12, 152, 159, 415, 454, 769, 841, 878
HpyCH4III	ACNGT	5 cut(s)	156, 163, 383, 451, 706
HpyCH4V	TGCA	9 cut(s)	107, 135, 145, 152, 485, 497, 506, 536, 548
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 86, 290, 494, 503
HpyF3I	CTNAG	4 cut(s)	60, 168, 275, 591
Hsp92II	CATG	3 cut(s)	540, 823, 896
HspAI	GCGC	3 cut(s)	78, 87, 303
Kzo9I	GATC	1 cut(s)	173
LmnI	GCTCC	1 cut(s)	440
LpnPI	CCDG	7 cut(s)	94, 414, 478, 603, 669, 690, 750
Lsp1109I	GCAGC	5 cut(s)	28, 71, 101, 469, 497
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	741
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MboII	GAAGA	4 cut(s)	356, 400, 788, 835
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	4 cut(s)	348, 576, 779, 914
MlyI	GAGTC	4 cut(s)	43, 221, 251, 874
MmeI	TCCRAC	2 cut(s)	219, 403
MnlI	CCTC	5 cut(s)	283, 388, 541, 586, 841
MseI	TTAA	2 cut(s)	72, 612
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	1 cut(s)	466
MvnI	CGCG	1 cut(s)	602
MwoI	GCNNNNNNNGC	5 cut(s)	84, 86, 290, 494, 503
NciI	CCSGG	1 cut(s)	466
NdeII	GATC	1 cut(s)	173
NlaIII	CATG	3 cut(s)	540, 823, 896
NlaIV	GGNNCC	3 cut(s)	588, 642, 723
NmuCI	GTSAC	1 cut(s)	434
NruI	TCGCGA	1 cut(s)	602
NsbI	TGCGCA	1 cut(s)	88
NspI	RCATGY	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	733
PkrI	GCNGC	5 cut(s)	18, 86, 91, 484, 487
PleI	GAGTC	4 cut(s)	43, 220, 250, 873
PpsI	GAGTC	4 cut(s)	43, 220, 250, 873
PpuMI	RGGWCCY	1 cut(s)	722
Psp5II	RGGWCCY	1 cut(s)	722
PspN4I	GGNNCC	3 cut(s)	588, 642, 723
PspPI	GGNCC	2 cut(s)	586, 722
PspPPI	RGGWCCY	1 cut(s)	722
PstI	CTGCAG	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	81
RruI	TCGCGA	1 cut(s)	602
SaqAI	TTAA	2 cut(s)	72, 612
SatI	GCNGC	5 cut(s)	17, 85, 90, 483, 486
Sau3AI	GATC	1 cut(s)	173
Sau96I	GGNCC	2 cut(s)	586, 722
SchI	GAGTC	4 cut(s)	43, 221, 251, 874
ScrFI	CCNGG	1 cut(s)	466
SduI	GDGCHC	1 cut(s)	154
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	2 cut(s)	586, 722
Sse9I	AATT	4 cut(s)	348, 576, 779, 914
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	1 cut(s)	741
StyD4I	CCNGG	1 cut(s)	464
StyI	CCWWGG	1 cut(s)	871
TaaI	ACNGT	5 cut(s)	156, 163, 383, 451, 706
TasI	AATT	4 cut(s)	348, 576, 779, 914
TfiI	GAWTC	1 cut(s)	733
Tru1I	TTAA	2 cut(s)	72, 612
Tru9I	TTAA	2 cut(s)	72, 612
TscAI	CASTG	3 cut(s)	12, 142, 166
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	5 cut(s)	16, 84, 89, 482, 485
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	7 cut(s)	33, 183, 249, 357, 630, 677, 836
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	3 cut(s)	12, 142, 166
VneI	GTGCAC	1 cut(s)	150
VpaK11BI	GGWCC	2 cut(s)	586, 722
XceI	RCATGY	1 cut(s)	540
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	768
XspI	CTAG	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.