Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002911

Physical Location & Seq

Genomic Coordinates Forward (+)

10820059 .. 10823798

Gene Structure 3740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G011510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCAGTGTCAACGCCGCAGCTTCACTCACTTACCAGTCTTGCTTCATTGACTCACCGCACTAAGGTCAAGTTTAACAGCGCCTGCTGCACAGCTCTGTTTCCCAATGCAAAGCAAACAAGCCCATCCACGCTTTGCAGTGCTGTGCAGAGTGCACAGTCCACTGTTTCTGAGAGATCAAACCCACCATTTACTTCCTTCAATGAGTTGATTGAGTCCTTGATTGATAAGGTGGATTTGTCGGAGTCCGAAGCCGAAGCTTCATTGGAGTTCTTGCTGAGTGATGCTAGTGAGGCTTTGATTAGCGCCTTTCTTGTGTTGTTGAGAGCCAAAGGAGAGACTTATGAAGAAATTGTGGGATTAGCAAAGGCAATGATAAAGCACAGTTTGAAGATTGAGGGCTTGGATGACGCAGTTGACATTGTTGGAACTGGTGGTGACGGAGCAAACACAGTAAACATTTCAACCGGCGCTTCAATACTTGCTGCAGCCTGTGGTGCAAAAGTTGCAAAGCAAGGTAATCGTTCAAGTTCCTCTGCATGTGGAAGTGCAGATGTATTGGAAGCTTTGGGAATAATAATTGACTTGGACCCTGAGGGGGTCGCAAGATGTGTTAATGAAGTAGGCATTGGTTTTATGATGGCACCAAAGTATCATCCAGCAATGAATGTCGTTCGTCCTGTAAGGAAAAAGCTAAAAGTAAAGACTGTATTCAACATTTTGGGACCTATGTTGAATCCAGCTAGAGTTCCTTTTGCTGTTGTTGGTGTATACAAGGAAGAATTAGTCTTAAAGATGGCTAAAGCATTACAAAGCTTTGGCATGAAGAGAGCATTGGTTGTTCACTCGGAGGGCTTGGACGAAATGAGTCCCCTCGGACCTGGACATATCCTTAATGTGACTCCTGATAAGATTGAGAAGTTCTCCTTTGATCCATTGGATTTTGGAATTCCTCGATGCACTGTAGATGATTTGCGAGGTGGAGATCCAGAGTATAACGCTGAGGCATTAAGGCGTGTATTATCAGGAGAGAAAGGTTCCATCGCAGATGCGTTTATCCTAAATGCAGCAGCAACTCTTTTAGTCAGCGGCCGTGTAAACACTTTGGCTGAAGGAGTTTCTTTGGCTCGTGAGACACAGCTTTCAGGAAAAGCCATCAAGACGCTTGATCAATGGGTATCTCTCTCGAATACAATGAGGAAAGATACAATTATTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004048 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0031967 GO:0031975 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Glycos_trans_3N Glycos_transf_3

Protein Analysis

406

Amino Acids

43.12

Weight (kDa)

5.96

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_trans_3N	PF02885	69 - 128	7.5e-16	Glycosyl transferase family, helical bundle domain
Glycos_transf_3	PF00591	136 - 385	1.9e-98	Glycosyl transferase family, a/b domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17990
fragaria_vesca	FvH4_5g05490
malus_domestica	MD06G1172000.v1.1 MD14G1177900.v1.1
prunus_persica	Prupe.5G171400_v2.0.a1
pyrus_communis	pycom06g15320 pycom14g14840
rosa_chinensis	RchiOBHm_Chr6g0263061 RchiOBHm_Chr6g0263071 RchiOBHm_Chr6g0263081 RchiOBHm_Chr7g0193331
rosa_laevigata	RLG00000004279 RLG00000014377 RLG00000014379 RLG00000014380 RLG00000014381 RLG00000014382 RLG00000020372
rosa_multiflora	Rmu_sc0013034.1_g000001 Rmu_ssc0000092.1_g000010
rosa_roxburghii	Rroxscaffold_3G00262210 Rroxscaffold_7G00204720 Rroxscaffold_7G00204730 Rroxscaffold_7G00204770
rosa_rugosa	Rorug06G0003300 Rorug06G0003400 Rorug07G0008900
rosa_samantha	Rh6BG115300 Rh6BG116400 Rh6BG116500 Rh6CG114000 Rh6CG114800 Rh7AG134700 Rh7CG138800 Rh7DG136800
rosa_wichuraiana	Rw6G010480 Rw6G010510 Rw7G011510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	643
AccI	GTMKAC	1 cut(s)	771
AciI	CCGC	3 cut(s)	17, 58, 1089
AclWI	GGATC	2 cut(s)	926, 980
AcoI	YGGCCR	1 cut(s)	1090
AcsI	RAATTY	1 cut(s)	948
AcuI	CTGAAG	1 cut(s)	1131
AfiI	CCNNNNNNNGG	2 cut(s)	64, 598
AgsI	TTSAA	7 cut(s)	202, 391, 465, 477, 528, 715, 736
AjnI	CCWGG	1 cut(s)	880
AjuI	GAANNNNNNNTTGG	4 cut(s)	612, 644, 818, 850
AluBI	AGCT	8 cut(s)	22, 95, 260, 566, 694, 743, 816, 1141
AluI	AGCT	8 cut(s)	22, 95, 260, 566, 694, 743, 816, 1141
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	2 cut(s)	332, 1127
Alw44I	GTGCAC	1 cut(s)	153
AlwI	GGATC	2 cut(s)	926, 980
AlwNI	CAGNNNCTG	1 cut(s)	84
AoxI	GGCC	1 cut(s)	1090
ApaLI	GTGCAC	1 cut(s)	153
ApeKI	GCWGC	6 cut(s)	19, 87, 485, 488, 1067, 1070
ApoI	RAATTY	1 cut(s)	948
AspLEI	GCGC	3 cut(s)	83, 308, 473
AspS9I	GGNCC	3 cut(s)	589, 725, 878
AsuHPI	GGTGA	2 cut(s)	47, 449
AvaII	GGWCC	3 cut(s)	589, 725, 878
AxyI	CCTNAGG	1 cut(s)	594
BaeGI	GKGCMC	1 cut(s)	157
BaeI	ACNNNNGTAYC	2 cut(s)	635, 668
BanI	GGYRCC	1 cut(s)	643
BauI	CACGAG	1 cut(s)	1128
Bbv12I	GWGCWC	1 cut(s)	157
BbvCI	CCTCAGC	1 cut(s)	1002
BbvI	GCAGC	6 cut(s)	31, 74, 472, 500, 1079, 1082
BccI	CCATC	5 cut(s)	133, 634, 790, 1049, 1163
BceAI	ACGGC	1 cut(s)	1077
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BciT130I	CCWGG	1 cut(s)	882
BclI	TGATCA	1 cut(s)	1168
BcoDI	GTCTC	2 cut(s)	332, 1127
BfaI	CTAG	2 cut(s)	288, 744
BfmI	CTRYAG	2 cut(s)	486, 963
BfoI	RGCGCY	3 cut(s)	84, 309, 474
BisI	GCNGC	8 cut(s)	17, 20, 88, 486, 489, 1068, 1071, 1090
BlsI	GCNGC	8 cut(s)	18, 21, 89, 487, 490, 1069, 1072, 1091
Bme1390I	CCNGG	1 cut(s)	882
Bme18I	GGWCC	3 cut(s)	589, 725, 878
BmgT120I	GGNCC	3 cut(s)	589, 725, 878
BmiI	GGNNCC	4 cut(s)	591, 645, 726, 1039
BmrFI	CCNGG	1 cut(s)	882
BmsI	GCATC	3 cut(s)	274, 947, 1039
BplI	GAGNNNNNCTC	2 cut(s)	908, 940
Bpu10I	CCTNAGC	1 cut(s)	1002
BsaJI	CCNNGG	1 cut(s)	874
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 598
Bse118I	RCCGGY	1 cut(s)	467
Bse1I	ACTGG	2 cut(s)	36, 436
Bse21I	CCTNAGG	1 cut(s)	594
Bse3DI	GCAATG	2 cut(s)	378, 669
BseBI	CCWGG	1 cut(s)	882
BseDI	CCNNGG	1 cut(s)	874
BseGI	GGATG	3 cut(s)	125, 412, 655
BseLI	CCNNNNNNNGG	2 cut(s)	64, 598
BseMI	GCAATG	2 cut(s)	378, 669
BseMII	CTCAG	4 cut(s)	162, 269, 585, 993
BseNI	ACTGG	2 cut(s)	36, 436
BseSI	GKGCMC	1 cut(s)	157
BseX3I	CGGCCG	1 cut(s)	1090
BseXI	GCAGC	6 cut(s)	31, 74, 472, 500, 1079, 1082
BsgI	GTGCAG	3 cut(s)	73, 167, 570
Bsh1285I	CGRYCG	1 cut(s)	1093
BshFI	GGCC	1 cut(s)	1092
BshNI	GGYRCC	1 cut(s)	643
BsiEI	CGRYCG	1 cut(s)	1093
BsiHKAI	GWGCWC	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	468
BslFI	GGGAC	2 cut(s)	738, 855
BslI	CCNNNNNNNGG	2 cut(s)	64, 598
BsmAI	GTCTC	2 cut(s)	332, 1127
BsmFI	GGGAC	2 cut(s)	738, 855
BsnI	GGCC	1 cut(s)	1092
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	4 cut(s)	176, 931, 985, 1168
BspACI	CCGC	3 cut(s)	17, 58, 1089
BspANI	GGCC	1 cut(s)	1092
BspCNI	CTCAG	4 cut(s)	163, 270, 586, 994
BspLI	GGNNCC	4 cut(s)	591, 645, 726, 1039
BspMAI	CTGCAG	1 cut(s)	490
BspPI	GGATC	2 cut(s)	926, 980
BspT107I	GGYRCC	1 cut(s)	643
BsrDI	GCAATG	2 cut(s)	378, 669
BsrFI	RCCGGY	1 cut(s)	467
BsrI	ACTGG	2 cut(s)	36, 436
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	1 cut(s)	874
BssMI	GATC	4 cut(s)	176, 931, 985, 1168
BssNAI	GTATAC	1 cut(s)	772
BssSI	CACGAG	1 cut(s)	1128
Bst1107I	GTATAC	1 cut(s)	772
Bst2BI	CACGAG	1 cut(s)	1128
Bst2UI	CCWGG	1 cut(s)	882
Bst4CI	ACNGT	6 cut(s)	159, 166, 386, 454, 709, 964
Bst6I	CTCTTC	1 cut(s)	821
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	5 cut(s)	63, 171, 278, 594, 1002
BstF5I	GGATG	3 cut(s)	125, 412, 655
BstH2I	RGCGCY	3 cut(s)	84, 309, 474
BstHHI	GCGC	3 cut(s)	83, 308, 473
BstKTI	GATC	4 cut(s)	179, 934, 988, 1171
BstMAI	GTCTC	2 cut(s)	332, 1127
BstMBI	GATC	4 cut(s)	176, 931, 985, 1168
BstMCI	CGRYCG	1 cut(s)	1093
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 293, 497, 506
BstNI	CCWGG	1 cut(s)	882
BstNSI	RCATGY	1 cut(s)	543
BstSCI	CCNGG	1 cut(s)	880
BstSFI	CTRYAG	2 cut(s)	486, 963
BstSLI	GKGCMC	1 cut(s)	157
BstV1I	GCAGC	6 cut(s)	31, 74, 472, 500, 1079, 1082
BstX2I	RGATCY	1 cut(s)	985
BstYI	RGATCY	1 cut(s)	985
BstZ17I	GTATAC	1 cut(s)	772
BstZI	CGGCCG	1 cut(s)	1090
Bsu36I	CCTNAGG	1 cut(s)	594
BsuRI	GGCC	1 cut(s)	1092
BtgZI	GCGATG	1 cut(s)	1027
BtsCI	GGATG	3 cut(s)	125, 412, 655
BtsI	GCAGTG	2 cut(s)	12, 145
BtsIMutI	CAGTG	4 cut(s)	12, 145, 162, 960
Cac8I	GCNNGC	1 cut(s)	85
CaiI	CAGNNNCTG	1 cut(s)	84
CfoI	GCGC	3 cut(s)	83, 308, 473
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	3 cut(s)	589, 725, 878
CseI	GACGC	2 cut(s)	419, 1171
CviAII	CATG	2 cut(s)	540, 823
DdeI	CTNAG	5 cut(s)	63, 171, 278, 594, 1002
DpnI	GATC	4 cut(s)	178, 933, 987, 1170
DpnII	GATC	4 cut(s)	176, 931, 985, 1168
EaeI	YGGCCR	1 cut(s)	1090
EagI	CGGCCG	1 cut(s)	1090
Eam1104I	CTCTTC	1 cut(s)	821
EarI	CTCTTC	1 cut(s)	821
EclXI	CGGCCG	1 cut(s)	1090
Eco47I	GGWCC	3 cut(s)	589, 725, 878
Eco52I	CGGCCG	1 cut(s)	1090
Eco57I	CTGAAG	1 cut(s)	1131
Eco81I	CCTNAGG	1 cut(s)	594
EcoO109I	RGGNCCY	1 cut(s)	725
EcoRI	GAATTC	1 cut(s)	948
EcoRII	CCWGG	1 cut(s)	880
FaeI	CATG	2 cut(s)	543, 826
FaiI	YATR	8 cut(s)	345, 541, 638, 731, 772, 824, 888, 996
FalI	AAGNNNNNCTT	2 cut(s)	911, 943
FaqI	GGGAC	2 cut(s)	738, 855
FatI	CATG	2 cut(s)	539, 822
FbaI	TGATCA	1 cut(s)	1168
FblI	GTMKAC	1 cut(s)	771
Fnu4HI	GCNGC	8 cut(s)	17, 20, 88, 486, 489, 1068, 1071, 1090
FokI	GGATG	3 cut(s)	112, 419, 642
Fsp4HI	GCNGC	8 cut(s)	17, 20, 88, 486, 489, 1068, 1071, 1090
FspBI	CTAG	2 cut(s)	288, 744
GlaI	GCGC	3 cut(s)	82, 307, 472
GluI	GCNGC	8 cut(s)	17, 20, 88, 486, 489, 1068, 1071, 1090
HaeII	RGCGCY	3 cut(s)	84, 309, 474
HaeIII	GGCC	1 cut(s)	1092
HapII	CCGG	1 cut(s)	468
HgaI	GACGC	2 cut(s)	419, 1171
HhaI	GCGC	3 cut(s)	83, 308, 473
Hin1II	CATG	2 cut(s)	543, 826
Hin6I	GCGC	3 cut(s)	81, 306, 471
HinP1I	GCGC	3 cut(s)	81, 306, 471
HincII	GTYRAC	2 cut(s)	12, 418
HindII	GTYRAC	2 cut(s)	12, 418
HindIII	AAGCTT	3 cut(s)	258, 564, 814
HinfI	GANTC	6 cut(s)	52, 215, 245, 736, 868, 901
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	2 cut(s)	47, 449
Hpy166II	GTNNAC	8 cut(s)	12, 155, 162, 418, 457, 772, 844, 1099
Hpy188I	TCNGA	5 cut(s)	172, 244, 250, 850, 878
Hpy188III	TCNNGA	7 cut(s)	905, 989, 1026, 1130, 1146, 1159, 1186
Hpy8I	GTNNAC	8 cut(s)	12, 155, 162, 418, 457, 772, 844, 1099
HpyAV	CCTTC	2 cut(s)	208, 1106
HpyCH4III	ACNGT	6 cut(s)	159, 166, 386, 454, 709, 964
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 293, 497, 506
HpyF3I	CTNAG	5 cut(s)	63, 171, 278, 594, 1002
Hsp92II	CATG	2 cut(s)	543, 826
HspAI	GCGC	3 cut(s)	81, 306, 471
Ksp22I	TGATCA	1 cut(s)	1168
Kzo9I	GATC	4 cut(s)	176, 931, 985, 1168
LmnI	GCTCC	1 cut(s)	443
Lsp1109I	GCAGC	6 cut(s)	31, 74, 472, 500, 1079, 1082
LweI	GCATC	3 cut(s)	274, 947, 1039
MaeI	CTAG	2 cut(s)	288, 744
MaeIII	GTNAC	2 cut(s)	437, 898
MalI	GATC	4 cut(s)	178, 933, 987, 1170
MboI	GATC	4 cut(s)	176, 931, 985, 1168
MboII	GAAGA	4 cut(s)	359, 403, 791, 838
MflI	RGATCY	1 cut(s)	985
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	5 cut(s)	351, 579, 782, 948, 1209
MlyI	GAGTC	5 cut(s)	46, 224, 254, 877, 895
MmeI	TCCRAC	2 cut(s)	222, 406
MseI	TTAA	6 cut(s)	75, 615, 791, 894, 1010, 1219
MspA1I	CMGCKG	1 cut(s)	1089
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	1 cut(s)	882
MvaI	CCWGG	1 cut(s)	882
MwoI	GCNNNNNNNGC	4 cut(s)	87, 293, 497, 506
NdeII	GATC	4 cut(s)	176, 931, 985, 1168
NlaIII	CATG	2 cut(s)	543, 826
NlaIV	GGNNCC	4 cut(s)	591, 645, 726, 1039
NmuCI	GTSAC	2 cut(s)	437, 898
NspI	RCATGY	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	736
PkrI	GCNGC	8 cut(s)	18, 21, 89, 487, 490, 1069, 1072, 1091
PleI	GAGTC	5 cut(s)	46, 223, 253, 876, 895
PpsI	GAGTC	5 cut(s)	46, 223, 253, 876, 895
PpuMI	RGGWCCY	1 cut(s)	725
Psp5II	RGGWCCY	1 cut(s)	725
Psp6I	CCWGG	1 cut(s)	880
PspGI	CCWGG	1 cut(s)	880
PspN4I	GGNNCC	4 cut(s)	591, 645, 726, 1039
PspPI	GGNCC	3 cut(s)	589, 725, 878
PspPPI	RGGWCCY	1 cut(s)	725
PstI	CTGCAG	1 cut(s)	490
PstNI	CAGNNNCTG	1 cut(s)	84
PsuI	RGATCY	1 cut(s)	985
SaqAI	TTAA	6 cut(s)	75, 615, 791, 894, 1010, 1219
SatI	GCNGC	8 cut(s)	17, 20, 88, 486, 489, 1068, 1071, 1090
Sau3AI	GATC	4 cut(s)	176, 931, 985, 1168
Sau96I	GGNCC	3 cut(s)	589, 725, 878
SchI	GAGTC	5 cut(s)	46, 224, 254, 877, 895
ScrFI	CCNGG	1 cut(s)	882
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	3 cut(s)	274, 947, 1039
SfcI	CTRYAG	2 cut(s)	486, 963
SinI	GGWCC	3 cut(s)	589, 725, 878
Sse9I	AATT	5 cut(s)	351, 579, 782, 948, 1209
SsiI	CCGC	3 cut(s)	17, 58, 1089
SspMI	CTAG	2 cut(s)	288, 744
StyD4I	CCNGG	1 cut(s)	880
TaaI	ACNGT	6 cut(s)	159, 166, 386, 454, 709, 964
TaqI	TCGA	2 cut(s)	955, 1187
TasI	AATT	5 cut(s)	351, 579, 782, 948, 1209
TauI	GCSGC	2 cut(s)	19, 1092
TfiI	GAWTC	1 cut(s)	736
Tru1I	TTAA	6 cut(s)	75, 615, 791, 894, 1010, 1219
Tru9I	TTAA	6 cut(s)	75, 615, 791, 894, 1010, 1219
TscAI	CASTG	4 cut(s)	12, 145, 169, 967
TseFI	GTSAC	2 cut(s)	437, 898
TseI	GCWGC	6 cut(s)	19, 87, 485, 488, 1067, 1070
Tsp45I	GTSAC	2 cut(s)	437, 898
TspDTI	ATGAA	6 cut(s)	36, 252, 360, 633, 680, 839
TspGWI	ACGGA	1 cut(s)	456
TspRI	CASTG	4 cut(s)	12, 145, 169, 967
VneI	GTGCAC	1 cut(s)	153
VpaK11BI	GGWCC	3 cut(s)	589, 725, 878
XapI	RAATTY	1 cut(s)	948
XceI	RCATGY	1 cut(s)	543
XmiI	GTMKAC	1 cut(s)	771
XspI	CTAG	2 cut(s)	288, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.