Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002911

Physical Location & Seq

Genomic Coordinates Forward (+)

551909 .. 555881

Gene Structure 3973 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0003300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGATGCAGCTTTTGCGCGTCTTCTCCTCCTCCAGGAACCAGTTGTCAAAGGGAGCTGCTTTATCGTTGGATTCTTTTACACAAAGCACCAGCTTTTCAACTGCCAGGCAGAATTTTTCTGCTAAAGGAAGAATCGGTGATCAAGTATATGCTCCTTTTTCTATCTACAAAGGCAAAGCTGCACTCTCCTTGAGTCCTGTTCTCCCAACATTCACTAAATTGGAATCTGGAAGTGTTGTGGTTGAGCGACGTGGTTCCGTGATGTTAAAGTTCATGCCTGCAATTGGTGAGCGCAAATATGACTCGGAGAAGAAACAGTTGTTTGCTTTATCGGCAACAGAGGTTGGGTCTCTAATCAGCTTGGGTCCCAAAGATTCATGTGAATTATTTCATGATCCCTCTATGCAATCAAGTAATGCTGGTCAAGTGAGGAAGAGCTTATCAATCAAGCCTCATGCAGATGGCTATTTTATTTCTTTGACTGTTGTCAACAACCTACTGAAAACCAGAGAGAGTTTCTCAGTTCCTGTCACAACGGCTGAATTTGCTGTAATGAAGACTGCTTGCAGTTTTGCACTCCCCCACATCATGGGTTGGGATCGGTTGACAAATAAGGTGCCAAGAGGCATAGAAGTGCACAAATCAGAGATGGCGGAACCCCAACTTCTGGATGAATGGGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004048 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0031967 GO:0031975 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Glycos_trans_3N Glycos_transf_3

Protein Analysis

228

Amino Acids

25.15

Weight (kDa)

9.46

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Whirly	PF08536	55 - 187	7.5e-57	Whirly transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17990
fragaria_vesca	FvH4_5g05490
malus_domestica	MD06G1172000.v1.1 MD14G1177900.v1.1
prunus_persica	Prupe.5G171400_v2.0.a1
pyrus_communis	pycom06g15320 pycom14g14840
rosa_chinensis	RchiOBHm_Chr6g0263061 RchiOBHm_Chr6g0263071 RchiOBHm_Chr6g0263081 RchiOBHm_Chr7g0193331
rosa_laevigata	RLG00000004279 RLG00000014377 RLG00000014379 RLG00000014380 RLG00000014381 RLG00000014382 RLG00000020372
rosa_multiflora	Rmu_sc0013034.1_g000001 Rmu_ssc0000092.1_g000010
rosa_roxburghii	Rroxscaffold_3G00262210 Rroxscaffold_7G00204720 Rroxscaffold_7G00204730 Rroxscaffold_7G00204770
rosa_rugosa	Rorug06G0003300 Rorug06G0003400 Rorug07G0008900
rosa_samantha	Rh6BG115300 Rh6BG116400 Rh6BG116500 Rh6CG114000 Rh6CG114800 Rh7AG134700 Rh7CG138800 Rh7DG136800
rosa_wichuraiana	Rw6G010480 Rw6G010510 Rw7G011510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	616
AccB7I	CCANNNNNTGG	2 cut(s)	589, 667
AccII	CGCG	1 cut(s)	18
AciI	CCGC	1 cut(s)	653
AclWI	GGATC	2 cut(s)	389, 606
AcsI	RAATTY	2 cut(s)	112, 542
AfiI	CCNNNNNNNGG	4 cut(s)	33, 284, 589, 667
AgsI	TTSAA	1 cut(s)	99
AjiI	CACGTC	1 cut(s)	251
AjnI	CCWGG	2 cut(s)	32, 104
AluBI	AGCT	6 cut(s)	10, 56, 93, 179, 360, 438
AluI	AGCT	6 cut(s)	10, 56, 93, 179, 360, 438
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	1 cut(s)	354
Alw44I	GTGCAC	1 cut(s)	635
AlwI	GGATC	2 cut(s)	389, 606
AlwNI	CAGNNNCTG	1 cut(s)	527
ApaLI	GTGCAC	1 cut(s)	635
ApeKI	GCWGC	3 cut(s)	7, 56, 179
ApoI	RAATTY	2 cut(s)	112, 542
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	2 cut(s)	18, 294
AspS9I	GGNCC	1 cut(s)	365
AsuHPI	GGTGA	2 cut(s)	149, 299
AvaII	GGWCC	1 cut(s)	365
BaeGI	GKGCMC	1 cut(s)	639
BanI	GGYRCC	1 cut(s)	616
BbsI	GAAGAC	2 cut(s)	13, 563
Bbv12I	GWGCWC	1 cut(s)	639
BbvI	GCAGC	3 cut(s)	19, 43, 166
BccI	CCATC	2 cut(s)	455, 643
BceAI	ACGGC	1 cut(s)	552
BciT130I	CCWGG	2 cut(s)	34, 106
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	354
BisI	GCNGC	3 cut(s)	8, 57, 180
BlsI	GCNGC	3 cut(s)	9, 58, 181
Bme1390I	CCNGG	2 cut(s)	34, 106
Bme18I	GGWCC	1 cut(s)	365
BmgBI	CACGTC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	6 cut(s)	38, 256, 366, 367, 618, 657
BmrFI	CCNGG	2 cut(s)	34, 106
BoxI	GACNNNNGTC	1 cut(s)	485
BpiI	GAAGAC	2 cut(s)	13, 563
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
BpmI	CTGGAG	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	4 cut(s)	33, 284, 589, 667
Bse1I	ACTGG	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	34, 106
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	4 cut(s)	33, 284, 589, 667
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	2 cut(s)	16, 19
BseSI	GKGCMC	1 cut(s)	639
BseXI	GCAGC	3 cut(s)	19, 43, 166
BsgI	GTGCAG	1 cut(s)	165
Bsh1236I	CGCG	1 cut(s)	18
BshNI	GGYRCC	1 cut(s)	616
BsiHKAI	GWGCWC	1 cut(s)	639
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	4 cut(s)	33, 284, 589, 667
BsmAI	GTCTC	1 cut(s)	354
BsmFI	GGGAC	1 cut(s)	351
Bso31I	GGTCTC	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp143I	GATC	3 cut(s)	139, 394, 598
BspACI	CCGC	1 cut(s)	653
BspCNI	CTCAG	1 cut(s)	533
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	6 cut(s)	38, 256, 366, 367, 618, 657
BspPI	GGATC	2 cut(s)	389, 606
BspQI	GCTCTTC	1 cut(s)	428
BspT107I	GGYRCC	1 cut(s)	616
BspTNI	GGTCTC	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	40
BssMI	GATC	3 cut(s)	139, 394, 598
Bst2UI	CCWGG	2 cut(s)	34, 106
Bst4CI	ACNGT	2 cut(s)	318, 484
Bst6I	CTCTTC	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	279, 565
BstDEI	CTNAG	1 cut(s)	520
BstENI	CCTNNNNNAGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	676
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	18, 294
BstKTI	GATC	3 cut(s)	142, 397, 601
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	3 cut(s)	139, 394, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 332, 545
BstNI	CCWGG	2 cut(s)	34, 106
BstPAI	GACNNNNGTC	1 cut(s)	485
BstSCI	CCNGG	2 cut(s)	32, 104
BstSLI	GKGCMC	1 cut(s)	639
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	3 cut(s)	19, 43, 166
BstV2I	GAAGAC	2 cut(s)	13, 563
BtrI	CACGTC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	676
Cac8I	GCNNGC	2 cut(s)	279, 565
CaiI	CAGNNNCTG	1 cut(s)	527
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	2 cut(s)	18, 294
Cfr13I	GGNCC	1 cut(s)	365
CseI	GACGC	1 cut(s)	7
CviAII	CATG	5 cut(s)	274, 378, 392, 455, 589
CviJI	RGCY	9 cut(s)	10, 56, 93, 179, 360, 438, 451, 465, 539
CviKI_1	RGCY	9 cut(s)	10, 56, 93, 179, 360, 438, 451, 465, 539
DdeI	CTNAG	1 cut(s)	520
DpnI	GATC	3 cut(s)	141, 396, 600
DpnII	GATC	3 cut(s)	139, 394, 598
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
EciI	GGCGGA	1 cut(s)	668
Eco31I	GGTCTC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	365
EcoNI	CCTNNNNNAGG	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	32, 104
FaeI	CATG	5 cut(s)	277, 381, 395, 458, 592
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	5 cut(s)	273, 377, 391, 454, 588
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	3 cut(s)	8, 57, 180
FokI	GGATG	1 cut(s)	683
Fsp4HI	GCNGC	3 cut(s)	8, 57, 180
GlaI	GCGC	2 cut(s)	17, 293
GluI	GCNGC	3 cut(s)	8, 57, 180
GsuI	CTGGAG	1 cut(s)	16
HgaI	GACGC	1 cut(s)	7
HhaI	GCGC	2 cut(s)	18, 294
Hin1II	CATG	5 cut(s)	277, 381, 395, 458, 592
Hin6I	GCGC	2 cut(s)	16, 292
HinP1I	GCGC	2 cut(s)	16, 292
HincII	GTYRAC	2 cut(s)	490, 606
HindII	GTYRAC	2 cut(s)	490, 606
HinfI	GANTC	6 cut(s)	71, 132, 193, 224, 302, 374
HphI	GGTGA	2 cut(s)	149, 299
Hpy166II	GTNNAC	3 cut(s)	490, 606, 637
Hpy188I	TCNGA	2 cut(s)	307, 646
Hpy188III	TCNNGA	3 cut(s)	228, 392, 668
Hpy8I	GTNNAC	3 cut(s)	490, 606, 637
Hpy99I	CGWCG	1 cut(s)	252
HpyCH4III	ACNGT	2 cut(s)	318, 484
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	8 cut(s)	7, 182, 281, 406, 458, 567, 575, 637
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 332, 545
HpyF3I	CTNAG	1 cut(s)	520
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	5 cut(s)	277, 381, 395, 458, 592
HspAI	GCGC	2 cut(s)	16, 292
KflI	GGGWCCC	1 cut(s)	365
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	139, 394, 598
LguI	GCTCTTC	1 cut(s)	428
LmnI	GCTCC	2 cut(s)	53, 157
Lsp1109I	GCAGC	3 cut(s)	19, 43, 166
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	3 cut(s)	141, 396, 600
MboI	GATC	3 cut(s)	139, 394, 598
MboII	GAAGA	5 cut(s)	13, 141, 322, 445, 568
MfeI	CAATTG	1 cut(s)	282
MhlI	GDGCHC	1 cut(s)	639
MluCI	AATT	5 cut(s)	112, 218, 282, 383, 542
MlyI	GAGTC	2 cut(s)	202, 296
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	7 cut(s)	37, 40, 334, 409, 423, 462, 617
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	1 cut(s)	266
MslI	CAYNNNNRTG	2 cut(s)	459, 632
MspR9I	CCNGG	2 cut(s)	34, 106
MunI	CAATTG	1 cut(s)	282
MvaI	CCWGG	2 cut(s)	34, 106
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	13, 332, 545
NdeII	GATC	3 cut(s)	139, 394, 598
NlaIII	CATG	5 cut(s)	277, 381, 395, 458, 592
NlaIV	GGNNCC	6 cut(s)	38, 256, 366, 367, 618, 657
NmuCI	GTSAC	1 cut(s)	529
PagI	TCATGA	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	428
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	4 cut(s)	71, 132, 224, 374
PflMI	CCANNNNNTGG	2 cut(s)	589, 667
PfoI	TCCNGGA	1 cut(s)	32
PkrI	GCNGC	3 cut(s)	9, 58, 181
PleI	GAGTC	2 cut(s)	201, 296
PpsI	GAGTC	2 cut(s)	201, 296
PpuMI	RGGWCCY	1 cut(s)	365
PshAI	GACNNNNGTC	1 cut(s)	485
Psp5II	RGGWCCY	1 cut(s)	365
Psp6I	CCWGG	2 cut(s)	32, 104
PspGI	CCWGG	2 cut(s)	32, 104
PspN4I	GGNNCC	6 cut(s)	38, 256, 366, 367, 618, 657
PspPI	GGNCC	1 cut(s)	365
PspPPI	RGGWCCY	1 cut(s)	365
PstNI	CAGNNNCTG	1 cut(s)	527
RseI	CAYNNNNRTG	2 cut(s)	459, 632
SapI	GCTCTTC	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	3 cut(s)	8, 57, 180
Sau3AI	GATC	3 cut(s)	139, 394, 598
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	2 cut(s)	202, 296
ScrFI	CCNGG	2 cut(s)	34, 106
SduI	GDGCHC	1 cut(s)	639
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	2 cut(s)	459, 632
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	5 cut(s)	112, 218, 282, 383, 542
SsiI	CCGC	1 cut(s)	653
StyD4I	CCNGG	2 cut(s)	32, 104
TaaI	ACNGT	2 cut(s)	318, 484
TaiI	ACGT	1 cut(s)	253
TasI	AATT	5 cut(s)	112, 218, 282, 383, 542
TfiI	GAWTC	4 cut(s)	71, 132, 224, 374
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	3 cut(s)	7, 56, 179
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	5 cut(s)	262, 366, 380, 569, 687
TspGWI	ACGGA	1 cut(s)	247
Van91I	CCANNNNNTGG	2 cut(s)	589, 667
VneI	GTGCAC	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	365
XagI	CCTNNNNNAGG	1 cut(s)	31
XapI	RAATTY	2 cut(s)	112, 542
XmnI	GAANNNNTTC	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.