Prupe.5G173800_v2.0.a1

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011713
Physical Location & Seq
Forward (+)
14827131 .. 14829898
2768 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G173800.2

Sequence Viewer

Length: 936 bp
ATGCAGGCTGCTTCAGGTCCATTAATCTCACTCTCTCCCAGCTTCAACACCTACTCTTCCTCCGACCGACTCGCTCAGATCGCCGCCCGAGTTGTCAGCGAGTTAACCTTTCAAGATCATCAACTCACCCACGATGAGCCCGACTGGGAGAGTTTGTACGCTACTCATCATCTTGAAGAAGAACAAGAACAAGTAACACAACAACAACAACAACAACACCGACAACCCCAAAACGACGGCGTACATGAAGAGGCGGAGCAGGAGGAAGAGGAGTTTGAGTTTGCTTTTGTCGGCAGAGACGCACACACGTCGCCCATCTCTGCTGACGAGATTTTCTCCAACGGTCAGATCAGGCCCGTCTACCCGCTCTTCGACCAAGGCTTATTAAAAGAGCACAACGACGTCGTGTCTCCTAAAAACGTTAACGGCGATGCGGACGCAGTTAATAAGAAGAACTCCGAGGCAGTTACGACGCCGAAGCAACGTCGTTTGCCGCTCAGAATGCTCATGATCGAAGAGGAGCGCGAAACGGCATCGTGCTCGTCCTCCGAGGCCGACGACCTCGAGAACCTGCCACCTGGCACCTACTGCGTGTGGACCCCTCCGAAGACCAAGAGCAGCTCCGCTGGCTCGTCGAAGCGCTGGAAGTTTCGGGACCTTCTTTATCGTAGCAGCAGCGACGGCAAGGAGACTTTCATGTTTCTGGCTCCGTCGTCGACCAAGAGAGCCGACAACAAGAACAACAACAAGGACGACGTCGTCTCCAAGAAAAGAGTCGGCGGCGGCGGCGTGTCGCAGAATGAGGAGCGTTTTGTCGTGAGGAGCAAAGCCGCGGAGGAAGGAGATAAACGACGGTCGTTTTTACCGTACAGGCAGGACTTTGTGGGGTTCTTCTCTAACGTGAATGGGCTTAGCAGGAATTTGCATCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

312

Amino Acids

35.13

Weight (kDa)

5.31

Isoelectric Point (pI)

67.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011713)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62770
fragaria_vesca FvH4_5g05310
malus_domestica MD14G1180400.v1.1
prunus_persica Prupe.5G173800_v2.0.a1 Prupe.5G173800_v2.0.a1
pyrus_communis pycom06g15510 pycom14g15040
rosa_chinensis RchiOBHm_Chr7g0193551
rosa_laevigata RLG00000004263
rosa_multiflora Rmu_sc0000282.1_g000001 Rmu_sc0041282.1_g000001 Rmu_ssc0000035.1_g000002
rosa_roxburghii Rroxscaffold_3G00262010
rosa_rugosa Rorug07G0010200
rosa_samantha Rh7AG137000 Rh7BG137300 Rh7CG140600 Rh7DG138400
rosa_wichuraiana Rw7G011670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 758
AatII GACGTC 2 cut(s) 405, 759
Acc36I ACCTGC 1 cut(s) 579
AccB1I GGYRCC 1 cut(s) 581
AccBSI CCGCTC 2 cut(s) 367, 496
AccI GTMKAC 2 cut(s) 360, 716
AccII CGCG 2 cut(s) 525, 833
AclI AACGTT 1 cut(s) 420
AcsI RAATTY 1 cut(s) 919
AcyI GRCGYC 3 cut(s) 402, 473, 756
AfaI GTAC 3 cut(s) 158, 243, 869
AfeI AGCGCT 1 cut(s) 641
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 3 cut(s) 46, 113, 176
AhdI GACNNNNNGTC 1 cut(s) 406
AjiI CACGTC 1 cut(s) 309
AjnI CCWGG 1 cut(s) 577
AluBI AGCT 2 cut(s) 42, 621
AluI AGCT 2 cut(s) 42, 621
Alw21I GWGCWC 2 cut(s) 396, 542
Alw26I GTCTC 4 cut(s) 291, 414, 683, 766
Ama87I CYCGRG 2 cut(s) 87, 563
Aor51HI AGCGCT 1 cut(s) 641
AoxI GGCC 2 cut(s) 353, 552
ApeKI GCWGC 4 cut(s) 8, 618, 672, 675
ApoI RAATTY 1 cut(s) 919
AseI ATTAAT 1 cut(s) 23
AspLEI GCGC 2 cut(s) 525, 642
AspS9I GGNCC 4 cut(s) 17, 354, 597, 655
AsuHPI GGTGA 1 cut(s) 118
AvaI CYCGRG 2 cut(s) 87, 563
AvaII GGWCC 3 cut(s) 17, 597, 655
BanI GGYRCC 1 cut(s) 581
BanII GRGCYC 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 614
Bbv12I GWGCWC 2 cut(s) 396, 542
BbvI GCAGC 3 cut(s) 630, 684, 687
BccI CCATC 1 cut(s) 323
BceAI ACGGC 4 cut(s) 253, 442, 546, 697
BcgI CGANNNNNNTGC 4 cut(s) 291, 325, 522, 556
BciT130I CCWGG 1 cut(s) 579
BcoDI GTCTC 4 cut(s) 291, 414, 683, 766
BfoI RGCGCY 1 cut(s) 643
BfuAI ACCTGC 1 cut(s) 579
BlpI GCTNAGC 1 cut(s) 911
Bme1390I CCNGG 1 cut(s) 579
Bme18I GGWCC 3 cut(s) 17, 597, 655
BmeRI GACNNNNNGTC 1 cut(s) 406
BmeT110I CYCGRG 2 cut(s) 87, 563
BmgBI CACGTC 1 cut(s) 309
BmgT120I GGNCC 4 cut(s) 17, 354, 597, 655
BmiI GGNNCC 4 cut(s) 583, 599, 656, 708
BmrFI CCNGG 1 cut(s) 579
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 2 cut(s) 421, 542
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 614
BplI GAGNNNNNCTC 2 cut(s) 320, 352
Bpu1102I GCTNAGC 1 cut(s) 911
BsaHI GRCGYC 3 cut(s) 402, 473, 756
BsaJI CCNNGG 4 cut(s) 376, 459, 549, 831
BsaXI ACNNNNNCTCC 8 cut(s) 44, 74, 140, 170, 263, 293, 746, 776
Bse1I ACTGG 1 cut(s) 149
BseBI CCWGG 1 cut(s) 579
BseDI CCNNGG 4 cut(s) 376, 459, 549, 831
BseGI GGATG 1 cut(s) 925
BseMII CTCAG 2 cut(s) 89, 511
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 4 cut(s) 284, 533, 818, 835
BseXI GCAGC 3 cut(s) 630, 684, 687
BseYI CCCAGC 1 cut(s) 38
Bsh1236I CGCG 2 cut(s) 525, 833
Bsh1285I CGRYCG 2 cut(s) 67, 857
BshFI GGCC 2 cut(s) 355, 554
BshNI GGYRCC 1 cut(s) 581
BsiEI CGRYCG 2 cut(s) 67, 857
BsiHKAI GWGCWC 2 cut(s) 396, 542
BsiHKCI CYCGRG 2 cut(s) 87, 563
BslFI GGGAC 1 cut(s) 668
BsmAI GTCTC 4 cut(s) 291, 414, 683, 766
BsmBI CGTCTC 2 cut(s) 291, 766
BsmFI GGGAC 1 cut(s) 668
BsmI GAATGC 1 cut(s) 507
BsnI GGCC 2 cut(s) 355, 554
BsoBI CYCGRG 2 cut(s) 87, 563
Bsp1286I GDGCHC 3 cut(s) 141, 396, 542
Bsp143I GATC 4 cut(s) 78, 115, 348, 510
Bsp1720I GCTNAGC 1 cut(s) 911
BspANI GGCC 2 cut(s) 355, 554
BspCNI CTCAG 2 cut(s) 88, 510
BspFNI CGCG 2 cut(s) 525, 833
BspHI TCATGA 1 cut(s) 507
BspLI GGNNCC 4 cut(s) 583, 599, 656, 708
BspMI ACCTGC 1 cut(s) 579
BspQI GCTCTTC 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 581
BsrBI CCGCTC 2 cut(s) 367, 496
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 4 cut(s) 376, 459, 549, 831
BssMI GATC 4 cut(s) 78, 115, 348, 510
BssNI GRCGYC 3 cut(s) 402, 473, 756
BssT1I CCWWGG 1 cut(s) 376
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 3 cut(s) 344, 855, 867
Bst6I CTCTTC 5 cut(s) 61, 243, 261, 374, 510
BstACI GRCGYC 3 cut(s) 402, 473, 756
BstAPI GCANNNNNTGC 1 cut(s) 588
BstC8I GCNNGC 2 cut(s) 6, 628
BstDEI CTNAG 3 cut(s) 75, 497, 911
BstDSI CCRYGG 1 cut(s) 831
BstF5I GGATG 1 cut(s) 925
BstFNI CGCG 2 cut(s) 525, 833
BstH2I RGCGCY 1 cut(s) 643
BstHHI GCGC 2 cut(s) 525, 642
BstKTI GATC 4 cut(s) 81, 118, 351, 513
BstMAI GTCTC 4 cut(s) 291, 414, 683, 766
BstMBI GATC 4 cut(s) 78, 115, 348, 510
BstMCI CGRYCG 2 cut(s) 67, 857
BstMWI GCNNNNNNNGC 6 cut(s) 80, 502, 588, 627, 681, 786
BstNI CCWGG 1 cut(s) 579
BstSCI CCNGG 1 cut(s) 577
BstUI CGCG 2 cut(s) 525, 833
BstV1I GCAGC 3 cut(s) 630, 684, 687
BstV2I GAAGAC 1 cut(s) 614
BsuRI GGCC 2 cut(s) 355, 554
BtgI CCRYGG 1 cut(s) 831
BtgZI GCGATG 1 cut(s) 444
BtrI CACGTC 1 cut(s) 309
BtsCI GGATG 1 cut(s) 925
BveI ACCTGC 1 cut(s) 579
Cac8I GCNNGC 2 cut(s) 6, 628
CciI TCATGA 1 cut(s) 507
CfoI GCGC 2 cut(s) 525, 642
Cfr13I GGNCC 4 cut(s) 17, 354, 597, 655
Cfr42I CCGCGG 1 cut(s) 834
CseI GACGC 3 cut(s) 308, 446, 481
Csp6I GTAC 3 cut(s) 157, 242, 868
CviAII CATG 3 cut(s) 245, 508, 697
CviQI GTAC 3 cut(s) 157, 242, 868
DdeI CTNAG 3 cut(s) 75, 497, 911
DpnI GATC 4 cut(s) 80, 117, 350, 512
DpnII GATC 4 cut(s) 78, 115, 348, 510
DrdI GACNNNNNNGTC 1 cut(s) 758
DriI GACNNNNNGTC 1 cut(s) 406
DseDI GACNNNNNNGTC 1 cut(s) 758
Eam1104I CTCTTC 5 cut(s) 61, 243, 261, 374, 510
Eam1105I GACNNNNNGTC 1 cut(s) 406
EarI CTCTTC 5 cut(s) 61, 243, 261, 374, 510
EciI GGCGGA 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 3 cut(s) 17, 597, 655
Eco47III AGCGCT 1 cut(s) 641
Eco88I CYCGRG 2 cut(s) 87, 563
EcoO109I RGGNCCY 1 cut(s) 655
EcoRII CCWGG 1 cut(s) 577
EcoT14I CCWWGG 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 376
Esp3I CGTCTC 2 cut(s) 291, 766
FaeI CATG 3 cut(s) 248, 511, 700
FaiI YATR 3 cut(s) 246, 509, 698
FaqI GGGAC 1 cut(s) 668
FatI CATG 3 cut(s) 244, 507, 696
FauI CCCGC 1 cut(s) 372
FblI GTMKAC 2 cut(s) 360, 716
FokI GGATG 1 cut(s) 912
FriOI GRGCYC 1 cut(s) 141
GlaI GCGC 2 cut(s) 524, 641
GsaI CCCAGC 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 643
HaeIII GGCC 2 cut(s) 355, 554
HgaI GACGC 3 cut(s) 308, 446, 481
HhaI GCGC 2 cut(s) 525, 642
Hin1I GRCGYC 3 cut(s) 402, 473, 756
Hin1II CATG 3 cut(s) 248, 511, 700
Hin6I GCGC 2 cut(s) 523, 640
HinP1I GCGC 2 cut(s) 523, 640
HincII GTYRAC 3 cut(s) 105, 424, 717
HindII GTYRAC 3 cut(s) 105, 424, 717
HinfI GANTC 2 cut(s) 69, 774
HpaI GTTAAC 2 cut(s) 105, 424
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 5 cut(s) 105, 361, 424, 597, 717
Hpy188I TCNGA 7 cut(s) 64, 78, 348, 460, 500, 550, 606
Hpy188III TCNNGA 6 cut(s) 113, 173, 508, 565, 653, 817
Hpy8I GTNNAC 5 cut(s) 105, 361, 424, 597, 717
HpyAV CCTTC 2 cut(s) 668, 833
HpyCH4III ACNGT 3 cut(s) 344, 855, 867
HpyCH4IV ACGT 6 cut(s) 308, 402, 420, 484, 756, 900
HpyCH4V TGCA 2 cut(s) 4, 925
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 502, 588, 627, 681, 786
HpyF3I CTNAG 3 cut(s) 75, 497, 911
HpySE526I ACGT 6 cut(s) 308, 402, 420, 484, 756, 900
Hsp92I GRCGYC 3 cut(s) 402, 473, 756
Hsp92II CATG 3 cut(s) 248, 511, 700
HspAI GCGC 2 cut(s) 523, 640
KspAI GTTAAC 2 cut(s) 105, 424
KspI CCGCGG 1 cut(s) 834
Kzo9I GATC 4 cut(s) 78, 115, 348, 510
LguI GCTCTTC 1 cut(s) 374
LmnI GCTCC 6 cut(s) 256, 520, 626, 712, 805, 822
Lsp1109I GCAGC 3 cut(s) 630, 684, 687
LweI GCATC 2 cut(s) 421, 542
MaeII ACGT 6 cut(s) 308, 402, 420, 484, 756, 900
MaeIII GTNAC 2 cut(s) 193, 466
MalI GATC 4 cut(s) 80, 117, 350, 512
MbiI CCGCTC 2 cut(s) 367, 496
MboI GATC 4 cut(s) 78, 115, 348, 510
MhlI GDGCHC 3 cut(s) 141, 396, 542
MluCI AATT 1 cut(s) 919
MlyI GAGTC 2 cut(s) 63, 783
MmeI TCCRAC 2 cut(s) 87, 363
MseI TTAA 5 cut(s) 23, 104, 386, 423, 444
MspA1I CMGCKG 2 cut(s) 626, 833
MspR9I CCNGG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 507
MvaI CCWGG 1 cut(s) 579
MvnI CGCG 2 cut(s) 525, 833
MwoI GCNNNNNNNGC 6 cut(s) 80, 502, 588, 627, 681, 786
NdeII GATC 4 cut(s) 78, 115, 348, 510
NlaIII CATG 3 cut(s) 248, 511, 700
NlaIV GGNNCC 4 cut(s) 583, 599, 656, 708
PaeR7I CTCGAG 1 cut(s) 563
PagI TCATGA 1 cut(s) 507
PciSI GCTCTTC 1 cut(s) 374
PcsI WCGNNNNNNNCGW 3 cut(s) 138, 426, 863
PctI GAATGC 1 cut(s) 507
PflFI GACNNNGTC 2 cut(s) 755, 758
PleI GAGTC 2 cut(s) 63, 782
PpsI GAGTC 2 cut(s) 63, 782
PpuMI RGGWCCY 1 cut(s) 655
PshBI ATTAAT 1 cut(s) 23
Psp1406I AACGTT 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 655
Psp6I CCWGG 1 cut(s) 577
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 1 cut(s) 577
PspN4I GGNNCC 4 cut(s) 583, 599, 656, 708
PspPI GGNCC 4 cut(s) 17, 354, 597, 655
PspPPI RGGWCCY 1 cut(s) 655
PsyI GACNNNGTC 2 cut(s) 755, 758
RsaI GTAC 3 cut(s) 158, 243, 869
RsaNI GTAC 3 cut(s) 157, 242, 868
SacII CCGCGG 1 cut(s) 834
SalI GTCGAC 1 cut(s) 715
SapI GCTCTTC 1 cut(s) 374
SaqAI TTAA 5 cut(s) 23, 104, 386, 423, 444
Sau3AI GATC 4 cut(s) 78, 115, 348, 510
Sau96I GGNCC 4 cut(s) 17, 354, 597, 655
SchI GAGTC 2 cut(s) 63, 783
ScrFI CCNGG 1 cut(s) 579
SduI GDGCHC 3 cut(s) 141, 396, 542
SfaNI GCATC 2 cut(s) 421, 542
Sfr274I CTCGAG 1 cut(s) 563
Sfr303I CCGCGG 1 cut(s) 834
SgrBI CCGCGG 1 cut(s) 834
SinI GGWCC 3 cut(s) 17, 597, 655
SlaI CTCGAG 1 cut(s) 563
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
Sse9I AATT 1 cut(s) 919
StyD4I CCNGG 1 cut(s) 577
StyI CCWWGG 1 cut(s) 376
TaaI ACNGT 3 cut(s) 344, 855, 867
TaiI ACGT 6 cut(s) 311, 405, 423, 487, 759, 903
TaqI TCGA 5 cut(s) 372, 513, 564, 635, 716
TaqII GACCGA 1 cut(s) 81
TasI AATT 1 cut(s) 919
TauI GCSGC 6 cut(s) 86, 496, 783, 786, 789, 833
Tru1I TTAA 5 cut(s) 23, 104, 386, 423, 444
Tru9I TTAA 5 cut(s) 23, 104, 386, 423, 444
TseI GCWGC 4 cut(s) 8, 618, 672, 675
TspDTI ATGAA 2 cut(s) 261, 685
TspGWI ACGGA 1 cut(s) 699
Tth111I GACNNNGTC 2 cut(s) 755, 758
VpaK11BI GGWCC 3 cut(s) 17, 597, 655
VspI ATTAAT 1 cut(s) 23
XapI RAATTY 1 cut(s) 919
XhoI CTCGAG 1 cut(s) 563
XmiI GTMKAC 2 cut(s) 360, 716
ZraI GACGTC 2 cut(s) 403, 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.