RLG00000004263

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011713
Physical Location & Seq
Reverse (-)
57806140 .. 57807072
933 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004263

Sequence Viewer

Length: 933 bp
ATGCAGACCAGTAGCGCCGCTGCGAGTTCTTTAACCTCGCTCTCTCCCAGCTTCAACGCCTACTCTTCCTCCGACCGCCTCGCTCAGATCGCCGCCCGCGTCGTCAGCGAGTTTCGTCAAGAACTTGACGAGGCAGGTTTGGAAGACATTGATGATCTGTATGATAACGACAACGACGTGCAATTCTCACCGCCGCGGTTGGAAGCGCAACAAGAGGCTGAAAACGACCACGTAAAGGAGGCGGCGGATGAGGAAGAAGATGAAGAGGAGGAGGAGGAGTTTGAGTTCGCTTTTGTGTACAGAGAGGGAGAGGCGCCGACGTCTCCGATTGCGGCGGAGGAGGTTTTTTACAACGGTCAGATCAGGCCTGTATACCCGGTCTTCGACCAGAGCTTGCTTCTCCAAAACGACGACATGGAATCCGACTCTACTCTTGCCGTGAATAAAGATTCCGAGAGGCCGTCGACGGTTACGAAGCCGCGTCGTCAGCCGCTGAGAATGCTCATGATCGAGGAGGAGCGCGAGGCCGCGTCGTGCTCGTCTTCCGAGGCCGACGACCTGGAGAACCTGCCACCTGGCACTTACTGCGTGTGGGCCCCGCCCAAGGCTTCGGGAAAAGGTGGAGGAAGAAGCGGCGGCGGTTGCGATAAGAGCAGCTCGACCGGGTCGTCGAAGCGGTGGAAGTTTCGGGACCTTCTTTCTCGGAGCAGTAGCGACGGCGCCAAGGACACTTTCGTCTTTTTTGCTCCGACGACGACGACGACCAAGACCGCAGAGAAGGAGGGCAGTAACGTCGTAGTCGCGCGGAAAGGGAAGAGCAGCAAAGCCGTGGCTGATGGGGATAAACGACGGTCGTTTCTGCCATACAGGCAGGACCTGGTGGGGTTTTTCTCTAATGTGAATGGGCTTAGTAGGAATTTGCATCCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

311

Amino Acids

34.14

Weight (kDa)

4.56

Isoelectric Point (pI)

67.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 112 - 279 4e-23 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011713)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62770
fragaria_vesca FvH4_5g05310
malus_domestica MD14G1180400.v1.1
prunus_persica Prupe.5G173800_v2.0.a1 Prupe.5G173800_v2.0.a1
pyrus_communis pycom06g15510 pycom14g15040
rosa_chinensis RchiOBHm_Chr7g0193551
rosa_laevigata RLG00000004263
rosa_multiflora Rmu_sc0000282.1_g000001 Rmu_sc0041282.1_g000001 Rmu_ssc0000035.1_g000002
rosa_roxburghii Rroxscaffold_3G00262010
rosa_rugosa Rorug07G0010200
rosa_samantha Rh7AG137000 Rh7BG137300 Rh7CG140600 Rh7DG138400
rosa_wichuraiana Rw7G011670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 667, 734
AatII GACGTC 1 cut(s) 323
Acc36I ACCTGC 2 cut(s) 125, 576
AccB1I GGYRCC 2 cut(s) 313, 719
AccI GTMKAC 2 cut(s) 372, 464
AccII CGCG 7 cut(s) 99, 196, 481, 522, 530, 803, 805
AcsI RAATTY 1 cut(s) 916
AcyI GRCGYC 3 cut(s) 314, 320, 720
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 2 cut(s) 235, 604
AgsI TTSAA 1 cut(s) 55
AjiI CACGTC 1 cut(s) 178
AjnI CCWGG 3 cut(s) 558, 574, 876
AjuI GAANNNNNNNTTGG 2 cut(s) 716, 748
AloI GAACNNNNNNTCC 2 cut(s) 269, 301
AluBI AGCT 3 cut(s) 51, 393, 657
AluI AGCT 3 cut(s) 51, 393, 657
Alw21I GWGCWC 1 cut(s) 539
Alw26I GTCTC 1 cut(s) 327
AlwNI CAGNNNCTG 2 cut(s) 493, 877
AoxI GGCC 5 cut(s) 365, 458, 525, 549, 594
ApaI GGGCCC 1 cut(s) 598
ApeKI GCWGC 3 cut(s) 20, 654, 819
ApoI RAATTY 1 cut(s) 916
AspLEI GCGC 6 cut(s) 17, 208, 316, 522, 722, 805
AspS9I GGNCC 4 cut(s) 594, 595, 691, 874
AsuC2I CCSGG 2 cut(s) 377, 664
AsuHPI GGTGA 1 cut(s) 180
AvaII GGWCC 2 cut(s) 691, 874
BaeGI GKGCMC 1 cut(s) 598
BanI GGYRCC 2 cut(s) 313, 719
BanII GRGCYC 1 cut(s) 598
BbsI GAAGAC 3 cut(s) 150, 373, 534
Bbv12I GWGCWC 1 cut(s) 539
BbvI GCAGC 3 cut(s) 7, 666, 831
BccI CCATC 1 cut(s) 830
BceAI ACGGC 4 cut(s) 422, 445, 733, 812
BcgI CGANNNNNNTGC 2 cut(s) 775, 809
BciT130I CCWGG 3 cut(s) 560, 576, 878
BcnI CCSGG 2 cut(s) 377, 664
BcoDI GTCTC 1 cut(s) 327
BfoI RGCGCY 3 cut(s) 18, 317, 723
BfuAI ACCTGC 2 cut(s) 125, 576
BglI GCCNNNNNGGC 1 cut(s) 868
Bme1390I CCNGG 5 cut(s) 377, 560, 576, 664, 878
Bme18I GGWCC 2 cut(s) 691, 874
BmgBI CACGTC 1 cut(s) 178
BmgT120I GGNCC 4 cut(s) 594, 595, 691, 874
BmiI GGNNCC 5 cut(s) 315, 596, 597, 692, 721
BmrFI CCNGG 5 cut(s) 377, 560, 576, 664, 878
BpiI GAAGAC 3 cut(s) 150, 373, 534
BpmI CTGGAG 1 cut(s) 581
BpuMI CCSGG 2 cut(s) 377, 664
BsaAI YACGTR 1 cut(s) 232
BsaHI GRCGYC 3 cut(s) 314, 320, 720
BsaJI CCNNGG 5 cut(s) 194, 546, 603, 723, 828
BsaXI ACNNNNNCTCC 6 cut(s) 53, 83, 263, 269, 293, 299
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 604
Bse1I ACTGG 1 cut(s) 9
BseBI CCWGG 3 cut(s) 560, 576, 878
BseDI CCNNGG 5 cut(s) 194, 546, 603, 723, 828
BseGI GGATG 2 cut(s) 253, 922
BseLI CCNNNNNNNGG 2 cut(s) 235, 604
BseMII CTCAG 2 cut(s) 98, 485
BseNI ACTGG 1 cut(s) 9
BseRI GAGGAG 7 cut(s) 281, 284, 287, 290, 353, 527, 530
BseSI GKGCMC 1 cut(s) 598
BseXI GCAGC 3 cut(s) 7, 666, 831
BseYI CCCAGC 1 cut(s) 47
Bsh1236I CGCG 7 cut(s) 99, 196, 481, 522, 530, 803, 805
Bsh1285I CGRYCG 3 cut(s) 76, 663, 854
BshFI GGCC 5 cut(s) 367, 460, 527, 551, 596
BshNI GGYRCC 2 cut(s) 313, 719
BsiEI CGRYCG 3 cut(s) 76, 663, 854
BsiHKAI GWGCWC 1 cut(s) 539
BsiSI CCGG 2 cut(s) 377, 663
BslFI GGGAC 1 cut(s) 704
BslI CCNNNNNNNGG 2 cut(s) 235, 604
BsmAI GTCTC 1 cut(s) 327
BsmBI CGTCTC 1 cut(s) 327
BsmFI GGGAC 1 cut(s) 704
BsmI GAATGC 1 cut(s) 504
BsnI GGCC 5 cut(s) 367, 460, 527, 551, 596
Bsp120I GGGCCC 1 cut(s) 594
Bsp1286I GDGCHC 2 cut(s) 539, 598
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 4 cut(s) 87, 154, 360, 507
BspANI GGCC 5 cut(s) 367, 460, 527, 551, 596
BspCNI CTCAG 2 cut(s) 97, 486
BspFNI CGCG 7 cut(s) 99, 196, 481, 522, 530, 803, 805
BspHI TCATGA 1 cut(s) 504
BspLI GGNNCC 5 cut(s) 315, 596, 597, 692, 721
BspMI ACCTGC 2 cut(s) 125, 576
BspQI GCTCTTC 1 cut(s) 809
BspT107I GGYRCC 2 cut(s) 313, 719
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 1 cut(s) 9
BssECI CCNNGG 5 cut(s) 194, 546, 603, 723, 828
BssMI GATC 4 cut(s) 87, 154, 360, 507
BssNAI GTATAC 1 cut(s) 373
BssNI GRCGYC 3 cut(s) 314, 320, 720
BssT1I CCWWGG 2 cut(s) 603, 723
Bst1107I GTATAC 1 cut(s) 373
Bst2UI CCWGG 3 cut(s) 560, 576, 878
Bst4CI ACNGT 3 cut(s) 356, 469, 852
Bst6I CTCTTC 3 cut(s) 70, 258, 809
BstACI GRCGYC 3 cut(s) 314, 320, 720
BstAPI GCANNNNNTGC 1 cut(s) 585
BstAUI TGTACA 1 cut(s) 297
BstBAI YACGTR 1 cut(s) 232
BstC8I GCNNGC 2 cut(s) 97, 395
BstDEI CTNAG 3 cut(s) 84, 494, 908
BstDSI CCRYGG 2 cut(s) 194, 828
BstF5I GGATG 2 cut(s) 253, 922
BstFNI CGCG 7 cut(s) 99, 196, 481, 522, 530, 803, 805
BstH2I RGCGCY 3 cut(s) 18, 317, 723
BstHHI GCGC 6 cut(s) 17, 208, 316, 522, 722, 805
BstKTI GATC 4 cut(s) 90, 157, 363, 510
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 4 cut(s) 87, 154, 360, 507
BstMCI CGRYCG 3 cut(s) 76, 663, 854
BstMWI GCNNNNNNNGC 8 cut(s) 89, 105, 487, 499, 585, 642, 651, 868
BstNI CCWGG 3 cut(s) 560, 576, 878
BstSCI CCNGG 5 cut(s) 375, 558, 574, 662, 876
BstSLI GKGCMC 1 cut(s) 598
BstUI CGCG 7 cut(s) 99, 196, 481, 522, 530, 803, 805
BstV1I GCAGC 3 cut(s) 7, 666, 831
BstV2I GAAGAC 3 cut(s) 150, 373, 534
BstZ17I GTATAC 1 cut(s) 373
BsuRI GGCC 5 cut(s) 367, 460, 527, 551, 596
BtgI CCRYGG 2 cut(s) 194, 828
BtrI CACGTC 1 cut(s) 178
BtsCI GGATG 2 cut(s) 253, 922
BveI ACCTGC 2 cut(s) 125, 576
Cac8I GCNNGC 2 cut(s) 97, 395
CaiI CAGNNNCTG 2 cut(s) 493, 877
CciI TCATGA 1 cut(s) 504
CfoI GCGC 6 cut(s) 17, 208, 316, 522, 722, 805
Cfr13I GGNCC 4 cut(s) 594, 595, 691, 874
Cfr42I CCGCGG 1 cut(s) 197
CseI GACGC 3 cut(s) 88, 470, 519
CsiI ACCWGGT 1 cut(s) 876
Csp6I GTAC 1 cut(s) 298
CviAII CATG 2 cut(s) 415, 505
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 3 cut(s) 84, 494, 908
DinI GGCGCC 2 cut(s) 315, 721
DpnI GATC 4 cut(s) 89, 156, 362, 509
DpnII GATC 4 cut(s) 87, 154, 360, 507
DrdI GACNNNNNNGTC 2 cut(s) 667, 734
DseDI GACNNNNNNGTC 2 cut(s) 667, 734
Eam1104I CTCTTC 3 cut(s) 70, 258, 809
EarI CTCTTC 3 cut(s) 70, 258, 809
EciI GGCGGA 2 cut(s) 260, 350
Eco130I CCWWGG 2 cut(s) 603, 723
Eco147I AGGCCT 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 598
Eco47I GGWCC 2 cut(s) 691, 874
EcoO109I RGGNCCY 3 cut(s) 595, 691, 874
EcoRII CCWGG 3 cut(s) 558, 574, 876
EcoT14I CCWWGG 2 cut(s) 603, 723
EcoT38I GRGCYC 1 cut(s) 598
EgeI GGCGCC 2 cut(s) 315, 721
EheI GGCGCC 2 cut(s) 315, 721
ErhI CCWWGG 2 cut(s) 603, 723
Esp3I CGTCTC 1 cut(s) 327
FaeI CATG 2 cut(s) 418, 508
FaiI YATR 5 cut(s) 162, 373, 416, 506, 865
FaqI GGGAC 1 cut(s) 704
FatI CATG 2 cut(s) 414, 504
FauI CCCGC 2 cut(s) 104, 606
FblI GTMKAC 2 cut(s) 372, 464
FokI GGATG 2 cut(s) 260, 909
FriOI GRGCYC 1 cut(s) 598
GlaI GCGC 6 cut(s) 16, 207, 315, 521, 721, 804
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 581
HaeII RGCGCY 3 cut(s) 18, 317, 723
HaeIII GGCC 5 cut(s) 367, 460, 527, 551, 596
HapII CCGG 2 cut(s) 377, 663
HgaI GACGC 3 cut(s) 88, 470, 519
HhaI GCGC 6 cut(s) 17, 208, 316, 522, 722, 805
Hin1I GRCGYC 3 cut(s) 314, 320, 720
Hin1II CATG 2 cut(s) 418, 508
Hin6I GCGC 6 cut(s) 15, 206, 314, 520, 720, 803
HinP1I GCGC 6 cut(s) 15, 206, 314, 520, 720, 803
HincII GTYRAC 1 cut(s) 465
HindII GTYRAC 1 cut(s) 465
HinfI GANTC 3 cut(s) 419, 425, 449
HpaII CCGG 2 cut(s) 377, 663
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 3 cut(s) 298, 373, 465
Hpy188III TCNNGA 4 cut(s) 119, 505, 612, 689
Hpy8I GTNNAC 3 cut(s) 298, 373, 465
HpyAV CCTTC 2 cut(s) 704, 772
HpyCH4III ACNGT 3 cut(s) 356, 469, 852
HpyCH4IV ACGT 4 cut(s) 177, 231, 320, 792
HpyCH4V TGCA 3 cut(s) 4, 181, 922
HpyF10VI GCNNNNNNNGC 8 cut(s) 89, 105, 487, 499, 585, 642, 651, 868
HpyF3I CTNAG 3 cut(s) 84, 494, 908
HpySE526I ACGT 4 cut(s) 177, 231, 320, 792
Hsp92I GRCGYC 3 cut(s) 314, 320, 720
Hsp92II CATG 2 cut(s) 418, 508
HspAI GCGC 6 cut(s) 15, 206, 314, 520, 720, 803
KasI GGCGCC 2 cut(s) 313, 719
KspI CCGCGG 1 cut(s) 197
Kzo9I GATC 4 cut(s) 87, 154, 360, 507
LguI GCTCTTC 1 cut(s) 809
LmnI GCTCC 3 cut(s) 517, 705, 751
Lsp1109I GCAGC 3 cut(s) 7, 666, 831
MabI ACCWGGT 1 cut(s) 876
MaeII ACGT 4 cut(s) 177, 231, 320, 792
MaeIII GTNAC 2 cut(s) 469, 788
MalI GATC 4 cut(s) 89, 156, 362, 509
MboI GATC 4 cut(s) 87, 154, 360, 507
MboII GAAGA 9 cut(s) 57, 155, 266, 269, 275, 373, 534, 639, 826
MhlI GDGCHC 2 cut(s) 539, 598
MluCI AATT 2 cut(s) 182, 916
Mly113I GGCGCC 2 cut(s) 314, 720
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 4 cut(s) 96, 180, 447, 773
MseI TTAA 1 cut(s) 32
MspA1I CMGCKG 3 cut(s) 20, 196, 493
MspI CCGG 2 cut(s) 377, 663
MspR9I CCNGG 5 cut(s) 377, 560, 576, 664, 878
Mva1269I GAATGC 1 cut(s) 504
MvaI CCWGG 3 cut(s) 560, 576, 878
MvnI CGCG 7 cut(s) 99, 196, 481, 522, 530, 803, 805
MwoI GCNNNNNNNGC 8 cut(s) 89, 105, 487, 499, 585, 642, 651, 868
NarI GGCGCC 2 cut(s) 314, 720
NciI CCSGG 2 cut(s) 377, 664
NdeII GATC 4 cut(s) 87, 154, 360, 507
NlaIII CATG 2 cut(s) 418, 508
NlaIV GGNNCC 5 cut(s) 315, 596, 597, 692, 721
PagI TCATGA 1 cut(s) 504
PceI AGGCCT 1 cut(s) 367
PciSI GCTCTTC 1 cut(s) 809
PcsI WCGNNNNNNNCGW 5 cut(s) 96, 174, 470, 665, 758
PctI GAATGC 1 cut(s) 504
PfeI GAWTC 2 cut(s) 419, 449
PflFI GACNNNGTC 1 cut(s) 664
PleI GAGTC 1 cut(s) 419
PluTI GGCGCC 2 cut(s) 317, 723
PpsI GAGTC 1 cut(s) 419
Ppu21I YACGTR 1 cut(s) 232
PpuMI RGGWCCY 2 cut(s) 691, 874
Psp5II RGGWCCY 2 cut(s) 691, 874
Psp6I CCWGG 3 cut(s) 558, 574, 876
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 3 cut(s) 558, 574, 876
PspN4I GGNNCC 5 cut(s) 315, 596, 597, 692, 721
PspOMI GGGCCC 1 cut(s) 594
PspPI GGNCC 4 cut(s) 594, 595, 691, 874
PspPPI RGGWCCY 2 cut(s) 691, 874
PstNI CAGNNNCTG 2 cut(s) 493, 877
PsyI GACNNNGTC 1 cut(s) 664
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SacII CCGCGG 1 cut(s) 197
SalI GTCGAC 1 cut(s) 463
SapI GCTCTTC 1 cut(s) 809
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 4 cut(s) 87, 154, 360, 507
Sau96I GGNCC 4 cut(s) 594, 595, 691, 874
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 5 cut(s) 377, 560, 576, 664, 878
SduI GDGCHC 2 cut(s) 539, 598
SexAI ACCWGGT 1 cut(s) 876
SfoI GGCGCC 2 cut(s) 315, 721
Sfr303I CCGCGG 1 cut(s) 197
SgrBI CCGCGG 1 cut(s) 197
SgrDI CGTCGACG 1 cut(s) 463
SinI GGWCC 2 cut(s) 691, 874
Sse9I AATT 2 cut(s) 182, 916
SseBI AGGCCT 1 cut(s) 367
SspDI GGCGCC 2 cut(s) 313, 719
StuI AGGCCT 1 cut(s) 367
StyD4I CCNGG 5 cut(s) 375, 558, 574, 662, 876
StyI CCWWGG 2 cut(s) 603, 723
TaaI ACNGT 3 cut(s) 356, 469, 852
TaiI ACGT 4 cut(s) 180, 234, 323, 795
TaqI TCGA 5 cut(s) 384, 464, 510, 659, 671
TasI AATT 2 cut(s) 182, 916
TatI WGTACW 1 cut(s) 297
TfiI GAWTC 2 cut(s) 419, 449
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseI GCWGC 3 cut(s) 20, 654, 819
TspDTI ATGAA 1 cut(s) 276
Tth111I GACNNNGTC 1 cut(s) 664
VpaK11BI GGWCC 2 cut(s) 691, 874
XapI RAATTY 1 cut(s) 916
XmiI GTMKAC 2 cut(s) 372, 464
ZraI GACGTC 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.