Rh7CG140600

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0011713
Physical Location & Seq
Forward (+)
11434947 .. 11436385
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG140600.1

Sequence Viewer

Length: 933 bp
ATGCAGACCAGTAGCGCCGCTGCGAGTTCGTTAACCTCGCTCTCTCCCAGCTTCAACGCCTACTCTTCCTCCGACAGCCTCGCTCAGATCGCCGCCCGCGTCGTCAGCGAGTTTCGTCAAGAACTCGATGAGGCAGGTTTGGAAGACATTGATGATCTGTACGATAACAACAACGACGCGCAATTCTCACCGCCGCGGTTGGAAGCGCAACAAGAGGCTGAAAACGACGACGTAAAGGAGGCTGCGGATGAGGAAGAAGATGAAGAGGAGGAGGAGTTTGAGTTCGCTTTTGTGTGCAGAGAGGGAGAGGCGCCGACGTCTCCGATTGCGGCGGAGGAGGTTTTTTATAACGGTCAGATCAGGCCGGTATACCCGGTCTTCGACCAGAGCTTGCTTCTCCAAAACGACGACGACCTTGAATCCGACTCTACGCATGCCGTGAATAAAGATTCCGAGAGGCCGTCGACGGTTACGAAGCCGCGTCGTCAGCCGCTAAGAATGCTCATGATCGAGGAGGAGCGCGAGGCCGCGTCCTGCTCGTCTTCCGAGGCCGACGACCTGGAGAACCTGCCACCTGGAACTTACTGCGTGTGGGCCCCGCCCAAGGCTTCCGGAAGAAGCGGCGGAGGCGGCGGCGGCGGCGGTTGCGATAAGAGCAGCTCGACCGGGTCGTCGAAGCGGTGGAAGTTTCGGGACCTTCTTTCTCGGAGCAGTAGCGACGGCGCCAAGGACACTCTCGTCTTTTTTGCTCCGACGACGACGACCAAGACGGCAGAGAAGGAGGGCAGTAACGTCGTAGTCGCGCGGAAAGGGAAGAGCAGCAAAGCCGTGGCTGATGGGGATAAACGGCGGTCGTTTCTGCCATACAGGCAGGACCTGGTGGGGTTTTTCTCTAATGTGAATGGGCTTAGTAGGAATTTGCATCCGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

310

Amino Acids

33.8

Weight (kDa)

4.48

Isoelectric Point (pI)

69.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 111 - 278 5.9e-23 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011713)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62770
fragaria_vesca FvH4_5g05310
malus_domestica MD14G1180400.v1.1
prunus_persica Prupe.5G173800_v2.0.a1 Prupe.5G173800_v2.0.a1
pyrus_communis pycom06g15510 pycom14g15040
rosa_chinensis RchiOBHm_Chr7g0193551
rosa_laevigata RLG00000004263
rosa_multiflora Rmu_sc0000282.1_g000001 Rmu_sc0041282.1_g000001 Rmu_ssc0000035.1_g000002
rosa_roxburghii Rroxscaffold_3G00262010
rosa_rugosa Rorug07G0010200
rosa_samantha Rh7AG137000 Rh7BG137300 Rh7CG140600 Rh7DG138400
rosa_wichuraiana Rw7G011670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
AasI GACNNNNNNGTC 2 cut(s) 670, 737
AatII GACGTC 1 cut(s) 320
Acc36I ACCTGC 2 cut(s) 125, 576
AccB1I GGYRCC 2 cut(s) 310, 722
AccI GTMKAC 2 cut(s) 369, 464
AccII CGCG 8 cut(s) 99, 179, 196, 481, 522, 530, 803, 805
AccIII TCCGGA 1 cut(s) 611
AcsI RAATTY 1 cut(s) 916
AcyI GRCGYC 3 cut(s) 311, 317, 723
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 604
AgsI TTSAA 2 cut(s) 55, 419
AjnI CCWGG 3 cut(s) 558, 574, 876
AloI GAACNNNNNNTCC 2 cut(s) 266, 298
AluBI AGCT 3 cut(s) 51, 390, 660
AluI AGCT 3 cut(s) 51, 390, 660
Alw26I GTCTC 1 cut(s) 324
AlwNI CAGNNNCTG 1 cut(s) 877
Aor13HI TCCGGA 1 cut(s) 611
AoxI GGCC 5 cut(s) 362, 458, 525, 549, 594
ApaI GGGCCC 1 cut(s) 598
ApeKI GCWGC 4 cut(s) 20, 242, 657, 819
ApoI RAATTY 1 cut(s) 916
AspLEI GCGC 7 cut(s) 17, 181, 208, 313, 522, 725, 805
AspS9I GGNCC 4 cut(s) 594, 595, 694, 874
AsuC2I CCSGG 2 cut(s) 374, 667
AsuHPI GGTGA 1 cut(s) 180
AvaII GGWCC 2 cut(s) 694, 874
BaeGI GKGCMC 1 cut(s) 598
BanI GGYRCC 2 cut(s) 310, 722
BanII GRGCYC 1 cut(s) 598
BbsI GAAGAC 3 cut(s) 150, 370, 534
BbvI GCAGC 4 cut(s) 7, 229, 669, 831
BccI CCATC 1 cut(s) 830
BceAI ACGGC 6 cut(s) 422, 445, 736, 786, 812, 863
BcgI CGANNNNNNTGC 2 cut(s) 775, 809
BciT130I CCWGG 3 cut(s) 560, 576, 878
BcnI CCSGG 2 cut(s) 374, 667
BcoDI GTCTC 1 cut(s) 324
BfoI RGCGCY 3 cut(s) 18, 314, 726
BfuAI ACCTGC 2 cut(s) 125, 576
BglI GCCNNNNNGGC 1 cut(s) 868
Bme1390I CCNGG 5 cut(s) 374, 560, 576, 667, 878
Bme18I GGWCC 2 cut(s) 694, 874
BmgT120I GGNCC 4 cut(s) 594, 595, 694, 874
BmiI GGNNCC 5 cut(s) 312, 596, 597, 695, 724
BmrFI CCNGG 5 cut(s) 374, 560, 576, 667, 878
BpiI GAAGAC 3 cut(s) 150, 370, 534
BpmI CTGGAG 1 cut(s) 581
BpuMI CCSGG 2 cut(s) 374, 667
BsaHI GRCGYC 3 cut(s) 311, 317, 723
BsaJI CCNNGG 5 cut(s) 194, 546, 603, 726, 828
BsaWI WCCGGW 1 cut(s) 611
BsaXI ACNNNNNCTCC 6 cut(s) 53, 83, 260, 266, 290, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 604
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 611
BseBI CCWGG 3 cut(s) 560, 576, 878
BseDI CCNNGG 5 cut(s) 194, 546, 603, 726, 828
BseGI GGATG 2 cut(s) 253, 922
BseLI CCNNNNNNNGG 1 cut(s) 604
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 9
BseRI GAGGAG 6 cut(s) 281, 284, 287, 350, 527, 530
BseSI GKGCMC 1 cut(s) 598
BseXI GCAGC 4 cut(s) 7, 229, 669, 831
BseYI CCCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 316
Bsh1236I CGCG 8 cut(s) 99, 179, 196, 481, 522, 530, 803, 805
Bsh1285I CGRYCG 2 cut(s) 666, 854
BshFI GGCC 5 cut(s) 364, 460, 527, 551, 596
BshNI GGYRCC 2 cut(s) 310, 722
BsiEI CGRYCG 2 cut(s) 666, 854
BsiSI CCGG 4 cut(s) 365, 374, 612, 666
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 1 cut(s) 604
BsmAI GTCTC 1 cut(s) 324
BsmBI CGTCTC 1 cut(s) 324
BsmFI GGGAC 1 cut(s) 707
BsmI GAATGC 1 cut(s) 504
BsnI GGCC 5 cut(s) 364, 460, 527, 551, 596
Bsp120I GGGCCC 1 cut(s) 594
Bsp1286I GDGCHC 1 cut(s) 598
Bsp13I TCCGGA 1 cut(s) 611
Bsp143I GATC 4 cut(s) 87, 154, 357, 507
BspANI GGCC 5 cut(s) 364, 460, 527, 551, 596
BspCNI CTCAG 1 cut(s) 97
BspEI TCCGGA 1 cut(s) 611
BspFNI CGCG 8 cut(s) 99, 179, 196, 481, 522, 530, 803, 805
BspHI TCATGA 1 cut(s) 504
BspLI GGNNCC 5 cut(s) 312, 596, 597, 695, 724
BspMI ACCTGC 2 cut(s) 125, 576
BspQI GCTCTTC 1 cut(s) 809
BspT107I GGYRCC 2 cut(s) 310, 722
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 1 cut(s) 9
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 5 cut(s) 194, 546, 603, 726, 828
BssMI GATC 4 cut(s) 87, 154, 357, 507
BssNAI GTATAC 1 cut(s) 370
BssNI GRCGYC 3 cut(s) 311, 317, 723
BssT1I CCWWGG 2 cut(s) 603, 726
Bst1107I GTATAC 1 cut(s) 370
Bst2UI CCWGG 3 cut(s) 560, 576, 878
Bst4CI ACNGT 2 cut(s) 353, 469
Bst6I CTCTTC 3 cut(s) 70, 258, 809
BstACI GRCGYC 3 cut(s) 311, 317, 723
BstC8I GCNNGC 3 cut(s) 97, 392, 435
BstDEI CTNAG 3 cut(s) 84, 494, 908
BstDSI CCRYGG 2 cut(s) 194, 828
BstF5I GGATG 2 cut(s) 253, 922
BstFNI CGCG 8 cut(s) 99, 179, 196, 481, 522, 530, 803, 805
BstH2I RGCGCY 3 cut(s) 18, 314, 726
BstHHI GCGC 7 cut(s) 17, 181, 208, 313, 522, 725, 805
BstKTI GATC 4 cut(s) 90, 157, 360, 510
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 4 cut(s) 87, 154, 357, 507
BstMCI CGRYCG 2 cut(s) 666, 854
BstNI CCWGG 3 cut(s) 560, 576, 878
BstNSI RCATGY 1 cut(s) 437
BstSCI CCNGG 5 cut(s) 372, 558, 574, 665, 876
BstSLI GKGCMC 1 cut(s) 598
BstUI CGCG 8 cut(s) 99, 179, 196, 481, 522, 530, 803, 805
BstV1I GCAGC 4 cut(s) 7, 229, 669, 831
BstV2I GAAGAC 3 cut(s) 150, 370, 534
BstZ17I GTATAC 1 cut(s) 370
BsuRI GGCC 5 cut(s) 364, 460, 527, 551, 596
BtgI CCRYGG 2 cut(s) 194, 828
BtsCI GGATG 2 cut(s) 253, 922
BveI ACCTGC 2 cut(s) 125, 576
Cac8I GCNNGC 3 cut(s) 97, 392, 435
CaiI CAGNNNCTG 1 cut(s) 877
CciI TCATGA 1 cut(s) 504
CfoI GCGC 7 cut(s) 17, 181, 208, 313, 522, 725, 805
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 4 cut(s) 594, 595, 694, 874
Cfr42I CCGCGG 1 cut(s) 197
CseI GACGC 4 cut(s) 88, 185, 470, 519
CsiI ACCWGGT 1 cut(s) 876
Csp6I GTAC 1 cut(s) 160
CviAII CATG 2 cut(s) 434, 505
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 3 cut(s) 84, 494, 908
DinI GGCGCC 2 cut(s) 312, 724
DpnI GATC 4 cut(s) 89, 156, 359, 509
DpnII GATC 4 cut(s) 87, 154, 357, 507
DrdI GACNNNNNNGTC 2 cut(s) 670, 737
DseDI GACNNNNNNGTC 2 cut(s) 670, 737
Eam1104I CTCTTC 3 cut(s) 70, 258, 809
EarI CTCTTC 3 cut(s) 70, 258, 809
EciI GGCGGA 2 cut(s) 347, 639
Eco130I CCWWGG 2 cut(s) 603, 726
Eco24I GRGCYC 1 cut(s) 598
Eco47I GGWCC 2 cut(s) 694, 874
EcoO109I RGGNCCY 3 cut(s) 595, 694, 874
EcoRII CCWGG 3 cut(s) 558, 574, 876
EcoT14I CCWWGG 2 cut(s) 603, 726
EcoT38I GRGCYC 1 cut(s) 598
EgeI GGCGCC 2 cut(s) 312, 724
EheI GGCGCC 2 cut(s) 312, 724
ErhI CCWWGG 2 cut(s) 603, 726
Esp3I CGTCTC 1 cut(s) 324
FaeI CATG 2 cut(s) 437, 508
FaiI YATR 5 cut(s) 348, 370, 435, 506, 865
FaqI GGGAC 1 cut(s) 707
FatI CATG 2 cut(s) 433, 504
FauI CCCGC 2 cut(s) 104, 606
FblI GTMKAC 2 cut(s) 369, 464
FokI GGATG 2 cut(s) 260, 909
FriOI GRGCYC 1 cut(s) 598
GlaI GCGC 7 cut(s) 16, 180, 207, 312, 521, 724, 804
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 581
HaeII RGCGCY 3 cut(s) 18, 314, 726
HaeIII GGCC 5 cut(s) 364, 460, 527, 551, 596
HapII CCGG 4 cut(s) 365, 374, 612, 666
HgaI GACGC 4 cut(s) 88, 185, 470, 519
HhaI GCGC 7 cut(s) 17, 181, 208, 313, 522, 725, 805
Hin1I GRCGYC 3 cut(s) 311, 317, 723
Hin1II CATG 2 cut(s) 437, 508
Hin6I GCGC 7 cut(s) 15, 179, 206, 311, 520, 723, 803
HinP1I GCGC 7 cut(s) 15, 179, 206, 311, 520, 723, 803
HincII GTYRAC 2 cut(s) 33, 465
HindII GTYRAC 2 cut(s) 33, 465
HinfI GANTC 3 cut(s) 419, 425, 449
HpaI GTTAAC 1 cut(s) 33
HpaII CCGG 4 cut(s) 365, 374, 612, 666
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 3 cut(s) 33, 370, 465
Hpy188III TCNNGA 4 cut(s) 119, 505, 612, 692
Hpy8I GTNNAC 3 cut(s) 33, 370, 465
HpyAV CCTTC 2 cut(s) 707, 772
HpyCH4III ACNGT 2 cut(s) 353, 469
HpyCH4IV ACGT 3 cut(s) 231, 317, 792
HpyCH4V TGCA 3 cut(s) 4, 297, 922
HpyF3I CTNAG 3 cut(s) 84, 494, 908
HpySE526I ACGT 3 cut(s) 231, 317, 792
Hsp92I GRCGYC 3 cut(s) 311, 317, 723
Hsp92II CATG 2 cut(s) 437, 508
HspAI GCGC 7 cut(s) 15, 179, 206, 311, 520, 723, 803
KasI GGCGCC 2 cut(s) 310, 722
Kpn2I TCCGGA 1 cut(s) 611
KspAI GTTAAC 1 cut(s) 33
KspI CCGCGG 1 cut(s) 197
Kzo9I GATC 4 cut(s) 87, 154, 357, 507
LguI GCTCTTC 1 cut(s) 809
LmnI GCTCC 3 cut(s) 517, 708, 754
Lsp1109I GCAGC 4 cut(s) 7, 229, 669, 831
MabI ACCWGGT 1 cut(s) 876
MaeII ACGT 3 cut(s) 231, 317, 792
MaeIII GTNAC 2 cut(s) 469, 788
MalI GATC 4 cut(s) 89, 156, 359, 509
MboI GATC 4 cut(s) 87, 154, 357, 507
MboII GAAGA 9 cut(s) 57, 155, 266, 269, 275, 370, 534, 627, 826
MhlI GDGCHC 1 cut(s) 598
MluCI AATT 2 cut(s) 182, 916
Mly113I GGCGCC 2 cut(s) 311, 723
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 4 cut(s) 96, 180, 447, 776
MroI TCCGGA 1 cut(s) 611
MseI TTAA 1 cut(s) 32
MspA1I CMGCKG 2 cut(s) 20, 196
MspI CCGG 4 cut(s) 365, 374, 612, 666
MspR9I CCNGG 5 cut(s) 374, 560, 576, 667, 878
Mva1269I GAATGC 1 cut(s) 504
MvaI CCWGG 3 cut(s) 560, 576, 878
MvnI CGCG 8 cut(s) 99, 179, 196, 481, 522, 530, 803, 805
NarI GGCGCC 2 cut(s) 311, 723
NciI CCSGG 2 cut(s) 374, 667
NdeII GATC 4 cut(s) 87, 154, 357, 507
NlaIII CATG 2 cut(s) 437, 508
NlaIV GGNNCC 5 cut(s) 312, 596, 597, 695, 724
NspI RCATGY 1 cut(s) 437
PaeI GCATGC 1 cut(s) 437
PagI TCATGA 1 cut(s) 504
PciSI GCTCTTC 1 cut(s) 809
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 470, 668
PctI GAATGC 1 cut(s) 504
PfeI GAWTC 2 cut(s) 419, 449
PflFI GACNNNGTC 1 cut(s) 667
PleI GAGTC 1 cut(s) 419
PluTI GGCGCC 2 cut(s) 314, 726
PpsI GAGTC 1 cut(s) 419
PpuMI RGGWCCY 2 cut(s) 694, 874
PsiI TTATAA 1 cut(s) 348
Psp5II RGGWCCY 2 cut(s) 694, 874
Psp6I CCWGG 3 cut(s) 558, 574, 876
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 3 cut(s) 558, 574, 876
PspN4I GGNNCC 5 cut(s) 312, 596, 597, 695, 724
PspOMI GGGCCC 1 cut(s) 594
PspPI GGNCC 4 cut(s) 594, 595, 694, 874
PspPPI RGGWCCY 2 cut(s) 694, 874
PstNI CAGNNNCTG 1 cut(s) 877
PsyI GACNNNGTC 1 cut(s) 667
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SacII CCGCGG 1 cut(s) 197
SalI GTCGAC 1 cut(s) 463
SapI GCTCTTC 1 cut(s) 809
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 4 cut(s) 87, 154, 357, 507
Sau96I GGNCC 4 cut(s) 594, 595, 694, 874
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 5 cut(s) 374, 560, 576, 667, 878
SduI GDGCHC 1 cut(s) 598
SexAI ACCWGGT 1 cut(s) 876
SfoI GGCGCC 2 cut(s) 312, 724
Sfr303I CCGCGG 1 cut(s) 197
SgrBI CCGCGG 1 cut(s) 197
SgrDI CGTCGACG 1 cut(s) 463
SinI GGWCC 2 cut(s) 694, 874
SphI GCATGC 1 cut(s) 437
Sse9I AATT 2 cut(s) 182, 916
SspDI GGCGCC 2 cut(s) 310, 722
StyD4I CCNGG 5 cut(s) 372, 558, 574, 665, 876
StyI CCWWGG 2 cut(s) 603, 726
TaaI ACNGT 2 cut(s) 353, 469
TaiI ACGT 3 cut(s) 234, 320, 795
TaqI TCGA 6 cut(s) 126, 381, 464, 510, 662, 674
TasI AATT 2 cut(s) 182, 916
TfiI GAWTC 2 cut(s) 419, 449
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseI GCWGC 4 cut(s) 20, 242, 657, 819
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 915
Tth111I GACNNNGTC 1 cut(s) 667
VpaK11BI GGWCC 2 cut(s) 694, 874
XapI RAATTY 1 cut(s) 916
XceI RCATGY 1 cut(s) 437
XmiI GTMKAC 2 cut(s) 369, 464
ZraI GACGTC 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.