pycom06g15510

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0011713
Physical Location & Seq
Forward (+)
20030101 .. 20031287
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g15510.2

Sequence Viewer

Length: 1050 bp
ATGAAAAAAGCTAATTTGTTATATATAAACTCTCAAATCCATTGTGGAAGGATCAAGTCCCACACTTTGTTTCGTTTCCACCCAAACCCTCCTTCCCTATTTCCCTTCCTTTATCTTTGCCCTCTCCTTTTTCTCTTTCCCTTAAAATATAGAAAAGCTGGATATCATCACCAAAAGCTCAGAGAATTGAAGAAGCTACCAGAGCGCTCTACCAGATTGATAATAATGCAGGCTGCTGCTACAGGTCCGCTAGTCTCGCTCTCTCCCAGCTTCAACACCTACTCTTCCTCCGACAGACTCGCCCAGATCGCCGCCCGAGTCGTCGACGAGTTCACCCACCAGGATCGCCAACTCACCCAGGAGCCCTACTGGGAAAGTATATACGATCACCAGGAAGAAGAAAAACTCCACCACCGCCGACAGCCGAAAAACGACGACGTACAGAAGGACAAGGAGGAGGAGGAAGAGGAGGAGTTTGAGTTTGCTTTTGTCAGCAGCGGAGGAGAGTCGCACACGTCGCCCATCTCCGCCGACGAGATTTTCTCCAACGGTCAAATCAAACCTACCGTCTACCCTCTCTTCAACCAAGACTTATTATTAGCTCACAACGACGTCGTATCCTCTACAAATGCTAACGACGATGCGGATGACGCCGTTAAGAAGCCGAAACCGCGCCGTTTGCCGCTCAGAATGCTCATGATCGAAGAGGAGCGCGAAACAGGGTCGTGCTCGTCCTCCGAGGCCGACGACCTCGAGAACCTGCCACCTGGCACGTACTGCGTGTGGGTCCCTCCGAAATCATGTCCTGGACAGCGCCGCTGCAATAAGAGCAGCTCCGGCGGCTCGTCGTCGAAGCGGTGGAAGTTTCGGAGCCTTCTTCACCGGAGCAGCAGCGACGACTTCGTCTTTTTGGCTCCCTCGTCGACCAAGAGAGCTAACAACAAGAAGGGAGATGACGTCACGCGGAAAAGAGTCGACAACAGCTGCGGCGGCGTCGGAGAATGGAGAGCATTATGTCGTGAGGAGCAAGGCCGAGGAGGCAGGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

350

Amino Acids

39.77

Weight (kDa)

8.33

Isoelectric Point (pI)

58.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011713)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62770
fragaria_vesca FvH4_5g05310
malus_domestica MD14G1180400.v1.1
prunus_persica Prupe.5G173800_v2.0.a1 Prupe.5G173800_v2.0.a1
pyrus_communis pycom06g15510 pycom14g15040
rosa_chinensis RchiOBHm_Chr7g0193551
rosa_laevigata RLG00000004263
rosa_multiflora Rmu_sc0000282.1_g000001 Rmu_sc0041282.1_g000001 Rmu_ssc0000035.1_g000002
rosa_roxburghii Rroxscaffold_3G00262010
rosa_rugosa Rorug07G0010200
rosa_samantha Rh7AG137000 Rh7BG137300 Rh7CG140600 Rh7DG138400
rosa_wichuraiana Rw7G011670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 902
AatII GACGTC 2 cut(s) 615, 960
Acc36I ACCTGC 1 cut(s) 768
AccBSI CCGCTC 1 cut(s) 685
AccI GTMKAC 4 cut(s) 324, 570, 923, 975
AccII CGCG 3 cut(s) 673, 714, 964
AclWI GGATC 2 cut(s) 59, 351
AcyI GRCGYC 4 cut(s) 612, 651, 957, 993
AfaI GTAC 2 cut(s) 441, 776
AfeI AGCGCT 1 cut(s) 206
AflIII ACRYGT 1 cut(s) 513
AgsI TTSAA 3 cut(s) 190, 274, 583
AjiI CACGTC 1 cut(s) 516
AjnI CCWGG 5 cut(s) 339, 357, 390, 766, 805
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
AluBI AGCT 9 cut(s) 11, 158, 178, 196, 270, 602, 834, 935, 984
AluI AGCT 9 cut(s) 11, 158, 178, 196, 270, 602, 834, 935, 984
Alw21I GWGCWC 1 cut(s) 731
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 2 cut(s) 59, 351
Ama87I CYCGRG 2 cut(s) 315, 752
Aor51HI AGCGCT 1 cut(s) 206
AoxI GGCC 2 cut(s) 741, 1030
ApeKI GCWGC 8 cut(s) 233, 236, 495, 819, 831, 888, 891, 984
ArsI GACNNNNNNTTYG 2 cut(s) 552, 584
AspLEI GCGC 4 cut(s) 207, 675, 714, 816
AspS9I GGNCC 2 cut(s) 245, 787
AsuHPI GGTGA 5 cut(s) 161, 325, 346, 380, 872
AvaI CYCGRG 2 cut(s) 315, 752
AvaII GGWCC 2 cut(s) 245, 787
BanII GRGCYC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 731
BbvI GCAGC 8 cut(s) 220, 223, 507, 806, 843, 900, 903, 971
BccI CCATC 1 cut(s) 530
BceAI ACGGC 2 cut(s) 638, 660
BciT130I CCWGG 5 cut(s) 341, 359, 392, 768, 807
BciVI GTATCC 1 cut(s) 628
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 1 cut(s) 251
BfmI CTRYAG 1 cut(s) 240
BfoI RGCGCY 2 cut(s) 208, 817
BfuAI ACCTGC 1 cut(s) 768
BfuI GTATCC 1 cut(s) 628
BglI GCCNNNNNGGC 1 cut(s) 1038
Bme1390I CCNGG 5 cut(s) 341, 359, 392, 768, 807
Bme18I GGWCC 2 cut(s) 245, 787
BmeT110I CYCGRG 2 cut(s) 315, 752
BmgBI CACGTC 1 cut(s) 516
BmgT120I GGNCC 2 cut(s) 245, 787
BmiI GGNNCC 5 cut(s) 363, 788, 789, 872, 915
BmrFI CCNGG 5 cut(s) 341, 359, 392, 768, 807
BmrI ACTGGG 1 cut(s) 379
BmsI GCATC 1 cut(s) 631
BmuI ACTGGG 1 cut(s) 379
BplI GAGNNNNNCTC 2 cut(s) 527, 559
BsaAI YACGTR 1 cut(s) 774
BsaHI GRCGYC 4 cut(s) 612, 651, 957, 993
BsaJI CCNNGG 3 cut(s) 357, 738, 1033
BsaWI WCCGGW 1 cut(s) 882
BsaXI ACNNNNNCTCC 6 cut(s) 272, 302, 464, 494, 942, 972
Bse1I ACTGG 1 cut(s) 374
BseBI CCWGG 5 cut(s) 341, 359, 392, 768, 807
BseDI CCNNGG 3 cut(s) 357, 738, 1033
BseGI GGATG 1 cut(s) 652
BseMII CTCAG 2 cut(s) 193, 700
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 8 cut(s) 470, 473, 482, 485, 516, 722, 1037, 1050
BseXI GCAGC 8 cut(s) 220, 223, 507, 806, 843, 900, 903, 971
BseYI CCCAGC 1 cut(s) 266
Bsh1236I CGCG 3 cut(s) 673, 714, 964
BshFI GGCC 2 cut(s) 743, 1032
BsiHKAI GWGCWC 1 cut(s) 731
BsiHKCI CYCGRG 2 cut(s) 315, 752
BsiSI CCGG 2 cut(s) 837, 883
BslFI GGGAC 2 cut(s) 43, 773
BsmAI GTCTC 1 cut(s) 259
BsmFI GGGAC 2 cut(s) 43, 773
BsmI GAATGC 1 cut(s) 696
BsnI GGCC 2 cut(s) 743, 1032
BsoBI CYCGRG 2 cut(s) 315, 752
Bsp1286I GDGCHC 2 cut(s) 366, 731
Bsp143I GATC 5 cut(s) 51, 306, 343, 385, 699
BspANI GGCC 2 cut(s) 743, 1032
BspCNI CTCAG 2 cut(s) 192, 699
BspFNI CGCG 3 cut(s) 673, 714, 964
BspHI TCATGA 1 cut(s) 696
BspLI GGNNCC 5 cut(s) 363, 788, 789, 872, 915
BspMI ACCTGC 1 cut(s) 768
BspPI GGATC 2 cut(s) 59, 351
BsrBI CCGCTC 1 cut(s) 685
BsrI ACTGG 1 cut(s) 374
BssECI CCNNGG 3 cut(s) 357, 738, 1033
BssMI GATC 5 cut(s) 51, 306, 343, 385, 699
BssNI GRCGYC 4 cut(s) 612, 651, 957, 993
Bst2UI CCWGG 5 cut(s) 341, 359, 392, 768, 807
Bst4CI ACNGT 2 cut(s) 551, 568
Bst6I CTCTTC 4 cut(s) 289, 459, 584, 699
BstACI GRCGYC 4 cut(s) 612, 651, 957, 993
BstAPI GCANNNNNTGC 1 cut(s) 777
BstBAI YACGTR 1 cut(s) 774
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 2 cut(s) 179, 686
BstF5I GGATG 1 cut(s) 652
BstFNI CGCG 3 cut(s) 673, 714, 964
BstH2I RGCGCY 2 cut(s) 208, 817
BstHHI GCGC 4 cut(s) 207, 675, 714, 816
BstKTI GATC 5 cut(s) 54, 309, 346, 388, 702
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 5 cut(s) 51, 306, 343, 385, 699
BstNI CCWGG 5 cut(s) 341, 359, 392, 768, 807
BstSCI CCNGG 5 cut(s) 339, 357, 390, 766, 805
BstSFI CTRYAG 1 cut(s) 240
BstUI CGCG 3 cut(s) 673, 714, 964
BstV1I GCAGC 8 cut(s) 220, 223, 507, 806, 843, 900, 903, 971
BsuI GTATCC 1 cut(s) 628
BsuRI GGCC 2 cut(s) 743, 1032
BtrI CACGTC 1 cut(s) 516
BtsCI GGATG 1 cut(s) 652
BveI ACCTGC 1 cut(s) 768
Cac8I GCNNGC 1 cut(s) 231
CciI TCATGA 1 cut(s) 696
CfoI GCGC 4 cut(s) 207, 675, 714, 816
Cfr13I GGNCC 2 cut(s) 245, 787
CseI GACGC 2 cut(s) 659, 982
Csp6I GTAC 2 cut(s) 440, 775
CviAII CATG 2 cut(s) 697, 801
CviQI GTAC 2 cut(s) 440, 775
DdeI CTNAG 2 cut(s) 179, 686
DpnI GATC 5 cut(s) 53, 308, 345, 387, 701
DpnII GATC 5 cut(s) 51, 306, 343, 385, 699
DrdI GACNNNNNNGTC 1 cut(s) 902
DseDI GACNNNNNNGTC 1 cut(s) 902
Eam1104I CTCTTC 4 cut(s) 289, 459, 584, 699
EarI CTCTTC 4 cut(s) 289, 459, 584, 699
EciI GGCGGA 1 cut(s) 517
Eco24I GRGCYC 1 cut(s) 366
Eco32I GATATC 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 245, 787
Eco47III AGCGCT 1 cut(s) 206
Eco88I CYCGRG 2 cut(s) 315, 752
EcoO109I RGGNCCY 1 cut(s) 787
EcoRII CCWGG 5 cut(s) 339, 357, 390, 766, 805
EcoRV GATATC 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 366
FaeI CATG 2 cut(s) 700, 804
FaiI YATR 9 cut(s) 22, 24, 26, 150, 380, 382, 698, 802, 1015
FaqI GGGAC 2 cut(s) 43, 773
FatI CATG 2 cut(s) 696, 800
FblI GTMKAC 4 cut(s) 324, 570, 923, 975
FokI GGATG 1 cut(s) 659
FriOI GRGCYC 1 cut(s) 366
FspBI CTAG 1 cut(s) 251
GlaI GCGC 4 cut(s) 206, 674, 713, 815
GsaI CCCAGC 1 cut(s) 270
HaeII RGCGCY 2 cut(s) 208, 817
HaeIII GGCC 2 cut(s) 743, 1032
HapII CCGG 2 cut(s) 837, 883
HgaI GACGC 2 cut(s) 659, 982
HhaI GCGC 4 cut(s) 207, 675, 714, 816
Hin1I GRCGYC 4 cut(s) 612, 651, 957, 993
Hin1II CATG 2 cut(s) 700, 804
Hin6I GCGC 4 cut(s) 205, 673, 712, 814
HinP1I GCGC 4 cut(s) 205, 673, 712, 814
HincII GTYRAC 3 cut(s) 325, 924, 976
HindII GTYRAC 3 cut(s) 325, 924, 976
HinfI GANTC 4 cut(s) 297, 318, 506, 972
HpaII CCGG 2 cut(s) 837, 883
HphI GGTGA 5 cut(s) 161, 325, 346, 380, 872
Hpy166II GTNNAC 5 cut(s) 325, 333, 571, 924, 976
Hpy188I TCNGA 7 cut(s) 182, 292, 689, 739, 795, 870, 998
Hpy188III TCNNGA 3 cut(s) 697, 754, 1019
Hpy8I GTNNAC 5 cut(s) 325, 333, 571, 924, 976
HpyAV CCTTC 6 cut(s) 42, 102, 115, 439, 884, 940
HpyCH4III ACNGT 2 cut(s) 551, 568
HpyCH4IV ACGT 5 cut(s) 438, 515, 612, 773, 957
HpyCH4V TGCA 2 cut(s) 229, 822
HpyF3I CTNAG 2 cut(s) 179, 686
HpySE526I ACGT 5 cut(s) 438, 515, 612, 773, 957
Hsp92I GRCGYC 4 cut(s) 612, 651, 957, 993
Hsp92II CATG 2 cut(s) 700, 804
HspAI GCGC 4 cut(s) 205, 673, 712, 814
KflI GGGWCCC 1 cut(s) 787
Kzo9I GATC 5 cut(s) 51, 306, 343, 385, 699
LmnI GCTCC 7 cut(s) 361, 709, 839, 870, 885, 919, 1024
Lsp1109I GCAGC 8 cut(s) 220, 223, 507, 806, 843, 900, 903, 971
LweI GCATC 1 cut(s) 631
MaeI CTAG 1 cut(s) 251
MaeII ACGT 5 cut(s) 438, 515, 612, 773, 957
MaeIII GTNAC 1 cut(s) 958
MalI GATC 5 cut(s) 53, 308, 345, 387, 701
MbiI CCGCTC 1 cut(s) 685
MboI GATC 5 cut(s) 51, 306, 343, 385, 699
MboII GAAGA 8 cut(s) 202, 276, 407, 410, 476, 571, 716, 869
MhlI GDGCHC 2 cut(s) 366, 731
MluCI AATT 2 cut(s) 13, 185
MlyI GAGTC 4 cut(s) 291, 327, 515, 981
MmeI TCCRAC 3 cut(s) 315, 570, 976
MseI TTAA 2 cut(s) 143, 657
MspA1I CMGCKG 3 cut(s) 498, 819, 984
MspI CCGG 2 cut(s) 837, 883
MspR9I CCNGG 5 cut(s) 341, 359, 392, 768, 807
Mva1269I GAATGC 1 cut(s) 696
MvaI CCWGG 5 cut(s) 341, 359, 392, 768, 807
MvnI CGCG 3 cut(s) 673, 714, 964
NdeII GATC 5 cut(s) 51, 306, 343, 385, 699
NlaIII CATG 2 cut(s) 700, 804
NlaIV GGNNCC 5 cut(s) 363, 788, 789, 872, 915
NmuCI GTSAC 1 cut(s) 958
PaeR7I CTCGAG 1 cut(s) 752
PagI TCATGA 1 cut(s) 696
PctI GAATGC 1 cut(s) 696
PflFI GACNNNGTC 1 cut(s) 902
PfoI TCCNGGA 1 cut(s) 805
PleI GAGTC 4 cut(s) 291, 326, 514, 980
PpsI GAGTC 4 cut(s) 291, 326, 514, 980
Ppu21I YACGTR 1 cut(s) 774
PpuMI RGGWCCY 1 cut(s) 787
Psp5II RGGWCCY 1 cut(s) 787
Psp6I CCWGG 5 cut(s) 339, 357, 390, 766, 805
PspFI CCCAGC 1 cut(s) 266
PspGI CCWGG 5 cut(s) 339, 357, 390, 766, 805
PspN4I GGNNCC 5 cut(s) 363, 788, 789, 872, 915
PspPI GGNCC 2 cut(s) 245, 787
PspPPI RGGWCCY 1 cut(s) 787
PsyI GACNNNGTC 1 cut(s) 902
PvuII CAGCTG 1 cut(s) 984
RsaI GTAC 2 cut(s) 441, 776
RsaNI GTAC 2 cut(s) 440, 775
SalI GTCGAC 3 cut(s) 323, 922, 974
SaqAI TTAA 2 cut(s) 143, 657
Sau3AI GATC 5 cut(s) 51, 306, 343, 385, 699
Sau96I GGNCC 2 cut(s) 245, 787
SchI GAGTC 4 cut(s) 291, 327, 515, 981
ScrFI CCNGG 5 cut(s) 341, 359, 392, 768, 807
SduI GDGCHC 2 cut(s) 366, 731
SfaNI GCATC 1 cut(s) 631
SfcI CTRYAG 1 cut(s) 240
Sfr274I CTCGAG 1 cut(s) 752
SgrDI CGTCGACG 1 cut(s) 323
SinI GGWCC 2 cut(s) 245, 787
SlaI CTCGAG 1 cut(s) 752
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
Sse9I AATT 2 cut(s) 13, 185
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 5 cut(s) 339, 357, 390, 766, 805
TaaI ACNGT 2 cut(s) 551, 568
TaiI ACGT 5 cut(s) 441, 518, 615, 776, 960
TaqI TCGA 6 cut(s) 324, 702, 753, 851, 923, 975
TasI AATT 2 cut(s) 13, 185
TauI GCSGC 6 cut(s) 314, 685, 819, 843, 990, 993
Tru1I TTAA 2 cut(s) 143, 657
Tru9I TTAA 2 cut(s) 143, 657
TseFI GTSAC 1 cut(s) 958
TseI GCWGC 8 cut(s) 233, 236, 495, 819, 831, 888, 891, 984
Tsp45I GTSAC 1 cut(s) 958
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 902
VpaK11BI GGWCC 2 cut(s) 245, 787
XhoI CTCGAG 1 cut(s) 752
XmiI GTMKAC 4 cut(s) 324, 570, 923, 975
XspI CTAG 1 cut(s) 251
ZraI GACGTC 2 cut(s) 613, 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.