Rh7DG138400

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011713
Physical Location & Seq
Forward (+)
11744727 .. 11745647
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG138400.1

Sequence Viewer

Length: 825 bp
ATGCAGACCAGTAGCGCCGCTGCGAGTTCGTTAACCTCGCTCTCTCCCAGCTTCAACGCCTACTCTTCCTCCGACAGCCTTGCTCAGATCGCCGCCCGCGTCGTCAGCGAGTTTCGTCAAGAACTCGATGAGGCAGGTTTGGAAGACATTGATGATCTGTATGATAACAACAACGACGCGCAATTCTCACCGCCGCGAGAGGGAGAGGCGCCGACGTCGCCGATTGCGGCGGAGGAGGTTTTTTATAACGGTCAGATCAGGCCGGTATACCCGGTCTTCGACCAGAGCTTGCTTCTCCAAAACGACGACGACCTTGAATCCGACTCTACTCATGCCGTGAATACAGATTCCGAGATGTTAGCCTCGACGGTTACGAAGCCGCGTCGGCAGCCGCTAAGAATGCTCATGATAGAGGAGGAGCGCGAGGCCGCGTCCTGCTCGTCTTCCGAGGCCGACGACCTGGAGAACTTGCCACCTGGCACTTACTGCGTGTGGGCCCCGCCCAAGGCTTCCAGAAGAAGCGGCGGCGGCGGCGGTTGCGATAAGAGCAGCTCGACCGGGTCGTCGAAGCGGTGGAAGTTTCGGGACCTTCTTTCTCGGAGCAGTAGCGACGGCGGCAAGGACACTCTCGTCTTTTTTGCTCCGACGACGACGACCAAGACCGCAGAGAAGGAGGGCAGTAACGTCGTAGTCGCGCGGAAAGGGAAGAGCAGCAAAGCAGTGGCTGATGGGGATAAACGGCGGTCGTTTCTGCCATACAGGCAGGACCTGGTGGGGTTTTTCTCTAATGTGAATGGGCTTAGTAGGAATTTGCATCCGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

274

Amino Acids

29.74

Weight (kDa)

4.85

Isoelectric Point (pI)

67.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 77 - 242 1.4e-24 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011713)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62770
fragaria_vesca FvH4_5g05310
malus_domestica MD14G1180400.v1.1
prunus_persica Prupe.5G173800_v2.0.a1 Prupe.5G173800_v2.0.a1
pyrus_communis pycom06g15510 pycom14g15040
rosa_chinensis RchiOBHm_Chr7g0193551
rosa_laevigata RLG00000004263
rosa_multiflora Rmu_sc0000282.1_g000001 Rmu_sc0041282.1_g000001 Rmu_ssc0000035.1_g000002
rosa_roxburghii Rroxscaffold_3G00262010
rosa_rugosa Rorug07G0010200
rosa_samantha Rh7AG137000 Rh7BG137300 Rh7CG140600 Rh7DG138400
rosa_wichuraiana Rw7G011670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AasI GACNNNNNNGTC 2 cut(s) 562, 629
AatII GACGTC 1 cut(s) 218
Acc36I ACCTGC 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 208
AccI GTMKAC 1 cut(s) 267
AccII CGCG 8 cut(s) 99, 179, 196, 382, 423, 431, 695, 697
AcsI RAATTY 1 cut(s) 808
AcyI GRCGYC 2 cut(s) 209, 215
AfiI CCNNNNNNNGG 2 cut(s) 200, 505
AgsI TTSAA 2 cut(s) 55, 317
AjnI CCWGG 3 cut(s) 459, 475, 768
AluBI AGCT 3 cut(s) 51, 288, 552
AluI AGCT 3 cut(s) 51, 288, 552
AlwNI CAGNNNCTG 2 cut(s) 725, 769
AoxI GGCC 4 cut(s) 260, 426, 450, 495
ApaI GGGCCC 1 cut(s) 499
ApeKI GCWGC 4 cut(s) 20, 388, 549, 711
ApoI RAATTY 1 cut(s) 808
AspLEI GCGC 5 cut(s) 17, 181, 211, 423, 697
AspS9I GGNCC 4 cut(s) 495, 496, 586, 766
AsuC2I CCSGG 2 cut(s) 272, 559
AsuHPI GGTGA 1 cut(s) 180
AvaII GGWCC 2 cut(s) 586, 766
BaeGI GKGCMC 1 cut(s) 499
BanI GGYRCC 1 cut(s) 208
BanII GRGCYC 1 cut(s) 499
BbsI GAAGAC 3 cut(s) 150, 268, 435
BbvI GCAGC 4 cut(s) 7, 400, 561, 723
BccI CCATC 1 cut(s) 722
BceAI ACGGC 3 cut(s) 320, 628, 755
BcgI CGANNNNNNTGC 4 cut(s) 62, 96, 667, 701
BciT130I CCWGG 3 cut(s) 461, 477, 770
BcnI CCSGG 2 cut(s) 272, 559
BfoI RGCGCY 2 cut(s) 18, 212
BfuAI ACCTGC 1 cut(s) 125
BglI GCCNNNNNGGC 2 cut(s) 385, 760
Bme1390I CCNGG 5 cut(s) 272, 461, 477, 559, 770
Bme18I GGWCC 2 cut(s) 586, 766
BmgT120I GGNCC 4 cut(s) 495, 496, 586, 766
BmiI GGNNCC 4 cut(s) 210, 497, 498, 587
BmrFI CCNGG 5 cut(s) 272, 461, 477, 559, 770
BpiI GAAGAC 3 cut(s) 150, 268, 435
BpmI CTGGAG 1 cut(s) 482
BpuMI CCSGG 2 cut(s) 272, 559
BsaHI GRCGYC 2 cut(s) 209, 215
BsaJI CCNNGG 2 cut(s) 447, 504
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 505
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 9
BseBI CCWGG 3 cut(s) 461, 477, 770
BseDI CCNNGG 2 cut(s) 447, 504
BseGI GGATG 1 cut(s) 814
BseLI CCNNNNNNNGG 2 cut(s) 200, 505
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 9
BseRI GAGGAG 3 cut(s) 248, 428, 431
BseSI GKGCMC 1 cut(s) 499
BseXI GCAGC 4 cut(s) 7, 400, 561, 723
BseYI CCCAGC 1 cut(s) 47
Bsh1236I CGCG 8 cut(s) 99, 179, 196, 382, 423, 431, 695, 697
Bsh1285I CGRYCG 2 cut(s) 558, 746
BshFI GGCC 4 cut(s) 262, 428, 452, 497
BshNI GGYRCC 1 cut(s) 208
BsiEI CGRYCG 2 cut(s) 558, 746
BsiSI CCGG 3 cut(s) 263, 272, 558
BslFI GGGAC 1 cut(s) 599
BslI CCNNNNNNNGG 2 cut(s) 200, 505
BsmFI GGGAC 1 cut(s) 599
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 4 cut(s) 262, 428, 452, 497
Bsp120I GGGCCC 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 3 cut(s) 87, 154, 255
BspANI GGCC 4 cut(s) 262, 428, 452, 497
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 8 cut(s) 99, 179, 196, 382, 423, 431, 695, 697
BspHI TCATGA 1 cut(s) 405
BspLI GGNNCC 4 cut(s) 210, 497, 498, 587
BspMI ACCTGC 1 cut(s) 125
BspQI GCTCTTC 1 cut(s) 701
BspT107I GGYRCC 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 262
BsrI ACTGG 1 cut(s) 9
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 447, 504
BssMI GATC 3 cut(s) 87, 154, 255
BssNAI GTATAC 1 cut(s) 268
BssNI GRCGYC 2 cut(s) 209, 215
BssT1I CCWWGG 1 cut(s) 504
Bst1107I GTATAC 1 cut(s) 268
Bst2UI CCWGG 3 cut(s) 461, 477, 770
Bst4CI ACNGT 2 cut(s) 251, 370
Bst6I CTCTTC 2 cut(s) 70, 701
BstACI GRCGYC 2 cut(s) 209, 215
BstAPI GCANNNNNTGC 1 cut(s) 486
BstC8I GCNNGC 2 cut(s) 97, 290
BstDEI CTNAG 3 cut(s) 84, 395, 800
BstF5I GGATG 1 cut(s) 814
BstFNI CGCG 8 cut(s) 99, 179, 196, 382, 423, 431, 695, 697
BstH2I RGCGCY 2 cut(s) 18, 212
BstHHI GCGC 5 cut(s) 17, 181, 211, 423, 697
BstKTI GATC 3 cut(s) 90, 157, 258
BstMBI GATC 3 cut(s) 87, 154, 255
BstMCI CGRYCG 2 cut(s) 558, 746
BstNI CCWGG 3 cut(s) 461, 477, 770
BstSCI CCNGG 5 cut(s) 270, 459, 475, 557, 768
BstSLI GKGCMC 1 cut(s) 499
BstUI CGCG 8 cut(s) 99, 179, 196, 382, 423, 431, 695, 697
BstV1I GCAGC 4 cut(s) 7, 400, 561, 723
BstV2I GAAGAC 3 cut(s) 150, 268, 435
BstZ17I GTATAC 1 cut(s) 268
BsuRI GGCC 4 cut(s) 262, 428, 452, 497
BtsCI GGATG 1 cut(s) 814
BtsI GCAGTG 1 cut(s) 726
BtsIMutI CAGTG 1 cut(s) 726
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 2 cut(s) 97, 290
CaiI CAGNNNCTG 2 cut(s) 725, 769
CciI TCATGA 1 cut(s) 405
CfoI GCGC 5 cut(s) 17, 181, 211, 423, 697
Cfr10I RCCGGY 1 cut(s) 262
Cfr13I GGNCC 4 cut(s) 495, 496, 586, 766
CseI GACGC 4 cut(s) 88, 185, 371, 420
CsiI ACCWGGT 1 cut(s) 768
CviAII CATG 2 cut(s) 332, 406
DdeI CTNAG 3 cut(s) 84, 395, 800
DinI GGCGCC 1 cut(s) 210
DpnI GATC 3 cut(s) 89, 156, 257
DpnII GATC 3 cut(s) 87, 154, 255
DrdI GACNNNNNNGTC 2 cut(s) 562, 629
DseDI GACNNNNNNGTC 2 cut(s) 562, 629
Eam1104I CTCTTC 2 cut(s) 70, 701
EarI CTCTTC 2 cut(s) 70, 701
EciI GGCGGA 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 1 cut(s) 499
Eco47I GGWCC 2 cut(s) 586, 766
EcoO109I RGGNCCY 3 cut(s) 496, 586, 766
EcoRII CCWGG 3 cut(s) 459, 475, 768
EcoT14I CCWWGG 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 499
EgeI GGCGCC 1 cut(s) 210
EheI GGCGCC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 504
FaeI CATG 2 cut(s) 335, 409
FaiI YATR 6 cut(s) 162, 246, 268, 333, 407, 757
FaqI GGGAC 1 cut(s) 599
FatI CATG 2 cut(s) 331, 405
FauI CCCGC 2 cut(s) 104, 507
FblI GTMKAC 1 cut(s) 267
FokI GGATG 1 cut(s) 801
FriOI GRGCYC 1 cut(s) 499
GlaI GCGC 5 cut(s) 16, 180, 210, 422, 696
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 482
HaeII RGCGCY 2 cut(s) 18, 212
HaeIII GGCC 4 cut(s) 262, 428, 452, 497
HapII CCGG 3 cut(s) 263, 272, 558
HgaI GACGC 4 cut(s) 88, 185, 371, 420
HhaI GCGC 5 cut(s) 17, 181, 211, 423, 697
Hin1I GRCGYC 2 cut(s) 209, 215
Hin1II CATG 2 cut(s) 335, 409
Hin6I GCGC 5 cut(s) 15, 179, 209, 421, 695
HinP1I GCGC 5 cut(s) 15, 179, 209, 421, 695
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 3 cut(s) 317, 323, 347
HpaI GTTAAC 1 cut(s) 33
HpaII CCGG 3 cut(s) 263, 272, 558
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 2 cut(s) 33, 268
Hpy188I TCNGA 9 cut(s) 73, 87, 255, 322, 352, 448, 600, 645, 824
Hpy188III TCNNGA 4 cut(s) 119, 406, 513, 584
Hpy8I GTNNAC 2 cut(s) 33, 268
HpyAV CCTTC 2 cut(s) 599, 664
HpyCH4III ACNGT 2 cut(s) 251, 370
HpyCH4IV ACGT 2 cut(s) 215, 684
HpyCH4V TGCA 2 cut(s) 4, 814
HpyF3I CTNAG 3 cut(s) 84, 395, 800
HpySE526I ACGT 2 cut(s) 215, 684
Hsp92I GRCGYC 2 cut(s) 209, 215
Hsp92II CATG 2 cut(s) 335, 409
HspAI GCGC 5 cut(s) 15, 179, 209, 421, 695
KasI GGCGCC 1 cut(s) 208
KspAI GTTAAC 1 cut(s) 33
Kzo9I GATC 3 cut(s) 87, 154, 255
LguI GCTCTTC 1 cut(s) 701
LmnI GCTCC 3 cut(s) 418, 600, 646
Lsp1109I GCAGC 4 cut(s) 7, 400, 561, 723
MabI ACCWGGT 1 cut(s) 768
MaeII ACGT 2 cut(s) 215, 684
MaeIII GTNAC 2 cut(s) 370, 680
MalI GATC 3 cut(s) 89, 156, 257
MboI GATC 3 cut(s) 87, 154, 255
MboII GAAGA 6 cut(s) 57, 155, 268, 435, 528, 718
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 2 cut(s) 182, 808
Mly113I GGCGCC 1 cut(s) 209
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 3 cut(s) 96, 345, 668
MseI TTAA 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 3 cut(s) 263, 272, 558
MspR9I CCNGG 5 cut(s) 272, 461, 477, 559, 770
Mva1269I GAATGC 1 cut(s) 405
MvaI CCWGG 3 cut(s) 461, 477, 770
MvnI CGCG 8 cut(s) 99, 179, 196, 382, 423, 431, 695, 697
NarI GGCGCC 1 cut(s) 209
NciI CCSGG 2 cut(s) 272, 559
NdeII GATC 3 cut(s) 87, 154, 255
NlaIII CATG 2 cut(s) 335, 409
NlaIV GGNNCC 4 cut(s) 210, 497, 498, 587
PagI TCATGA 1 cut(s) 405
PciSI GCTCTTC 1 cut(s) 701
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 371, 560
PctI GAATGC 1 cut(s) 405
PfeI GAWTC 2 cut(s) 317, 347
PflFI GACNNNGTC 1 cut(s) 559
PleI GAGTC 1 cut(s) 317
PluTI GGCGCC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 317
PpuMI RGGWCCY 2 cut(s) 586, 766
PsiI TTATAA 1 cut(s) 246
Psp5II RGGWCCY 2 cut(s) 586, 766
Psp6I CCWGG 3 cut(s) 459, 475, 768
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 3 cut(s) 459, 475, 768
PspN4I GGNNCC 4 cut(s) 210, 497, 498, 587
PspOMI GGGCCC 1 cut(s) 495
PspPI GGNCC 4 cut(s) 495, 496, 586, 766
PspPPI RGGWCCY 2 cut(s) 586, 766
PstNI CAGNNNCTG 2 cut(s) 725, 769
PsyI GACNNNGTC 1 cut(s) 559
SapI GCTCTTC 1 cut(s) 701
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 3 cut(s) 87, 154, 255
Sau96I GGNCC 4 cut(s) 495, 496, 586, 766
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 5 cut(s) 272, 461, 477, 559, 770
SduI GDGCHC 1 cut(s) 499
SexAI ACCWGGT 1 cut(s) 768
SfoI GGCGCC 1 cut(s) 210
SinI GGWCC 2 cut(s) 586, 766
Sse9I AATT 2 cut(s) 182, 808
SspDI GGCGCC 1 cut(s) 208
StyD4I CCNGG 5 cut(s) 270, 459, 475, 557, 768
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 2 cut(s) 251, 370
TaiI ACGT 2 cut(s) 218, 687
TaqI TCGA 5 cut(s) 126, 279, 365, 554, 566
TasI AATT 2 cut(s) 182, 808
TfiI GAWTC 2 cut(s) 317, 347
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 1 cut(s) 726
TseI GCWGC 4 cut(s) 20, 388, 549, 711
TspGWI ACGGA 1 cut(s) 807
TspRI CASTG 1 cut(s) 726
Tth111I GACNNNGTC 1 cut(s) 559
VpaK11BI GGWCC 2 cut(s) 586, 766
XapI RAATTY 1 cut(s) 808
XmiI GTMKAC 1 cut(s) 267
ZraI GACGTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.