RchiOBHm_Chr7g0193551

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011713
Physical Location & Seq
Forward (+)
11847859 .. 11848812
954 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17308

Sequence Viewer

Length: 921 bp
ATGCAGACCAGTAGCGCCGCTGCGAGTTCGTTAACCTCGCTCTCTCCCAGCTTCAACGCCTACTCTTCCTCCGACAGCCTCGCTCAGATCGCCGCCCGCGTCGTCAGCGAGTTTCGTCAAGAACTCGATGAGGCAGGTTTGGAAGACATTGATGATCTGTATGATAACAACAACGACGCGCAATTCTCACCGCCGCGGTTGGAAGCTCAACAAGAGGCTGAAAACGACCACGTAAAGGAGGCGGCCGATGAGGAAGAAGAGGAGGAGGAGTTTGAGTTCGCTTTTGTGTGCAGAGAGGGAGAGGCGCCGACGTCGCCGATTGCGGCGGAGGAGGTTTTTTATAACGGCCAGATCAGGCCGGTATACCCGGTCTTCGACCAGAGCTTGCTTCTCCAAAACGACGACGACCTTGAATCCGACTCTTCTCATGCCGTGAATACAGATTCCGAGATGTTAGCCTCGACGGTTACGAAGCCGCGCCGTCAGCCGCTACGAATGCTCATGATCGAGGAGGAGCGCGAGGCCGCGTCCTGCTCGTCTTCCGAGGCCGACGACCTGGAGAACTTGCCACCTGGCACTTACTGCGTGTGGGCCCCGCCCAAGGCTTCCAGAAGAAGCGGCGGCGGCGGCGGTTGCGATAAGAGCAGCTCGACCGGGTCGTCGAAGCGGTGGAAGTTTCGGGACCTTCTTTCTCGGAGCAGTAGCGACGGCGGCAAGGACACTCTCGTCTTTTTTGCTCCGACGACGACGACCAAGACCGCAGAGAAGGAGGGCAGTAACGTCGTAGTCGCGCGGAAAGGGAAGAGCAGCAAAGCAGTGGCTGATGGGGATAAACGGCGGTCGTTTCTGCCATACAGGCAGGACCTGGTGGGGTTTTTCTCTAATGTGAATGGGCTTAGTAGGAATTTGCATCCGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

306

Amino Acids

33.51

Weight (kDa)

4.55

Isoelectric Point (pI)

69.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 109 - 274 2.4e-24 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011713)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62770
fragaria_vesca FvH4_5g05310
malus_domestica MD14G1180400.v1.1
prunus_persica Prupe.5G173800_v2.0.a1 Prupe.5G173800_v2.0.a1
pyrus_communis pycom06g15510 pycom14g15040
rosa_chinensis RchiOBHm_Chr7g0193551
rosa_laevigata RLG00000004263
rosa_multiflora Rmu_sc0000282.1_g000001 Rmu_sc0041282.1_g000001 Rmu_ssc0000035.1_g000002
rosa_roxburghii Rroxscaffold_3G00262010
rosa_rugosa Rorug07G0010200
rosa_samantha Rh7AG137000 Rh7BG137300 Rh7CG140600 Rh7DG138400
rosa_wichuraiana Rw7G011670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
AasI GACNNNNNNGTC 2 cut(s) 658, 725
AatII GACGTC 1 cut(s) 314
Acc36I ACCTGC 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 304
AccI GTMKAC 1 cut(s) 363
AccII CGCG 8 cut(s) 99, 179, 196, 478, 519, 527, 791, 793
AcoI YGGCCR 2 cut(s) 243, 346
AcsI RAATTY 1 cut(s) 904
AcyI GRCGYC 2 cut(s) 305, 311
AfiI CCNNNNNNNGG 2 cut(s) 235, 601
AgsI TTSAA 2 cut(s) 55, 413
AjnI CCWGG 3 cut(s) 555, 571, 864
AloI GAACNNNNNNTCC 2 cut(s) 260, 292
AluBI AGCT 4 cut(s) 51, 206, 384, 648
AluI AGCT 4 cut(s) 51, 206, 384, 648
AlwNI CAGNNNCTG 2 cut(s) 821, 865
AoxI GGCC 6 cut(s) 243, 346, 356, 522, 546, 591
ApaI GGGCCC 1 cut(s) 595
ApeKI GCWGC 3 cut(s) 20, 645, 807
ApoI RAATTY 1 cut(s) 904
AspLEI GCGC 6 cut(s) 17, 181, 307, 480, 519, 793
AspS9I GGNCC 4 cut(s) 591, 592, 682, 862
AsuC2I CCSGG 2 cut(s) 368, 655
AsuHPI GGTGA 1 cut(s) 180
AvaII GGWCC 2 cut(s) 682, 862
BaeGI GKGCMC 1 cut(s) 595
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 595
BbsI GAAGAC 3 cut(s) 150, 364, 531
BbvI GCAGC 3 cut(s) 7, 657, 819
BccI CCATC 1 cut(s) 818
BceAI ACGGC 5 cut(s) 361, 416, 465, 724, 851
BcgI CGANNNNNNTGC 2 cut(s) 763, 797
BciT130I CCWGG 3 cut(s) 557, 573, 866
BcnI CCSGG 2 cut(s) 368, 655
BfoI RGCGCY 2 cut(s) 18, 308
BfuAI ACCTGC 1 cut(s) 125
BglI GCCNNNNNGGC 1 cut(s) 856
Bme1390I CCNGG 5 cut(s) 368, 557, 573, 655, 866
Bme18I GGWCC 2 cut(s) 682, 862
BmgT120I GGNCC 4 cut(s) 591, 592, 682, 862
BmiI GGNNCC 4 cut(s) 306, 593, 594, 683
BmrFI CCNGG 5 cut(s) 368, 557, 573, 655, 866
BpiI GAAGAC 3 cut(s) 150, 364, 531
BpmI CTGGAG 1 cut(s) 578
BpuMI CCSGG 2 cut(s) 368, 655
BsaAI YACGTR 1 cut(s) 232
BsaHI GRCGYC 2 cut(s) 305, 311
BsaJI CCNNGG 3 cut(s) 194, 543, 600
BsaXI ACNNNNNCTCC 6 cut(s) 53, 83, 254, 260, 284, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 601
Bse118I RCCGGY 1 cut(s) 358
Bse1I ACTGG 1 cut(s) 9
BseBI CCWGG 3 cut(s) 557, 573, 866
BseDI CCNNGG 3 cut(s) 194, 543, 600
BseGI GGATG 1 cut(s) 910
BseLI CCNNNNNNNGG 2 cut(s) 235, 601
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 9
BseRI GAGGAG 6 cut(s) 275, 278, 281, 344, 524, 527
BseSI GKGCMC 1 cut(s) 595
BseX3I CGGCCG 1 cut(s) 243
BseXI GCAGC 3 cut(s) 7, 657, 819
BseYI CCCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 310
Bsh1236I CGCG 8 cut(s) 99, 179, 196, 478, 519, 527, 791, 793
Bsh1285I CGRYCG 3 cut(s) 246, 654, 842
BshFI GGCC 6 cut(s) 245, 348, 358, 524, 548, 593
BshNI GGYRCC 1 cut(s) 304
BsiEI CGRYCG 3 cut(s) 246, 654, 842
BsiSI CCGG 3 cut(s) 359, 368, 654
BslFI GGGAC 1 cut(s) 695
BslI CCNNNNNNNGG 2 cut(s) 235, 601
BsmFI GGGAC 1 cut(s) 695
BsmI GAATGC 1 cut(s) 501
BsnI GGCC 6 cut(s) 245, 348, 358, 524, 548, 593
Bsp120I GGGCCC 1 cut(s) 591
Bsp1286I GDGCHC 1 cut(s) 595
Bsp143I GATC 4 cut(s) 87, 154, 351, 504
BspANI GGCC 6 cut(s) 245, 348, 358, 524, 548, 593
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 8 cut(s) 99, 179, 196, 478, 519, 527, 791, 793
BspHI TCATGA 1 cut(s) 501
BspLI GGNNCC 4 cut(s) 306, 593, 594, 683
BspMI ACCTGC 1 cut(s) 125
BspQI GCTCTTC 1 cut(s) 797
BspT107I GGYRCC 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 358
BsrI ACTGG 1 cut(s) 9
BssAI RCCGGY 1 cut(s) 358
BssECI CCNNGG 3 cut(s) 194, 543, 600
BssMI GATC 4 cut(s) 87, 154, 351, 504
BssNAI GTATAC 1 cut(s) 364
BssNI GRCGYC 2 cut(s) 305, 311
BssT1I CCWWGG 1 cut(s) 600
Bst1107I GTATAC 1 cut(s) 364
Bst2UI CCWGG 3 cut(s) 557, 573, 866
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 4 cut(s) 70, 252, 427, 797
BstACI GRCGYC 2 cut(s) 305, 311
BstAPI GCANNNNNTGC 1 cut(s) 582
BstBAI YACGTR 1 cut(s) 232
BstC8I GCNNGC 2 cut(s) 97, 386
BstDEI CTNAG 2 cut(s) 84, 896
BstDSI CCRYGG 1 cut(s) 194
BstF5I GGATG 1 cut(s) 910
BstFNI CGCG 8 cut(s) 99, 179, 196, 478, 519, 527, 791, 793
BstH2I RGCGCY 2 cut(s) 18, 308
BstHHI GCGC 6 cut(s) 17, 181, 307, 480, 519, 793
BstKTI GATC 4 cut(s) 90, 157, 354, 507
BstMBI GATC 4 cut(s) 87, 154, 351, 504
BstMCI CGRYCG 3 cut(s) 246, 654, 842
BstNI CCWGG 3 cut(s) 557, 573, 866
BstSCI CCNGG 5 cut(s) 366, 555, 571, 653, 864
BstSLI GKGCMC 1 cut(s) 595
BstUI CGCG 8 cut(s) 99, 179, 196, 478, 519, 527, 791, 793
BstV1I GCAGC 3 cut(s) 7, 657, 819
BstV2I GAAGAC 3 cut(s) 150, 364, 531
BstZ17I GTATAC 1 cut(s) 364
BstZI CGGCCG 1 cut(s) 243
BsuRI GGCC 6 cut(s) 245, 348, 358, 524, 548, 593
BtgI CCRYGG 1 cut(s) 194
BtsCI GGATG 1 cut(s) 910
BtsI GCAGTG 1 cut(s) 822
BtsIMutI CAGTG 1 cut(s) 822
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 2 cut(s) 97, 386
CaiI CAGNNNCTG 2 cut(s) 821, 865
CciI TCATGA 1 cut(s) 501
CfoI GCGC 6 cut(s) 17, 181, 307, 480, 519, 793
Cfr10I RCCGGY 1 cut(s) 358
Cfr13I GGNCC 4 cut(s) 591, 592, 682, 862
Cfr42I CCGCGG 1 cut(s) 197
CseI GACGC 3 cut(s) 88, 185, 516
CsiI ACCWGGT 1 cut(s) 864
CviAII CATG 2 cut(s) 428, 502
DdeI CTNAG 2 cut(s) 84, 896
DinI GGCGCC 1 cut(s) 306
DpnI GATC 4 cut(s) 89, 156, 353, 506
DpnII GATC 4 cut(s) 87, 154, 351, 504
DrdI GACNNNNNNGTC 2 cut(s) 658, 725
DseDI GACNNNNNNGTC 2 cut(s) 658, 725
EaeI YGGCCR 2 cut(s) 243, 346
EagI CGGCCG 1 cut(s) 243
Eam1104I CTCTTC 4 cut(s) 70, 252, 427, 797
EarI CTCTTC 4 cut(s) 70, 252, 427, 797
EciI GGCGGA 1 cut(s) 341
EclXI CGGCCG 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 600
Eco24I GRGCYC 1 cut(s) 595
Eco47I GGWCC 2 cut(s) 682, 862
Eco52I CGGCCG 1 cut(s) 243
EcoO109I RGGNCCY 3 cut(s) 592, 682, 862
EcoRII CCWGG 3 cut(s) 555, 571, 864
EcoT14I CCWWGG 1 cut(s) 600
EcoT38I GRGCYC 1 cut(s) 595
EgeI GGCGCC 1 cut(s) 306
EheI GGCGCC 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 600
FaeI CATG 2 cut(s) 431, 505
FaiI YATR 6 cut(s) 162, 342, 364, 429, 503, 853
FaqI GGGAC 1 cut(s) 695
FatI CATG 2 cut(s) 427, 501
FauI CCCGC 2 cut(s) 104, 603
FblI GTMKAC 1 cut(s) 363
FokI GGATG 1 cut(s) 897
FriOI GRGCYC 1 cut(s) 595
GlaI GCGC 6 cut(s) 16, 180, 306, 479, 518, 792
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 578
HaeII RGCGCY 2 cut(s) 18, 308
HaeIII GGCC 6 cut(s) 245, 348, 358, 524, 548, 593
HapII CCGG 3 cut(s) 359, 368, 654
HgaI GACGC 3 cut(s) 88, 185, 516
HhaI GCGC 6 cut(s) 17, 181, 307, 480, 519, 793
Hin1I GRCGYC 2 cut(s) 305, 311
Hin1II CATG 2 cut(s) 431, 505
Hin6I GCGC 6 cut(s) 15, 179, 305, 478, 517, 791
HinP1I GCGC 6 cut(s) 15, 179, 305, 478, 517, 791
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 3 cut(s) 413, 419, 443
HpaI GTTAAC 1 cut(s) 33
HpaII CCGG 3 cut(s) 359, 368, 654
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 2 cut(s) 33, 364
Hpy188I TCNGA 8 cut(s) 73, 87, 418, 448, 544, 696, 741, 920
Hpy188III TCNNGA 4 cut(s) 119, 502, 609, 680
Hpy8I GTNNAC 2 cut(s) 33, 364
HpyAV CCTTC 2 cut(s) 695, 760
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4IV ACGT 3 cut(s) 231, 311, 780
HpyCH4V TGCA 3 cut(s) 4, 291, 910
HpyF3I CTNAG 2 cut(s) 84, 896
HpySE526I ACGT 3 cut(s) 231, 311, 780
Hsp92I GRCGYC 2 cut(s) 305, 311
Hsp92II CATG 2 cut(s) 431, 505
HspAI GCGC 6 cut(s) 15, 179, 305, 478, 517, 791
KasI GGCGCC 1 cut(s) 304
KspAI GTTAAC 1 cut(s) 33
KspI CCGCGG 1 cut(s) 197
Kzo9I GATC 4 cut(s) 87, 154, 351, 504
LguI GCTCTTC 1 cut(s) 797
LmnI GCTCC 3 cut(s) 514, 696, 742
Lsp1109I GCAGC 3 cut(s) 7, 657, 819
MabI ACCWGGT 1 cut(s) 864
MaeII ACGT 3 cut(s) 231, 311, 780
MaeIII GTNAC 2 cut(s) 466, 776
MalI GATC 4 cut(s) 89, 156, 353, 506
MboI GATC 4 cut(s) 87, 154, 351, 504
MboII GAAGA 9 cut(s) 57, 155, 266, 269, 364, 414, 531, 624, 814
MhlI GDGCHC 1 cut(s) 595
MluCI AATT 2 cut(s) 182, 904
Mly113I GGCGCC 1 cut(s) 305
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 4 cut(s) 96, 180, 441, 764
MseI TTAA 1 cut(s) 32
MspA1I CMGCKG 2 cut(s) 20, 196
MspI CCGG 3 cut(s) 359, 368, 654
MspR9I CCNGG 5 cut(s) 368, 557, 573, 655, 866
Mva1269I GAATGC 1 cut(s) 501
MvaI CCWGG 3 cut(s) 557, 573, 866
MvnI CGCG 8 cut(s) 99, 179, 196, 478, 519, 527, 791, 793
NarI GGCGCC 1 cut(s) 305
NciI CCSGG 2 cut(s) 368, 655
NdeII GATC 4 cut(s) 87, 154, 351, 504
NlaIII CATG 2 cut(s) 431, 505
NlaIV GGNNCC 4 cut(s) 306, 593, 594, 683
PagI TCATGA 1 cut(s) 501
PciSI GCTCTTC 1 cut(s) 797
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 467, 656
PctI GAATGC 1 cut(s) 501
PfeI GAWTC 2 cut(s) 413, 443
PflFI GACNNNGTC 1 cut(s) 655
PleI GAGTC 1 cut(s) 413
PluTI GGCGCC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 413
Ppu21I YACGTR 1 cut(s) 232
PpuMI RGGWCCY 2 cut(s) 682, 862
PsiI TTATAA 1 cut(s) 342
Psp5II RGGWCCY 2 cut(s) 682, 862
Psp6I CCWGG 3 cut(s) 555, 571, 864
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 3 cut(s) 555, 571, 864
PspN4I GGNNCC 4 cut(s) 306, 593, 594, 683
PspOMI GGGCCC 1 cut(s) 591
PspPI GGNCC 4 cut(s) 591, 592, 682, 862
PspPPI RGGWCCY 2 cut(s) 682, 862
PstNI CAGNNNCTG 2 cut(s) 821, 865
PsyI GACNNNGTC 1 cut(s) 655
SacII CCGCGG 1 cut(s) 197
SapI GCTCTTC 1 cut(s) 797
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 4 cut(s) 87, 154, 351, 504
Sau96I GGNCC 4 cut(s) 591, 592, 682, 862
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 5 cut(s) 368, 557, 573, 655, 866
SduI GDGCHC 1 cut(s) 595
SexAI ACCWGGT 1 cut(s) 864
SfoI GGCGCC 1 cut(s) 306
Sfr303I CCGCGG 1 cut(s) 197
SgrBI CCGCGG 1 cut(s) 197
SinI GGWCC 2 cut(s) 682, 862
Sse9I AATT 2 cut(s) 182, 904
SspDI GGCGCC 1 cut(s) 304
StyD4I CCNGG 5 cut(s) 366, 555, 571, 653, 864
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 1 cut(s) 466
TaiI ACGT 3 cut(s) 234, 314, 783
TaqI TCGA 6 cut(s) 126, 375, 461, 507, 650, 662
TasI AATT 2 cut(s) 182, 904
TfiI GAWTC 2 cut(s) 413, 443
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 1 cut(s) 822
TseI GCWGC 3 cut(s) 20, 645, 807
TspGWI ACGGA 1 cut(s) 903
TspRI CASTG 1 cut(s) 822
Tth111I GACNNNGTC 1 cut(s) 655
VpaK11BI GGWCC 2 cut(s) 682, 862
XapI RAATTY 1 cut(s) 904
XmiI GTMKAC 1 cut(s) 363
ZraI GACGTC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.