Rmu_sc0041282.1_g000001

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041282.1
OG0011713
Physical Location & Seq
Reverse (-)
2 .. 706
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041282.1_g000001.1.cds

Sequence Viewer

Length: 705 bp
atgcagaccagtagcgccgctgcgagttcgttaacctcgctctctcccagcttcaacgcctactcttcctccgacagcctcgctcagatcgccgcccgcgtcgtcagcgagtttcgtcaagaactcgatgaggcaggtttggaagacattgatgatctgtatgataacaacaacgacgcgcaattctcaccgccgcggttggaagcgcaacaagaggctgaaaacgacgacgtaaaggaggcggcggatgaggaagaagaggaggaggagtttgagttcgcttttgtgtgcagagagggagaggcgccgacgtcgccgattgcggcggaggaggttttttataacggtcagatcaggccggtatacccggtcttcgaccagagcttgcttctccaaaacgacgacgaccttgaatccgactctactcatgccgtgaatacagattccgagatgttagcctcgacggttacgaagccgcgccggcagccgctaagaatgctcatgatcgaggaggagcgcgaggccgcgtcctgctcgtcttccgaggccgacgacctggagaacttgccacctggcacttactgcgtgtgggccccgcccaaggcttccagaagaagcggcggcggcggcggttgcgataagagcagctcgaccgggtcgtcgaagcggtggaagtttcgggaccttctttctcggagcagtagc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

235

Amino Acids

25.79

Weight (kDa)

4.18

Isoelectric Point (pI)

78.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011713)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62770
fragaria_vesca FvH4_5g05310
malus_domestica MD14G1180400.v1.1
prunus_persica Prupe.5G173800_v2.0.a1 Prupe.5G173800_v2.0.a1
pyrus_communis pycom06g15510 pycom14g15040
rosa_chinensis RchiOBHm_Chr7g0193551
rosa_laevigata RLG00000004263
rosa_multiflora Rmu_sc0000282.1_g000001 Rmu_sc0041282.1_g000001 Rmu_ssc0000035.1_g000002
rosa_roxburghii Rroxscaffold_3G00262010
rosa_rugosa Rorug07G0010200
rosa_samantha Rh7AG137000 Rh7BG137300 Rh7CG140600 Rh7DG138400
rosa_wichuraiana Rw7G011670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
AasI GACNNNNNNGTC 1 cut(s) 658
AatII GACGTC 1 cut(s) 314
Acc36I ACCTGC 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 304
AccI GTMKAC 1 cut(s) 363
AccII CGCG 6 cut(s) 99, 179, 196, 478, 519, 527
AcyI GRCGYC 2 cut(s) 305, 311
AfiI CCNNNNNNNGG 1 cut(s) 601
AgsI TTSAA 2 cut(s) 55, 413
AjnI CCWGG 2 cut(s) 555, 571
AloI GAACNNNNNNTCC 2 cut(s) 260, 292
AluBI AGCT 3 cut(s) 51, 384, 648
AluI AGCT 3 cut(s) 51, 384, 648
AoxI GGCC 4 cut(s) 356, 522, 546, 591
ApaI GGGCCC 1 cut(s) 595
ApeKI GCWGC 3 cut(s) 20, 484, 645
AspLEI GCGC 6 cut(s) 17, 181, 208, 307, 480, 519
AspS9I GGNCC 3 cut(s) 591, 592, 682
AsuC2I CCSGG 2 cut(s) 368, 655
AsuHPI GGTGA 1 cut(s) 180
AvaII GGWCC 1 cut(s) 682
BaeGI GKGCMC 1 cut(s) 595
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 595
BbsI GAAGAC 3 cut(s) 150, 364, 531
BbvI GCAGC 3 cut(s) 7, 496, 657
BceAI ACGGC 1 cut(s) 416
BciT130I CCWGG 2 cut(s) 557, 573
BcnI CCSGG 2 cut(s) 368, 655
BfoI RGCGCY 2 cut(s) 18, 308
BfuAI ACCTGC 1 cut(s) 125
BglI GCCNNNNNGGC 1 cut(s) 481
Bme1390I CCNGG 4 cut(s) 368, 557, 573, 655
Bme18I GGWCC 1 cut(s) 682
BmgT120I GGNCC 3 cut(s) 591, 592, 682
BmiI GGNNCC 4 cut(s) 306, 593, 594, 683
BmrFI CCNGG 4 cut(s) 368, 557, 573, 655
BpiI GAAGAC 3 cut(s) 150, 364, 531
BpmI CTGGAG 1 cut(s) 578
BpuMI CCSGG 2 cut(s) 368, 655
BsaHI GRCGYC 2 cut(s) 305, 311
BsaJI CCNNGG 3 cut(s) 194, 543, 600
BsaXI ACNNNNNCTCC 6 cut(s) 53, 83, 254, 260, 284, 290
Bsc4I CCNNNNNNNGG 1 cut(s) 601
Bse118I RCCGGY 2 cut(s) 358, 480
Bse1I ACTGG 1 cut(s) 9
BseBI CCWGG 2 cut(s) 557, 573
BseDI CCNNGG 3 cut(s) 194, 543, 600
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 601
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 9
BseRI GAGGAG 6 cut(s) 275, 278, 281, 344, 524, 527
BseSI GKGCMC 1 cut(s) 595
BseXI GCAGC 3 cut(s) 7, 496, 657
BseYI CCCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 310
Bsh1236I CGCG 6 cut(s) 99, 179, 196, 478, 519, 527
Bsh1285I CGRYCG 1 cut(s) 654
BshFI GGCC 4 cut(s) 358, 524, 548, 593
BshNI GGYRCC 1 cut(s) 304
BsiEI CGRYCG 1 cut(s) 654
BsiSI CCGG 4 cut(s) 359, 368, 481, 654
BslFI GGGAC 1 cut(s) 695
BslI CCNNNNNNNGG 1 cut(s) 601
BsmFI GGGAC 1 cut(s) 695
BsmI GAATGC 1 cut(s) 501
BsnI GGCC 4 cut(s) 358, 524, 548, 593
Bsp120I GGGCCC 1 cut(s) 591
Bsp1286I GDGCHC 1 cut(s) 595
Bsp143I GATC 4 cut(s) 87, 154, 351, 504
BspANI GGCC 4 cut(s) 358, 524, 548, 593
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 6 cut(s) 99, 179, 196, 478, 519, 527
BspHI TCATGA 1 cut(s) 501
BspLI GGNNCC 4 cut(s) 306, 593, 594, 683
BspMI ACCTGC 1 cut(s) 125
BspT107I GGYRCC 1 cut(s) 304
BsrFI RCCGGY 2 cut(s) 358, 480
BsrI ACTGG 1 cut(s) 9
BssAI RCCGGY 2 cut(s) 358, 480
BssECI CCNNGG 3 cut(s) 194, 543, 600
BssMI GATC 4 cut(s) 87, 154, 351, 504
BssNAI GTATAC 1 cut(s) 364
BssNI GRCGYC 2 cut(s) 305, 311
BssT1I CCWWGG 1 cut(s) 600
Bst1107I GTATAC 1 cut(s) 364
Bst2UI CCWGG 2 cut(s) 557, 573
Bst4CI ACNGT 2 cut(s) 347, 466
Bst6I CTCTTC 2 cut(s) 70, 252
BstACI GRCGYC 2 cut(s) 305, 311
BstAPI GCANNNNNTGC 1 cut(s) 582
BstC8I GCNNGC 3 cut(s) 97, 386, 482
BstDEI CTNAG 2 cut(s) 84, 491
BstDSI CCRYGG 1 cut(s) 194
BstF5I GGATG 1 cut(s) 253
BstFNI CGCG 6 cut(s) 99, 179, 196, 478, 519, 527
BstH2I RGCGCY 2 cut(s) 18, 308
BstHHI GCGC 6 cut(s) 17, 181, 208, 307, 480, 519
BstKTI GATC 4 cut(s) 90, 157, 354, 507
BstMBI GATC 4 cut(s) 87, 154, 351, 504
BstMCI CGRYCG 1 cut(s) 654
BstNI CCWGG 2 cut(s) 557, 573
BstSCI CCNGG 4 cut(s) 366, 555, 571, 653
BstSLI GKGCMC 1 cut(s) 595
BstUI CGCG 6 cut(s) 99, 179, 196, 478, 519, 527
BstV1I GCAGC 3 cut(s) 7, 496, 657
BstV2I GAAGAC 3 cut(s) 150, 364, 531
BstZ17I GTATAC 1 cut(s) 364
BsuRI GGCC 4 cut(s) 358, 524, 548, 593
BtgI CCRYGG 1 cut(s) 194
BtsCI GGATG 1 cut(s) 253
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 3 cut(s) 97, 386, 482
CciI TCATGA 1 cut(s) 501
CfoI GCGC 6 cut(s) 17, 181, 208, 307, 480, 519
Cfr10I RCCGGY 2 cut(s) 358, 480
Cfr13I GGNCC 3 cut(s) 591, 592, 682
Cfr42I CCGCGG 1 cut(s) 197
CseI GACGC 3 cut(s) 88, 185, 516
CviAII CATG 2 cut(s) 428, 502
DdeI CTNAG 2 cut(s) 84, 491
DinI GGCGCC 1 cut(s) 306
DpnI GATC 4 cut(s) 89, 156, 353, 506
DpnII GATC 4 cut(s) 87, 154, 351, 504
DrdI GACNNNNNNGTC 1 cut(s) 658
DseDI GACNNNNNNGTC 1 cut(s) 658
Eam1104I CTCTTC 2 cut(s) 70, 252
EarI CTCTTC 2 cut(s) 70, 252
EciI GGCGGA 2 cut(s) 260, 341
Eco130I CCWWGG 1 cut(s) 600
Eco24I GRGCYC 1 cut(s) 595
Eco47I GGWCC 1 cut(s) 682
EcoO109I RGGNCCY 2 cut(s) 592, 682
EcoRII CCWGG 2 cut(s) 555, 571
EcoT14I CCWWGG 1 cut(s) 600
EcoT38I GRGCYC 1 cut(s) 595
EgeI GGCGCC 1 cut(s) 306
EheI GGCGCC 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 600
FaeI CATG 2 cut(s) 431, 505
FaiI YATR 5 cut(s) 162, 342, 364, 429, 503
FaqI GGGAC 1 cut(s) 695
FatI CATG 2 cut(s) 427, 501
FauI CCCGC 2 cut(s) 104, 603
FblI GTMKAC 1 cut(s) 363
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 595
GlaI GCGC 6 cut(s) 16, 180, 207, 306, 479, 518
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 578
HaeII RGCGCY 2 cut(s) 18, 308
HaeIII GGCC 4 cut(s) 358, 524, 548, 593
HapII CCGG 4 cut(s) 359, 368, 481, 654
HgaI GACGC 3 cut(s) 88, 185, 516
HhaI GCGC 6 cut(s) 17, 181, 208, 307, 480, 519
Hin1I GRCGYC 2 cut(s) 305, 311
Hin1II CATG 2 cut(s) 431, 505
Hin6I GCGC 6 cut(s) 15, 179, 206, 305, 478, 517
HinP1I GCGC 6 cut(s) 15, 179, 206, 305, 478, 517
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 3 cut(s) 413, 419, 443
HpaI GTTAAC 1 cut(s) 33
HpaII CCGG 4 cut(s) 359, 368, 481, 654
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 2 cut(s) 33, 364
Hpy188I TCNGA 7 cut(s) 73, 87, 351, 418, 448, 544, 696
Hpy188III TCNNGA 4 cut(s) 119, 502, 609, 680
Hpy8I GTNNAC 2 cut(s) 33, 364
HpyAV CCTTC 1 cut(s) 695
HpyCH4III ACNGT 2 cut(s) 347, 466
HpyCH4IV ACGT 2 cut(s) 231, 311
HpyCH4V TGCA 2 cut(s) 4, 291
HpyF3I CTNAG 2 cut(s) 84, 491
HpySE526I ACGT 2 cut(s) 231, 311
Hsp92I GRCGYC 2 cut(s) 305, 311
Hsp92II CATG 2 cut(s) 431, 505
HspAI GCGC 6 cut(s) 15, 179, 206, 305, 478, 517
KasI GGCGCC 1 cut(s) 304
KroI GCCGGC 1 cut(s) 480
KroNI GCCGGC 1 cut(s) 482
KspAI GTTAAC 1 cut(s) 33
KspI CCGCGG 1 cut(s) 197
Kzo9I GATC 4 cut(s) 87, 154, 351, 504
LmnI GCTCC 2 cut(s) 514, 696
Lsp1109I GCAGC 3 cut(s) 7, 496, 657
MaeII ACGT 2 cut(s) 231, 311
MaeIII GTNAC 1 cut(s) 466
MalI GATC 4 cut(s) 89, 156, 353, 506
MboI GATC 4 cut(s) 87, 154, 351, 504
MboII GAAGA 7 cut(s) 57, 155, 266, 269, 364, 531, 624
MhlI GDGCHC 1 cut(s) 595
MluCI AATT 1 cut(s) 182
Mly113I GGCGCC 1 cut(s) 305
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 3 cut(s) 96, 180, 441
MroNI GCCGGC 1 cut(s) 480
MseI TTAA 1 cut(s) 32
MspA1I CMGCKG 2 cut(s) 20, 196
MspI CCGG 4 cut(s) 359, 368, 481, 654
MspR9I CCNGG 4 cut(s) 368, 557, 573, 655
Mva1269I GAATGC 1 cut(s) 501
MvaI CCWGG 2 cut(s) 557, 573
MvnI CGCG 6 cut(s) 99, 179, 196, 478, 519, 527
NaeI GCCGGC 1 cut(s) 482
NarI GGCGCC 1 cut(s) 305
NciI CCSGG 2 cut(s) 368, 655
NdeII GATC 4 cut(s) 87, 154, 351, 504
NgoMIV GCCGGC 1 cut(s) 480
NlaIII CATG 2 cut(s) 431, 505
NlaIV GGNNCC 4 cut(s) 306, 593, 594, 683
PagI TCATGA 1 cut(s) 501
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 467, 656
PctI GAATGC 1 cut(s) 501
PdiI GCCGGC 1 cut(s) 482
PfeI GAWTC 2 cut(s) 413, 443
PflFI GACNNNGTC 1 cut(s) 655
PleI GAGTC 1 cut(s) 413
PluTI GGCGCC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 413
PpuMI RGGWCCY 1 cut(s) 682
PsiI TTATAA 1 cut(s) 342
Psp5II RGGWCCY 1 cut(s) 682
Psp6I CCWGG 2 cut(s) 555, 571
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 2 cut(s) 555, 571
PspN4I GGNNCC 4 cut(s) 306, 593, 594, 683
PspOMI GGGCCC 1 cut(s) 591
PspPI GGNCC 3 cut(s) 591, 592, 682
PspPPI RGGWCCY 1 cut(s) 682
PsyI GACNNNGTC 1 cut(s) 655
SacII CCGCGG 1 cut(s) 197
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 4 cut(s) 87, 154, 351, 504
Sau96I GGNCC 3 cut(s) 591, 592, 682
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 4 cut(s) 368, 557, 573, 655
SduI GDGCHC 1 cut(s) 595
SfoI GGCGCC 1 cut(s) 306
Sfr303I CCGCGG 1 cut(s) 197
SgrBI CCGCGG 1 cut(s) 197
SinI GGWCC 1 cut(s) 682
Sse9I AATT 1 cut(s) 182
SspDI GGCGCC 1 cut(s) 304
StyD4I CCNGG 4 cut(s) 366, 555, 571, 653
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 2 cut(s) 347, 466
TaiI ACGT 2 cut(s) 234, 314
TaqI TCGA 6 cut(s) 126, 375, 461, 507, 650, 662
TasI AATT 1 cut(s) 182
TfiI GAWTC 2 cut(s) 413, 443
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseI GCWGC 3 cut(s) 20, 484, 645
Tth111I GACNNNGTC 1 cut(s) 655
VpaK11BI GGWCC 1 cut(s) 682
XmiI GTMKAC 1 cut(s) 363
ZraI GACGTC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.