Rroxscaffold_3G00262010

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011713
Physical Location & Seq
Reverse (-)
56121175 .. 56121978
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00262010.1

Sequence Viewer

Length: 735 bp
ATGCAGACCAGTAGCGCCGCTGCGAGTTCGTTAACCTCGCTCTCTCCCAGCTTCAACGCCTACTCTTCCTCCGACCGCCTCGCTCAGATCGCCGCCCGCGTCGTCAGCGAGTTTCGTCAAGAACTCGATGAGGCAGGTTTGGAAGACATTGATGATCTGTATGATAACAACAACGACGCGCAATTCTCACCGCCGAGGTTGGAAGCGCAACAAGAGGCTGAAAACGACGACAGAGGAGAGGCGCCGACGTCGCCGATTGCGGCGGAGGAGGGTTTTTATAACGGTCAGATCAGGACGGTATACCCGGTCTTCGACCAGAGCTTGCTTCTCCAAAACGACGACGACCTTGAATCCGACTCTACTCATGCAGTGAATAAAGATTCCGAGAGGCCGTCGACGGTTATGAAGCCGCGTCGTCAGCCTCTAAGAATGCTCATGATCGAGGAGGAGCGCGACTCACTGCGCGAGGCAGCGTCGTGCTCGTCTTCCGAGGCCGACGACCTGGAGAACCTGCCACCTGGCACTTACTGCGTGTGGGCCCCGCCCAAGGCTTCCGGAAAAGGTAGAGGAAGAAGCGGCGGGGGCTGCGATAAGAGCAGCTCGACCGGGTCGTCGAAGCGGTGGAAGTTTCGGGACCTTCTTTCTCGGAGCAGTAGCGACGGCGCCAGGACACTCTCGTCTTTTTTGCTCCGACGACGACCAAGACCGCAGAGAAGGAGGGCAGTAACGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

244

Amino Acids

26.92

Weight (kDa)

5.0

Isoelectric Point (pI)

76.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 88 - 229 2.5e-18 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011713)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62770
fragaria_vesca FvH4_5g05310
malus_domestica MD14G1180400.v1.1
prunus_persica Prupe.5G173800_v2.0.a1 Prupe.5G173800_v2.0.a1
pyrus_communis pycom06g15510 pycom14g15040
rosa_chinensis RchiOBHm_Chr7g0193551
rosa_laevigata RLG00000004263
rosa_multiflora Rmu_sc0000282.1_g000001 Rmu_sc0041282.1_g000001 Rmu_ssc0000035.1_g000002
rosa_roxburghii Rroxscaffold_3G00262010
rosa_rugosa Rorug07G0010200
rosa_samantha Rh7AG137000 Rh7BG137300 Rh7CG140600 Rh7DG138400
rosa_wichuraiana Rw7G011670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 279
AasI GACNNNNNNGTC 2 cut(s) 610, 676
AatII GACGTC 1 cut(s) 251
Acc36I ACCTGC 2 cut(s) 125, 519
AccB1I GGYRCC 2 cut(s) 241, 662
AccI GTMKAC 2 cut(s) 300, 395
AccII CGCG 5 cut(s) 99, 179, 412, 453, 465
AccIII TCCGGA 1 cut(s) 554
AcyI GRCGYC 3 cut(s) 242, 248, 663
AfiI CCNNNNNNNGG 1 cut(s) 547
AgsI TTSAA 2 cut(s) 55, 350
AjnI CCWGG 3 cut(s) 501, 517, 665
AluBI AGCT 3 cut(s) 51, 321, 600
AluI AGCT 3 cut(s) 51, 321, 600
Alw21I GWGCWC 1 cut(s) 482
Aor13HI TCCGGA 1 cut(s) 554
AoxI GGCC 3 cut(s) 389, 492, 537
ApaI GGGCCC 1 cut(s) 541
ApeKI GCWGC 4 cut(s) 20, 470, 585, 597
AspLEI GCGC 7 cut(s) 17, 181, 208, 244, 453, 465, 665
AspS9I GGNCC 3 cut(s) 537, 538, 634
AsuC2I CCSGG 2 cut(s) 305, 607
AsuHPI GGTGA 1 cut(s) 180
AvaII GGWCC 1 cut(s) 634
BaeGI GKGCMC 1 cut(s) 541
BanI GGYRCC 2 cut(s) 241, 662
BanII GRGCYC 1 cut(s) 541
BbsI GAAGAC 3 cut(s) 150, 301, 477
Bbv12I GWGCWC 1 cut(s) 482
BbvI GCAGC 4 cut(s) 7, 482, 572, 609
BceAI ACGGC 2 cut(s) 376, 676
BcgI CGANNNNNNTGC 1 cut(s) 711
BciT130I CCWGG 3 cut(s) 503, 519, 667
BcnI CCSGG 2 cut(s) 305, 607
BfoI RGCGCY 3 cut(s) 18, 245, 666
BfuAI ACCTGC 2 cut(s) 125, 519
BisI GCNGC 9 cut(s) 18, 21, 93, 261, 410, 471, 577, 586, 598
BlsI GCNGC 9 cut(s) 19, 22, 94, 262, 411, 472, 578, 587, 599
Bme1390I CCNGG 5 cut(s) 305, 503, 519, 607, 667
Bme18I GGWCC 1 cut(s) 634
BmgT120I GGNCC 3 cut(s) 537, 538, 634
BmiI GGNNCC 5 cut(s) 243, 539, 540, 635, 664
BmrFI CCNGG 5 cut(s) 305, 503, 519, 607, 667
BpiI GAAGAC 3 cut(s) 150, 301, 477
BplI GAGNNNNNCTC 2 cut(s) 440, 472
BpmI CTGGAG 1 cut(s) 524
BpuMI CCSGG 2 cut(s) 305, 607
BsaHI GRCGYC 3 cut(s) 242, 248, 663
BsaJI CCNNGG 3 cut(s) 194, 489, 546
BsaWI WCCGGW 1 cut(s) 554
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 547
Bse1I ACTGG 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 554
BseBI CCWGG 3 cut(s) 503, 519, 667
BseDI CCNNGG 3 cut(s) 194, 489, 546
BseLI CCNNNNNNNGG 1 cut(s) 547
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 9
BseRI GAGGAG 4 cut(s) 249, 281, 458, 461
BseSI GKGCMC 1 cut(s) 541
BseXI GCAGC 4 cut(s) 7, 482, 572, 609
BseYI CCCAGC 1 cut(s) 47
Bsh1236I CGCG 5 cut(s) 99, 179, 412, 453, 465
Bsh1285I CGRYCG 2 cut(s) 76, 606
BshFI GGCC 3 cut(s) 391, 494, 539
BshNI GGYRCC 2 cut(s) 241, 662
BsiEI CGRYCG 2 cut(s) 76, 606
BsiHKAI GWGCWC 1 cut(s) 482
BsiSI CCGG 3 cut(s) 305, 555, 606
BslFI GGGAC 1 cut(s) 647
BslI CCNNNNNNNGG 1 cut(s) 547
BsmFI GGGAC 1 cut(s) 647
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 3 cut(s) 391, 494, 539
Bsp120I GGGCCC 1 cut(s) 537
Bsp1286I GDGCHC 2 cut(s) 482, 541
Bsp13I TCCGGA 1 cut(s) 554
Bsp143I GATC 4 cut(s) 87, 154, 288, 438
BspANI GGCC 3 cut(s) 391, 494, 539
BspCNI CTCAG 1 cut(s) 97
BspEI TCCGGA 1 cut(s) 554
BspFNI CGCG 5 cut(s) 99, 179, 412, 453, 465
BspHI TCATGA 1 cut(s) 435
BspLI GGNNCC 5 cut(s) 243, 539, 540, 635, 664
BspMI ACCTGC 2 cut(s) 125, 519
BspT107I GGYRCC 2 cut(s) 241, 662
BsrI ACTGG 1 cut(s) 9
BssECI CCNNGG 3 cut(s) 194, 489, 546
BssMI GATC 4 cut(s) 87, 154, 288, 438
BssNAI GTATAC 1 cut(s) 301
BssNI GRCGYC 3 cut(s) 242, 248, 663
BssT1I CCWWGG 1 cut(s) 546
Bst1107I GTATAC 1 cut(s) 301
Bst2UI CCWGG 3 cut(s) 503, 519, 667
Bst4CI ACNGT 3 cut(s) 284, 298, 400
Bst6I CTCTTC 1 cut(s) 70
BstACI GRCGYC 3 cut(s) 242, 248, 663
BstAPI GCANNNNNTGC 1 cut(s) 528
BstC8I GCNNGC 2 cut(s) 97, 323
BstDEI CTNAG 2 cut(s) 84, 425
BstFNI CGCG 5 cut(s) 99, 179, 412, 453, 465
BstH2I RGCGCY 3 cut(s) 18, 245, 666
BstHHI GCGC 7 cut(s) 17, 181, 208, 244, 453, 465, 665
BstKTI GATC 4 cut(s) 90, 157, 291, 441
BstMBI GATC 4 cut(s) 87, 154, 288, 438
BstMCI CGRYCG 2 cut(s) 76, 606
BstMWI GCNNNNNNNGC 8 cut(s) 89, 105, 250, 418, 528, 582, 585, 594
BstNI CCWGG 3 cut(s) 503, 519, 667
BstSCI CCNGG 5 cut(s) 303, 501, 517, 605, 665
BstSLI GKGCMC 1 cut(s) 541
BstUI CGCG 5 cut(s) 99, 179, 412, 453, 465
BstV1I GCAGC 4 cut(s) 7, 482, 572, 609
BstV2I GAAGAC 3 cut(s) 150, 301, 477
BstZ17I GTATAC 1 cut(s) 301
BsuRI GGCC 3 cut(s) 391, 494, 539
BtsI GCAGTG 2 cut(s) 375, 458
BtsIMutI CAGTG 2 cut(s) 375, 458
BveI ACCTGC 2 cut(s) 125, 519
Cac8I GCNNGC 2 cut(s) 97, 323
CciI TCATGA 1 cut(s) 435
CfoI GCGC 7 cut(s) 17, 181, 208, 244, 453, 465, 665
Cfr13I GGNCC 3 cut(s) 537, 538, 634
CseI GACGC 4 cut(s) 88, 185, 401, 462
CviAII CATG 2 cut(s) 365, 436
DdeI CTNAG 2 cut(s) 84, 425
DinI GGCGCC 2 cut(s) 243, 664
DpnI GATC 4 cut(s) 89, 156, 290, 440
DpnII GATC 4 cut(s) 87, 154, 288, 438
DrdI GACNNNNNNGTC 2 cut(s) 610, 676
DseDI GACNNNNNNGTC 2 cut(s) 610, 676
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
EciI GGCGGA 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 546
Eco24I GRGCYC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 634
EcoO109I RGGNCCY 2 cut(s) 538, 634
EcoRII CCWGG 3 cut(s) 501, 517, 665
EcoT14I CCWWGG 1 cut(s) 546
EcoT38I GRGCYC 1 cut(s) 541
EgeI GGCGCC 2 cut(s) 243, 664
EheI GGCGCC 2 cut(s) 243, 664
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 2 cut(s) 368, 439
FaiI YATR 6 cut(s) 162, 279, 301, 366, 404, 437
FaqI GGGAC 1 cut(s) 647
FatI CATG 2 cut(s) 364, 435
FauI CCCGC 3 cut(s) 104, 549, 572
FblI GTMKAC 2 cut(s) 300, 395
Fnu4HI GCNGC 9 cut(s) 18, 21, 93, 261, 410, 471, 577, 586, 598
FriOI GRGCYC 1 cut(s) 541
Fsp4HI GCNGC 9 cut(s) 18, 21, 93, 261, 410, 471, 577, 586, 598
GlaI GCGC 7 cut(s) 16, 180, 207, 243, 452, 464, 664
GluI GCNGC 9 cut(s) 18, 21, 93, 261, 410, 471, 577, 586, 598
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 524
HaeII RGCGCY 3 cut(s) 18, 245, 666
HaeIII GGCC 3 cut(s) 391, 494, 539
HapII CCGG 3 cut(s) 305, 555, 606
HgaI GACGC 4 cut(s) 88, 185, 401, 462
HhaI GCGC 7 cut(s) 17, 181, 208, 244, 453, 465, 665
Hin1I GRCGYC 3 cut(s) 242, 248, 663
Hin1II CATG 2 cut(s) 368, 439
Hin6I GCGC 7 cut(s) 15, 179, 206, 242, 451, 463, 663
HinP1I GCGC 7 cut(s) 15, 179, 206, 242, 451, 463, 663
HincII GTYRAC 2 cut(s) 33, 396
HindII GTYRAC 2 cut(s) 33, 396
HinfI GANTC 4 cut(s) 350, 356, 380, 455
HpaI GTTAAC 1 cut(s) 33
HpaII CCGG 3 cut(s) 305, 555, 606
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 3 cut(s) 33, 301, 396
Hpy188I TCNGA 8 cut(s) 73, 87, 288, 355, 385, 490, 648, 692
Hpy188III TCNNGA 5 cut(s) 119, 292, 436, 555, 632
Hpy8I GTNNAC 3 cut(s) 33, 301, 396
HpyAV CCTTC 2 cut(s) 647, 708
HpyCH4III ACNGT 3 cut(s) 284, 298, 400
HpyCH4IV ACGT 2 cut(s) 248, 728
HpyCH4V TGCA 2 cut(s) 4, 368
HpyF10VI GCNNNNNNNGC 8 cut(s) 89, 105, 250, 418, 528, 582, 585, 594
HpyF3I CTNAG 2 cut(s) 84, 425
HpySE526I ACGT 2 cut(s) 248, 728
Hsp92I GRCGYC 3 cut(s) 242, 248, 663
Hsp92II CATG 2 cut(s) 368, 439
HspAI GCGC 7 cut(s) 15, 179, 206, 242, 451, 463, 663
KasI GGCGCC 2 cut(s) 241, 662
Kpn2I TCCGGA 1 cut(s) 554
KspAI GTTAAC 1 cut(s) 33
Kzo9I GATC 4 cut(s) 87, 154, 288, 438
LmnI GCTCC 3 cut(s) 448, 648, 693
Lsp1109I GCAGC 4 cut(s) 7, 482, 572, 609
MaeII ACGT 2 cut(s) 248, 728
MaeIII GTNAC 1 cut(s) 724
MalI GATC 4 cut(s) 89, 156, 290, 440
MboI GATC 4 cut(s) 87, 154, 288, 438
MboII GAAGA 5 cut(s) 57, 155, 301, 477, 582
MhlI GDGCHC 2 cut(s) 482, 541
MluCI AATT 1 cut(s) 182
Mly113I GGCGCC 2 cut(s) 242, 663
MlyI GAGTC 2 cut(s) 350, 449
MmeI TCCRAC 4 cut(s) 96, 180, 378, 715
MroI TCCGGA 1 cut(s) 554
MseI TTAA 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 3 cut(s) 305, 555, 606
MspR9I CCNGG 5 cut(s) 305, 503, 519, 607, 667
Mva1269I GAATGC 1 cut(s) 435
MvaI CCWGG 3 cut(s) 503, 519, 667
MvnI CGCG 5 cut(s) 99, 179, 412, 453, 465
MwoI GCNNNNNNNGC 8 cut(s) 89, 105, 250, 418, 528, 582, 585, 594
NarI GGCGCC 2 cut(s) 242, 663
NciI CCSGG 2 cut(s) 305, 607
NdeII GATC 4 cut(s) 87, 154, 288, 438
NlaIII CATG 2 cut(s) 368, 439
NlaIV GGNNCC 5 cut(s) 243, 539, 540, 635, 664
NmeAIII GCCGAG 1 cut(s) 219
PagI TCATGA 1 cut(s) 435
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 608
PctI GAATGC 1 cut(s) 435
PfeI GAWTC 2 cut(s) 350, 380
PflFI GACNNNGTC 1 cut(s) 607
PkrI GCNGC 9 cut(s) 19, 22, 94, 262, 411, 472, 578, 587, 599
PleI GAGTC 2 cut(s) 350, 449
PluTI GGCGCC 2 cut(s) 245, 666
PpsI GAGTC 2 cut(s) 350, 449
PpuMI RGGWCCY 1 cut(s) 634
PsiI TTATAA 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 634
Psp6I CCWGG 3 cut(s) 501, 517, 665
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 3 cut(s) 501, 517, 665
PspN4I GGNNCC 5 cut(s) 243, 539, 540, 635, 664
PspOMI GGGCCC 1 cut(s) 537
PspPI GGNCC 3 cut(s) 537, 538, 634
PspPPI RGGWCCY 1 cut(s) 634
PsyI GACNNNGTC 1 cut(s) 607
SalI GTCGAC 1 cut(s) 394
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 9 cut(s) 18, 21, 93, 261, 410, 471, 577, 586, 598
Sau3AI GATC 4 cut(s) 87, 154, 288, 438
Sau96I GGNCC 3 cut(s) 537, 538, 634
SchI GAGTC 2 cut(s) 350, 449
ScrFI CCNGG 5 cut(s) 305, 503, 519, 607, 667
SduI GDGCHC 2 cut(s) 482, 541
SfoI GGCGCC 2 cut(s) 243, 664
SgrDI CGTCGACG 1 cut(s) 394
SinI GGWCC 1 cut(s) 634
Sse9I AATT 1 cut(s) 182
SspDI GGCGCC 2 cut(s) 241, 662
StyD4I CCNGG 5 cut(s) 303, 501, 517, 605, 665
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 3 cut(s) 284, 298, 400
TaiI ACGT 2 cut(s) 251, 731
TaqI TCGA 6 cut(s) 126, 312, 395, 441, 602, 614
TasI AATT 1 cut(s) 182
TauI GCSGC 5 cut(s) 20, 95, 263, 412, 579
TfiI GAWTC 2 cut(s) 350, 380
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 2 cut(s) 375, 465
TseI GCWGC 4 cut(s) 20, 470, 585, 597
TspDTI ATGAA 1 cut(s) 419
TspRI CASTG 2 cut(s) 375, 465
Tth111I GACNNNGTC 1 cut(s) 607
VpaK11BI GGWCC 1 cut(s) 634
XmiI GTMKAC 2 cut(s) 300, 395
ZraI GACGTC 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.