Rh7BG137300

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011713
Physical Location & Seq
Forward (+)
10233081 .. 10234601
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG137300.1

Sequence Viewer

Length: 939 bp
ATGCAGACCAGTAGCGCCGCTGCGAGTTCGTTAACCTCGCTCTCTCCCAGCTTCAACGCCTACTCTTCCTCCGACCGCCTCGCTCAGATCGCCGCCCGCGTCGTCAGCGAGTTTCGTCAAGAACTCGATGAGGCAGGTTTGGAAGACATTGATGATCTGTATGATAACAACAACGACGCGCAATTCTCACCGCCGCGGTTGGAAGCGCAACAAGAGGCTGAAAACGACGACGTAAAGGAGGCGGCGGATGAGGAGGAGGAGGAGGAGGAGGAGGAGTTTGAGTTCGCTTTTGTGTGCAGAGAGGGAGAGGCGCCGACGTCGCCGATTGCGGCGGAGGAGGTTTTTTATAACGGTCAGATCAGGCCGGTATACCCGGTCTTCGACCAGAGCTTGCTTCTCCAAAACGACGACGACCTTGAATCCGACTCTACTCATGCCGTGAATAAAGATTCCGAGAGGCCGTCGACGGTTACGAAGCCGCGTCGTCAGCCGCTAAGAATGCTCATGATCCAGGAGGAGCGCGAGGCCGCGTCGTGCTCGTCTTCCGAGGCCGACGACCTGGAGAACCTGCCACCTGGCACTTACTGCGTGTGGGCCCCGCCCAAGGCTTCCGGAAAAGGTGGAGGAAGAAGCGGCGGCGGCGGCGGGGGCTGCGATAAGAGCAGCTCGACCGGGTCGTCGAAGCGGTGGAAGTTTCGGGACCTTCTTTCTCGGAGCAGTAGCGACGGCGCCAAGGACACTCTCGTCTTTTTTTCTCCGACGACGACGACCAAGACCGCAGAGAAGGAGGGCAGTAACGTCGTAGTCGCGCGGAAAGGGAAGAGCAGCAAAGCCGTGGCTGATGGGGATAAACGGCGGTCGTTTCTGCCATACAGGCAGGACCTGGTGGGGTTTTTCTCTAATGTGAATGGGCTTAGTAGGAATTTGCATCCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

312

Amino Acids

34.08

Weight (kDa)

4.58

Isoelectric Point (pI)

67.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 111 - 280 5.2e-22 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011713)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62770
fragaria_vesca FvH4_5g05310
malus_domestica MD14G1180400.v1.1
prunus_persica Prupe.5G173800_v2.0.a1 Prupe.5G173800_v2.0.a1
pyrus_communis pycom06g15510 pycom14g15040
rosa_chinensis RchiOBHm_Chr7g0193551
rosa_laevigata RLG00000004263
rosa_multiflora Rmu_sc0000282.1_g000001 Rmu_sc0041282.1_g000001 Rmu_ssc0000035.1_g000002
rosa_roxburghii Rroxscaffold_3G00262010
rosa_rugosa Rorug07G0010200
rosa_samantha Rh7AG137000 Rh7BG137300 Rh7CG140600 Rh7DG138400
rosa_wichuraiana Rw7G011670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
AasI GACNNNNNNGTC 2 cut(s) 676, 743
AatII GACGTC 1 cut(s) 320
Acc36I ACCTGC 2 cut(s) 125, 576
AccB1I GGYRCC 2 cut(s) 310, 728
AccI GTMKAC 2 cut(s) 369, 464
AccII CGCG 8 cut(s) 99, 179, 196, 481, 522, 530, 809, 811
AccIII TCCGGA 1 cut(s) 611
AclWI GGATC 1 cut(s) 502
AcsI RAATTY 1 cut(s) 922
AcyI GRCGYC 3 cut(s) 311, 317, 729
AfiI CCNNNNNNNGG 1 cut(s) 604
AgsI TTSAA 2 cut(s) 55, 419
AjnI CCWGG 4 cut(s) 510, 558, 574, 882
AloI GAACNNNNNNTCC 2 cut(s) 266, 298
AluBI AGCT 3 cut(s) 51, 390, 666
AluI AGCT 3 cut(s) 51, 390, 666
Alw21I GWGCWC 1 cut(s) 539
AlwI GGATC 1 cut(s) 502
AlwNI CAGNNNCTG 1 cut(s) 883
Aor13HI TCCGGA 1 cut(s) 611
AoxI GGCC 5 cut(s) 362, 458, 525, 549, 594
ApaI GGGCCC 1 cut(s) 598
ApeKI GCWGC 4 cut(s) 20, 651, 663, 825
ApoI RAATTY 1 cut(s) 922
AspLEI GCGC 7 cut(s) 17, 181, 208, 313, 522, 731, 811
AspS9I GGNCC 4 cut(s) 594, 595, 700, 880
AsuC2I CCSGG 2 cut(s) 374, 673
AsuHPI GGTGA 1 cut(s) 180
AvaII GGWCC 2 cut(s) 700, 880
BaeGI GKGCMC 1 cut(s) 598
BanI GGYRCC 2 cut(s) 310, 728
BanII GRGCYC 1 cut(s) 598
BbsI GAAGAC 3 cut(s) 150, 370, 534
Bbv12I GWGCWC 1 cut(s) 539
BbvI GCAGC 4 cut(s) 7, 638, 675, 837
BccI CCATC 1 cut(s) 836
BceAI ACGGC 5 cut(s) 422, 445, 742, 818, 869
BcgI CGANNNNNNTGC 2 cut(s) 781, 815
BciT130I CCWGG 4 cut(s) 512, 560, 576, 884
BcnI CCSGG 2 cut(s) 374, 673
BfoI RGCGCY 3 cut(s) 18, 314, 732
BfuAI ACCTGC 2 cut(s) 125, 576
BglI GCCNNNNNGGC 1 cut(s) 874
Bme1390I CCNGG 6 cut(s) 374, 512, 560, 576, 673, 884
Bme18I GGWCC 2 cut(s) 700, 880
BmgT120I GGNCC 4 cut(s) 594, 595, 700, 880
BmiI GGNNCC 5 cut(s) 312, 596, 597, 701, 730
BmrFI CCNGG 6 cut(s) 374, 512, 560, 576, 673, 884
BpiI GAAGAC 3 cut(s) 150, 370, 534
BpmI CTGGAG 1 cut(s) 581
BpuMI CCSGG 2 cut(s) 374, 673
BsaHI GRCGYC 3 cut(s) 311, 317, 729
BsaJI CCNNGG 5 cut(s) 194, 546, 603, 732, 834
BsaWI WCCGGW 1 cut(s) 611
BsaXI ACNNNNNCTCC 6 cut(s) 53, 83, 260, 266, 290, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 604
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 611
BseBI CCWGG 4 cut(s) 512, 560, 576, 884
BseDI CCNNGG 5 cut(s) 194, 546, 603, 732, 834
BseGI GGATG 2 cut(s) 253, 928
BseLI CCNNNNNNNGG 1 cut(s) 604
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 9
BseSI GKGCMC 1 cut(s) 598
BseXI GCAGC 4 cut(s) 7, 638, 675, 837
BseYI CCCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 316
Bsh1236I CGCG 8 cut(s) 99, 179, 196, 481, 522, 530, 809, 811
Bsh1285I CGRYCG 3 cut(s) 76, 672, 860
BshFI GGCC 5 cut(s) 364, 460, 527, 551, 596
BshNI GGYRCC 2 cut(s) 310, 728
BsiEI CGRYCG 3 cut(s) 76, 672, 860
BsiHKAI GWGCWC 1 cut(s) 539
BsiSI CCGG 4 cut(s) 365, 374, 612, 672
BslFI GGGAC 1 cut(s) 713
BslI CCNNNNNNNGG 1 cut(s) 604
BsmFI GGGAC 1 cut(s) 713
BsmI GAATGC 1 cut(s) 504
BsnI GGCC 5 cut(s) 364, 460, 527, 551, 596
Bsp120I GGGCCC 1 cut(s) 594
Bsp1286I GDGCHC 2 cut(s) 539, 598
Bsp13I TCCGGA 1 cut(s) 611
Bsp143I GATC 4 cut(s) 87, 154, 357, 507
BspANI GGCC 5 cut(s) 364, 460, 527, 551, 596
BspCNI CTCAG 1 cut(s) 97
BspEI TCCGGA 1 cut(s) 611
BspFNI CGCG 8 cut(s) 99, 179, 196, 481, 522, 530, 809, 811
BspHI TCATGA 1 cut(s) 504
BspLI GGNNCC 5 cut(s) 312, 596, 597, 701, 730
BspMI ACCTGC 2 cut(s) 125, 576
BspPI GGATC 1 cut(s) 502
BspQI GCTCTTC 1 cut(s) 815
BspT107I GGYRCC 2 cut(s) 310, 728
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 1 cut(s) 9
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 5 cut(s) 194, 546, 603, 732, 834
BssMI GATC 4 cut(s) 87, 154, 357, 507
BssNAI GTATAC 1 cut(s) 370
BssNI GRCGYC 3 cut(s) 311, 317, 729
BssT1I CCWWGG 2 cut(s) 603, 732
Bst1107I GTATAC 1 cut(s) 370
Bst2UI CCWGG 4 cut(s) 512, 560, 576, 884
Bst4CI ACNGT 2 cut(s) 353, 469
Bst6I CTCTTC 2 cut(s) 70, 815
BstACI GRCGYC 3 cut(s) 311, 317, 729
BstAPI GCANNNNNTGC 1 cut(s) 585
BstC8I GCNNGC 2 cut(s) 97, 392
BstDEI CTNAG 3 cut(s) 84, 494, 914
BstDSI CCRYGG 2 cut(s) 194, 834
BstF5I GGATG 2 cut(s) 253, 928
BstFNI CGCG 8 cut(s) 99, 179, 196, 481, 522, 530, 809, 811
BstH2I RGCGCY 3 cut(s) 18, 314, 732
BstHHI GCGC 7 cut(s) 17, 181, 208, 313, 522, 731, 811
BstKTI GATC 4 cut(s) 90, 157, 360, 510
BstMBI GATC 4 cut(s) 87, 154, 357, 507
BstMCI CGRYCG 3 cut(s) 76, 672, 860
BstNI CCWGG 4 cut(s) 512, 560, 576, 884
BstSCI CCNGG 6 cut(s) 372, 510, 558, 574, 671, 882
BstSLI GKGCMC 1 cut(s) 598
BstUI CGCG 8 cut(s) 99, 179, 196, 481, 522, 530, 809, 811
BstV1I GCAGC 4 cut(s) 7, 638, 675, 837
BstV2I GAAGAC 3 cut(s) 150, 370, 534
BstZ17I GTATAC 1 cut(s) 370
BsuRI GGCC 5 cut(s) 364, 460, 527, 551, 596
BtgI CCRYGG 2 cut(s) 194, 834
BtsCI GGATG 2 cut(s) 253, 928
BveI ACCTGC 2 cut(s) 125, 576
Cac8I GCNNGC 2 cut(s) 97, 392
CaiI CAGNNNCTG 1 cut(s) 883
CciI TCATGA 1 cut(s) 504
CfoI GCGC 7 cut(s) 17, 181, 208, 313, 522, 731, 811
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 4 cut(s) 594, 595, 700, 880
Cfr42I CCGCGG 1 cut(s) 197
CseI GACGC 4 cut(s) 88, 185, 470, 519
CsiI ACCWGGT 1 cut(s) 882
CviAII CATG 2 cut(s) 434, 505
DdeI CTNAG 3 cut(s) 84, 494, 914
DinI GGCGCC 2 cut(s) 312, 730
DpnI GATC 4 cut(s) 89, 156, 359, 509
DpnII GATC 4 cut(s) 87, 154, 357, 507
DrdI GACNNNNNNGTC 2 cut(s) 676, 743
DseDI GACNNNNNNGTC 2 cut(s) 676, 743
Eam1104I CTCTTC 2 cut(s) 70, 815
EarI CTCTTC 2 cut(s) 70, 815
EciI GGCGGA 2 cut(s) 260, 347
Eco130I CCWWGG 2 cut(s) 603, 732
Eco24I GRGCYC 1 cut(s) 598
Eco47I GGWCC 2 cut(s) 700, 880
EcoO109I RGGNCCY 3 cut(s) 595, 700, 880
EcoRII CCWGG 4 cut(s) 510, 558, 574, 882
EcoT14I CCWWGG 2 cut(s) 603, 732
EcoT38I GRGCYC 1 cut(s) 598
EgeI GGCGCC 2 cut(s) 312, 730
EheI GGCGCC 2 cut(s) 312, 730
ErhI CCWWGG 2 cut(s) 603, 732
FaeI CATG 2 cut(s) 437, 508
FaiI YATR 6 cut(s) 162, 348, 370, 435, 506, 871
FaqI GGGAC 1 cut(s) 713
FatI CATG 2 cut(s) 433, 504
FauI CCCGC 3 cut(s) 104, 606, 638
FblI GTMKAC 2 cut(s) 369, 464
FokI GGATG 2 cut(s) 260, 915
FriOI GRGCYC 1 cut(s) 598
GlaI GCGC 7 cut(s) 16, 180, 207, 312, 521, 730, 810
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 581
HaeII RGCGCY 3 cut(s) 18, 314, 732
HaeIII GGCC 5 cut(s) 364, 460, 527, 551, 596
HapII CCGG 4 cut(s) 365, 374, 612, 672
HgaI GACGC 4 cut(s) 88, 185, 470, 519
HhaI GCGC 7 cut(s) 17, 181, 208, 313, 522, 731, 811
Hin1I GRCGYC 3 cut(s) 311, 317, 729
Hin1II CATG 2 cut(s) 437, 508
Hin6I GCGC 7 cut(s) 15, 179, 206, 311, 520, 729, 809
HinP1I GCGC 7 cut(s) 15, 179, 206, 311, 520, 729, 809
HincII GTYRAC 2 cut(s) 33, 465
HindII GTYRAC 2 cut(s) 33, 465
HinfI GANTC 3 cut(s) 419, 425, 449
HpaI GTTAAC 1 cut(s) 33
HpaII CCGG 4 cut(s) 365, 374, 612, 672
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 3 cut(s) 33, 370, 465
Hpy188I TCNGA 9 cut(s) 73, 87, 357, 424, 454, 547, 714, 759, 938
Hpy188III TCNNGA 4 cut(s) 119, 505, 612, 698
Hpy8I GTNNAC 3 cut(s) 33, 370, 465
HpyAV CCTTC 2 cut(s) 713, 778
HpyCH4III ACNGT 2 cut(s) 353, 469
HpyCH4IV ACGT 3 cut(s) 231, 317, 798
HpyCH4V TGCA 3 cut(s) 4, 297, 928
HpyF3I CTNAG 3 cut(s) 84, 494, 914
HpySE526I ACGT 3 cut(s) 231, 317, 798
Hsp92I GRCGYC 3 cut(s) 311, 317, 729
Hsp92II CATG 2 cut(s) 437, 508
HspAI GCGC 7 cut(s) 15, 179, 206, 311, 520, 729, 809
KasI GGCGCC 2 cut(s) 310, 728
Kpn2I TCCGGA 1 cut(s) 611
KspAI GTTAAC 1 cut(s) 33
KspI CCGCGG 1 cut(s) 197
Kzo9I GATC 4 cut(s) 87, 154, 357, 507
LguI GCTCTTC 1 cut(s) 815
LmnI GCTCC 2 cut(s) 517, 714
Lsp1109I GCAGC 4 cut(s) 7, 638, 675, 837
MabI ACCWGGT 1 cut(s) 882
MaeII ACGT 3 cut(s) 231, 317, 798
MaeIII GTNAC 2 cut(s) 469, 794
MalI GATC 4 cut(s) 89, 156, 359, 509
MboI GATC 4 cut(s) 87, 154, 357, 507
MboII GAAGA 6 cut(s) 57, 155, 370, 534, 639, 832
MhlI GDGCHC 2 cut(s) 539, 598
MluCI AATT 2 cut(s) 182, 922
Mly113I GGCGCC 2 cut(s) 311, 729
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 4 cut(s) 96, 180, 447, 782
MroI TCCGGA 1 cut(s) 611
MseI TTAA 1 cut(s) 32
MspA1I CMGCKG 2 cut(s) 20, 196
MspI CCGG 4 cut(s) 365, 374, 612, 672
MspR9I CCNGG 6 cut(s) 374, 512, 560, 576, 673, 884
Mva1269I GAATGC 1 cut(s) 504
MvaI CCWGG 4 cut(s) 512, 560, 576, 884
MvnI CGCG 8 cut(s) 99, 179, 196, 481, 522, 530, 809, 811
NarI GGCGCC 2 cut(s) 311, 729
NciI CCSGG 2 cut(s) 374, 673
NdeII GATC 4 cut(s) 87, 154, 357, 507
NlaIII CATG 2 cut(s) 437, 508
NlaIV GGNNCC 5 cut(s) 312, 596, 597, 701, 730
PagI TCATGA 1 cut(s) 504
PciSI GCTCTTC 1 cut(s) 815
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 470, 674
PctI GAATGC 1 cut(s) 504
PfeI GAWTC 2 cut(s) 419, 449
PflFI GACNNNGTC 1 cut(s) 673
PfoI TCCNGGA 1 cut(s) 510
PleI GAGTC 1 cut(s) 419
PluTI GGCGCC 2 cut(s) 314, 732
PpsI GAGTC 1 cut(s) 419
PpuMI RGGWCCY 2 cut(s) 700, 880
PsiI TTATAA 1 cut(s) 348
Psp5II RGGWCCY 2 cut(s) 700, 880
Psp6I CCWGG 4 cut(s) 510, 558, 574, 882
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 4 cut(s) 510, 558, 574, 882
PspN4I GGNNCC 5 cut(s) 312, 596, 597, 701, 730
PspOMI GGGCCC 1 cut(s) 594
PspPI GGNCC 4 cut(s) 594, 595, 700, 880
PspPPI RGGWCCY 2 cut(s) 700, 880
PstNI CAGNNNCTG 1 cut(s) 883
PsyI GACNNNGTC 1 cut(s) 673
SacII CCGCGG 1 cut(s) 197
SalI GTCGAC 1 cut(s) 463
SapI GCTCTTC 1 cut(s) 815
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 4 cut(s) 87, 154, 357, 507
Sau96I GGNCC 4 cut(s) 594, 595, 700, 880
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 6 cut(s) 374, 512, 560, 576, 673, 884
SduI GDGCHC 2 cut(s) 539, 598
SexAI ACCWGGT 1 cut(s) 882
SfoI GGCGCC 2 cut(s) 312, 730
Sfr303I CCGCGG 1 cut(s) 197
SgrBI CCGCGG 1 cut(s) 197
SgrDI CGTCGACG 1 cut(s) 463
SinI GGWCC 2 cut(s) 700, 880
Sse9I AATT 2 cut(s) 182, 922
SspDI GGCGCC 2 cut(s) 310, 728
StyD4I CCNGG 6 cut(s) 372, 510, 558, 574, 671, 882
StyI CCWWGG 2 cut(s) 603, 732
TaaI ACNGT 2 cut(s) 353, 469
TaiI ACGT 3 cut(s) 234, 320, 801
TaqI TCGA 5 cut(s) 126, 381, 464, 668, 680
TasI AATT 2 cut(s) 182, 922
TfiI GAWTC 2 cut(s) 419, 449
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseI GCWGC 4 cut(s) 20, 651, 663, 825
Tth111I GACNNNGTC 1 cut(s) 673
VpaK11BI GGWCC 2 cut(s) 700, 880
XapI RAATTY 1 cut(s) 922
XmiI GTMKAC 2 cut(s) 369, 464
ZraI GACGTC 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.