Rh7AG137000

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011713
Physical Location & Seq
Forward (+)
10956656 .. 10958089
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG137000.1

Sequence Viewer

Length: 936 bp
ATGCAGACCAGTAGCGCCGCTGTGAGTTCGTTAACCTCGCTCTCTCCCAGCTTCAACGCCTACTCTTCCTCCGACAGCCTCGCTCAGATCGCCGCCCGCGTCGTCAGCGAGTTTCGTCAAGAACTCGATGAGGCAGGTTTGGAAGACATTGATGATCTGTATGACAACAACAACGACGCGCAATTCTCACCGCCGAGGTTGGAAGCGCAACAAGAGGCTGAAAACGACGACGTAAAGGAGGCCGCGGATGAGGAAGAAGATGAAGAGGAGGAGGAGGAGGAGTTTGAGTTCGCTTTTGTGTGCAGAGAGGGAGAGGCGCCGACGTCGCCGATTGCGGCGGAGGAGGTTTTTTATAACGGTCAGATCAGGCCGGTATACCCGGTCTTCGACCAGAGCTTGCTTCTCCAAAACGACGACGACCTTGAATCCGACTCTACTCGTGCCGTGAATAAAGATTCCGAGAGGCCGTCGACGGTTACGAAGCCGCGTCGTCAGCCGCTAAGAATGCTCATGATCGAGGAGGAGCGCGAGGCCGCTTCCTGCTCGTCTTCCGAGGCCGACGACCTGGAGAACCTGCCACCTGGCACTTACTGCGTGTGGGCCCCGCCCAAGGCTTCCGGAAGAAGCGGCGGCGGCGGCGGTGGTTGCGATAAGAGCAGCTCGACCGGGTCGTCGAAGCGGTGGAAGTTTCGGGACCTTCTTTCTCGGAGCAGTAGCGACGGCGCCAAGGACACTCTCGTCTTTTTTGCTCCGACGACGACGACGACCAAGACCGCAGAGAAGGAGGGCAGTAACGTCGTAGTAGCGCGGAAAGGGAAGAGCAGCAAAGCCGTGGCTGATGGGGATAAACGGCGGTCGTTTCTGCCATACAGGCAGGACCTGGTGGGGTTTTTCTCTAATGTGAATGGGCTTAGTAGGAATTTGCATCCGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

311

Amino Acids

34.09

Weight (kDa)

4.45

Isoelectric Point (pI)

70.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 113 - 280 1.7e-23 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011713)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62770
fragaria_vesca FvH4_5g05310
malus_domestica MD14G1180400.v1.1
prunus_persica Prupe.5G173800_v2.0.a1 Prupe.5G173800_v2.0.a1
pyrus_communis pycom06g15510 pycom14g15040
rosa_chinensis RchiOBHm_Chr7g0193551
rosa_laevigata RLG00000004263
rosa_multiflora Rmu_sc0000282.1_g000001 Rmu_sc0041282.1_g000001 Rmu_ssc0000035.1_g000002
rosa_roxburghii Rroxscaffold_3G00262010
rosa_rugosa Rorug07G0010200
rosa_samantha Rh7AG137000 Rh7BG137300 Rh7CG140600 Rh7DG138400
rosa_wichuraiana Rw7G011670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 354
AasI GACNNNNNNGTC 2 cut(s) 670, 737
AatII GACGTC 1 cut(s) 326
Acc36I ACCTGC 2 cut(s) 125, 582
AccB1I GGYRCC 2 cut(s) 316, 722
AccI GTMKAC 2 cut(s) 375, 470
AccII CGCG 6 cut(s) 99, 179, 245, 487, 528, 808
AccIII TCCGGA 1 cut(s) 617
AcsI RAATTY 1 cut(s) 919
AcyI GRCGYC 3 cut(s) 317, 323, 723
AfiI CCNNNNNNNGG 1 cut(s) 610
AgsI TTSAA 2 cut(s) 55, 425
AjnI CCWGG 3 cut(s) 564, 580, 879
AloI GAACNNNNNNTCC 2 cut(s) 272, 304
AluBI AGCT 3 cut(s) 51, 396, 660
AluI AGCT 3 cut(s) 51, 396, 660
AlwNI CAGNNNCTG 1 cut(s) 880
Aor13HI TCCGGA 1 cut(s) 617
AoxI GGCC 6 cut(s) 240, 368, 464, 531, 555, 600
ApaI GGGCCC 1 cut(s) 604
ApeKI GCWGC 2 cut(s) 657, 822
ApoI RAATTY 1 cut(s) 919
AspLEI GCGC 7 cut(s) 17, 181, 208, 319, 528, 725, 808
AspS9I GGNCC 4 cut(s) 600, 601, 694, 877
AsuC2I CCSGG 2 cut(s) 380, 667
AsuHPI GGTGA 1 cut(s) 180
AvaII GGWCC 2 cut(s) 694, 877
BaeGI GKGCMC 1 cut(s) 604
BanI GGYRCC 2 cut(s) 316, 722
BanII GRGCYC 1 cut(s) 604
BauI CACGAG 1 cut(s) 438
BbsI GAAGAC 3 cut(s) 150, 376, 540
BbvI GCAGC 2 cut(s) 669, 834
BccI CCATC 1 cut(s) 833
BceAI ACGGC 5 cut(s) 428, 451, 736, 815, 866
BcgI CGANNNNNNTGC 2 cut(s) 778, 812
BciT130I CCWGG 3 cut(s) 566, 582, 881
BcnI CCSGG 2 cut(s) 380, 667
BfoI RGCGCY 3 cut(s) 18, 320, 726
BfuAI ACCTGC 2 cut(s) 125, 582
BglI GCCNNNNNGGC 1 cut(s) 871
Bme1390I CCNGG 5 cut(s) 380, 566, 582, 667, 881
Bme18I GGWCC 2 cut(s) 694, 877
BmgT120I GGNCC 4 cut(s) 600, 601, 694, 877
BmiI GGNNCC 5 cut(s) 318, 602, 603, 695, 724
BmrFI CCNGG 5 cut(s) 380, 566, 582, 667, 881
BpiI GAAGAC 3 cut(s) 150, 376, 540
BpmI CTGGAG 1 cut(s) 587
BpuMI CCSGG 2 cut(s) 380, 667
BsaHI GRCGYC 3 cut(s) 317, 323, 723
BsaJI CCNNGG 6 cut(s) 194, 243, 552, 609, 726, 831
BsaWI WCCGGW 1 cut(s) 617
BsaXI ACNNNNNCTCC 6 cut(s) 53, 83, 266, 272, 296, 302
Bsc4I CCNNNNNNNGG 1 cut(s) 610
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 617
BseBI CCWGG 3 cut(s) 566, 582, 881
BseDI CCNNGG 6 cut(s) 194, 243, 552, 609, 726, 831
BseGI GGATG 2 cut(s) 253, 925
BseLI CCNNNNNNNGG 1 cut(s) 610
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 9
BseRI GAGGAG 8 cut(s) 281, 284, 287, 290, 293, 356, 533, 536
BseSI GKGCMC 1 cut(s) 604
BseXI GCAGC 2 cut(s) 669, 834
BseYI CCCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 322
Bsh1236I CGCG 6 cut(s) 99, 179, 245, 487, 528, 808
Bsh1285I CGRYCG 2 cut(s) 666, 857
BshFI GGCC 6 cut(s) 242, 370, 466, 533, 557, 602
BshNI GGYRCC 2 cut(s) 316, 722
BsiEI CGRYCG 2 cut(s) 666, 857
BsiSI CCGG 4 cut(s) 371, 380, 618, 666
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 1 cut(s) 610
BsmFI GGGAC 1 cut(s) 707
BsmI GAATGC 1 cut(s) 510
BsnI GGCC 6 cut(s) 242, 370, 466, 533, 557, 602
Bsp120I GGGCCC 1 cut(s) 600
Bsp1286I GDGCHC 1 cut(s) 604
Bsp13I TCCGGA 1 cut(s) 617
Bsp143I GATC 4 cut(s) 87, 154, 363, 513
BspANI GGCC 6 cut(s) 242, 370, 466, 533, 557, 602
BspCNI CTCAG 1 cut(s) 97
BspEI TCCGGA 1 cut(s) 617
BspFNI CGCG 6 cut(s) 99, 179, 245, 487, 528, 808
BspHI TCATGA 1 cut(s) 510
BspLI GGNNCC 5 cut(s) 318, 602, 603, 695, 724
BspMI ACCTGC 2 cut(s) 125, 582
BspQI GCTCTTC 1 cut(s) 812
BspT107I GGYRCC 2 cut(s) 316, 722
BsrFI RCCGGY 1 cut(s) 370
BsrI ACTGG 1 cut(s) 9
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 6 cut(s) 194, 243, 552, 609, 726, 831
BssMI GATC 4 cut(s) 87, 154, 363, 513
BssNAI GTATAC 1 cut(s) 376
BssNI GRCGYC 3 cut(s) 317, 323, 723
BssSI CACGAG 1 cut(s) 438
BssT1I CCWWGG 2 cut(s) 609, 726
Bst1107I GTATAC 1 cut(s) 376
Bst2BI CACGAG 1 cut(s) 438
Bst2UI CCWGG 3 cut(s) 566, 582, 881
Bst4CI ACNGT 2 cut(s) 359, 475
Bst6I CTCTTC 3 cut(s) 70, 258, 812
BstACI GRCGYC 3 cut(s) 317, 323, 723
BstAPI GCANNNNNTGC 1 cut(s) 591
BstC8I GCNNGC 2 cut(s) 97, 398
BstDEI CTNAG 3 cut(s) 84, 500, 911
BstDSI CCRYGG 2 cut(s) 243, 831
BstF5I GGATG 2 cut(s) 253, 925
BstFNI CGCG 6 cut(s) 99, 179, 245, 487, 528, 808
BstH2I RGCGCY 3 cut(s) 18, 320, 726
BstHHI GCGC 7 cut(s) 17, 181, 208, 319, 528, 725, 808
BstKTI GATC 4 cut(s) 90, 157, 366, 516
BstMBI GATC 4 cut(s) 87, 154, 363, 513
BstMCI CGRYCG 2 cut(s) 666, 857
BstNI CCWGG 3 cut(s) 566, 582, 881
BstSCI CCNGG 5 cut(s) 378, 564, 580, 665, 879
BstSLI GKGCMC 1 cut(s) 604
BstUI CGCG 6 cut(s) 99, 179, 245, 487, 528, 808
BstV1I GCAGC 2 cut(s) 669, 834
BstV2I GAAGAC 3 cut(s) 150, 376, 540
BstZ17I GTATAC 1 cut(s) 376
BsuRI GGCC 6 cut(s) 242, 370, 466, 533, 557, 602
BtgI CCRYGG 2 cut(s) 243, 831
BtsCI GGATG 2 cut(s) 253, 925
BveI ACCTGC 2 cut(s) 125, 582
Cac8I GCNNGC 2 cut(s) 97, 398
CaiI CAGNNNCTG 1 cut(s) 880
CciI TCATGA 1 cut(s) 510
CfoI GCGC 7 cut(s) 17, 181, 208, 319, 528, 725, 808
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 4 cut(s) 600, 601, 694, 877
Cfr42I CCGCGG 1 cut(s) 246
CseI GACGC 3 cut(s) 88, 185, 476
CsiI ACCWGGT 1 cut(s) 879
CviAII CATG 1 cut(s) 511
DdeI CTNAG 3 cut(s) 84, 500, 911
DinI GGCGCC 2 cut(s) 318, 724
DpnI GATC 4 cut(s) 89, 156, 365, 515
DpnII GATC 4 cut(s) 87, 154, 363, 513
DrdI GACNNNNNNGTC 2 cut(s) 670, 737
DseDI GACNNNNNNGTC 2 cut(s) 670, 737
Eam1104I CTCTTC 3 cut(s) 70, 258, 812
EarI CTCTTC 3 cut(s) 70, 258, 812
EciI GGCGGA 1 cut(s) 353
Eco130I CCWWGG 2 cut(s) 609, 726
Eco24I GRGCYC 1 cut(s) 604
Eco47I GGWCC 2 cut(s) 694, 877
EcoO109I RGGNCCY 3 cut(s) 601, 694, 877
EcoRII CCWGG 3 cut(s) 564, 580, 879
EcoT14I CCWWGG 2 cut(s) 609, 726
EcoT38I GRGCYC 1 cut(s) 604
EgeI GGCGCC 2 cut(s) 318, 724
EheI GGCGCC 2 cut(s) 318, 724
ErhI CCWWGG 2 cut(s) 609, 726
FaeI CATG 1 cut(s) 514
FaiI YATR 5 cut(s) 162, 354, 376, 512, 868
FaqI GGGAC 1 cut(s) 707
FatI CATG 1 cut(s) 510
FauI CCCGC 2 cut(s) 104, 612
FblI GTMKAC 2 cut(s) 375, 470
FokI GGATG 2 cut(s) 260, 912
FriOI GRGCYC 1 cut(s) 604
GlaI GCGC 7 cut(s) 16, 180, 207, 318, 527, 724, 807
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 587
HaeII RGCGCY 3 cut(s) 18, 320, 726
HaeIII GGCC 6 cut(s) 242, 370, 466, 533, 557, 602
HapII CCGG 4 cut(s) 371, 380, 618, 666
HgaI GACGC 3 cut(s) 88, 185, 476
HhaI GCGC 7 cut(s) 17, 181, 208, 319, 528, 725, 808
Hin1I GRCGYC 3 cut(s) 317, 323, 723
Hin1II CATG 1 cut(s) 514
Hin6I GCGC 7 cut(s) 15, 179, 206, 317, 526, 723, 806
HinP1I GCGC 7 cut(s) 15, 179, 206, 317, 526, 723, 806
HincII GTYRAC 2 cut(s) 33, 471
HindII GTYRAC 2 cut(s) 33, 471
HinfI GANTC 3 cut(s) 425, 431, 455
HpaI GTTAAC 1 cut(s) 33
HpaII CCGG 4 cut(s) 371, 380, 618, 666
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 3 cut(s) 33, 376, 471
Hpy188I TCNGA 9 cut(s) 73, 87, 363, 430, 460, 553, 708, 753, 935
Hpy188III TCNNGA 4 cut(s) 119, 511, 618, 692
Hpy8I GTNNAC 3 cut(s) 33, 376, 471
HpyAV CCTTC 2 cut(s) 707, 775
HpyCH4III ACNGT 2 cut(s) 359, 475
HpyCH4IV ACGT 3 cut(s) 231, 323, 795
HpyCH4V TGCA 3 cut(s) 4, 303, 925
HpyF3I CTNAG 3 cut(s) 84, 500, 911
HpySE526I ACGT 3 cut(s) 231, 323, 795
Hsp92I GRCGYC 3 cut(s) 317, 323, 723
Hsp92II CATG 1 cut(s) 514
HspAI GCGC 7 cut(s) 15, 179, 206, 317, 526, 723, 806
KasI GGCGCC 2 cut(s) 316, 722
Kpn2I TCCGGA 1 cut(s) 617
KspAI GTTAAC 1 cut(s) 33
KspI CCGCGG 1 cut(s) 246
Kzo9I GATC 4 cut(s) 87, 154, 363, 513
LguI GCTCTTC 1 cut(s) 812
LmnI GCTCC 3 cut(s) 523, 708, 754
Lsp1109I GCAGC 2 cut(s) 669, 834
MabI ACCWGGT 1 cut(s) 879
MaeII ACGT 3 cut(s) 231, 323, 795
MaeIII GTNAC 2 cut(s) 475, 791
MalI GATC 4 cut(s) 89, 156, 365, 515
MboI GATC 4 cut(s) 87, 154, 363, 513
MboII GAAGA 9 cut(s) 57, 155, 266, 269, 275, 376, 540, 633, 829
MhlI GDGCHC 1 cut(s) 604
MluCI AATT 2 cut(s) 182, 919
Mly113I GGCGCC 2 cut(s) 317, 723
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 4 cut(s) 96, 180, 453, 776
MroI TCCGGA 1 cut(s) 617
MseI TTAA 1 cut(s) 32
MspA1I CMGCKG 2 cut(s) 20, 245
MspI CCGG 4 cut(s) 371, 380, 618, 666
MspR9I CCNGG 5 cut(s) 380, 566, 582, 667, 881
Mva1269I GAATGC 1 cut(s) 510
MvaI CCWGG 3 cut(s) 566, 582, 881
MvnI CGCG 6 cut(s) 99, 179, 245, 487, 528, 808
NarI GGCGCC 2 cut(s) 317, 723
NciI CCSGG 2 cut(s) 380, 667
NdeII GATC 4 cut(s) 87, 154, 363, 513
NlaIII CATG 1 cut(s) 514
NlaIV GGNNCC 5 cut(s) 318, 602, 603, 695, 724
NmeAIII GCCGAG 1 cut(s) 219
PagI TCATGA 1 cut(s) 510
PciSI GCTCTTC 1 cut(s) 812
PcsI WCGNNNNNNNCGW 4 cut(s) 96, 476, 668, 761
PctI GAATGC 1 cut(s) 510
PfeI GAWTC 2 cut(s) 425, 455
PflFI GACNNNGTC 1 cut(s) 667
PleI GAGTC 1 cut(s) 425
PluTI GGCGCC 2 cut(s) 320, 726
PpsI GAGTC 1 cut(s) 425
PpuMI RGGWCCY 2 cut(s) 694, 877
PsiI TTATAA 1 cut(s) 354
Psp5II RGGWCCY 2 cut(s) 694, 877
Psp6I CCWGG 3 cut(s) 564, 580, 879
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 3 cut(s) 564, 580, 879
PspN4I GGNNCC 5 cut(s) 318, 602, 603, 695, 724
PspOMI GGGCCC 1 cut(s) 600
PspPI GGNCC 4 cut(s) 600, 601, 694, 877
PspPPI RGGWCCY 2 cut(s) 694, 877
PstNI CAGNNNCTG 1 cut(s) 880
PsyI GACNNNGTC 1 cut(s) 667
SacII CCGCGG 1 cut(s) 246
SalI GTCGAC 1 cut(s) 469
SapI GCTCTTC 1 cut(s) 812
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 4 cut(s) 87, 154, 363, 513
Sau96I GGNCC 4 cut(s) 600, 601, 694, 877
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 5 cut(s) 380, 566, 582, 667, 881
SduI GDGCHC 1 cut(s) 604
SexAI ACCWGGT 1 cut(s) 879
SfoI GGCGCC 2 cut(s) 318, 724
Sfr303I CCGCGG 1 cut(s) 246
SgrBI CCGCGG 1 cut(s) 246
SgrDI CGTCGACG 1 cut(s) 469
SinI GGWCC 2 cut(s) 694, 877
Sse9I AATT 2 cut(s) 182, 919
SspDI GGCGCC 2 cut(s) 316, 722
StyD4I CCNGG 5 cut(s) 378, 564, 580, 665, 879
StyI CCWWGG 2 cut(s) 609, 726
TaaI ACNGT 2 cut(s) 359, 475
TaiI ACGT 3 cut(s) 234, 326, 798
TaqI TCGA 6 cut(s) 126, 387, 470, 516, 662, 674
TasI AATT 2 cut(s) 182, 919
TfiI GAWTC 2 cut(s) 425, 455
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseI GCWGC 2 cut(s) 657, 822
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 918
Tth111I GACNNNGTC 1 cut(s) 667
VpaK11BI GGWCC 2 cut(s) 694, 877
XapI RAATTY 1 cut(s) 919
XmiI GTMKAC 2 cut(s) 375, 470
ZraI GACGTC 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.