Rw7G011670

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0011713
Physical Location & Seq
Forward (+)
10970453 .. 10971382
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G011670.1

Sequence Viewer

Length: 930 bp
ATGCAGACCAGTAGCGCCGCTGCGAGTTCGTTAACCTCGCTCTCTCCCAGCTTCAACGCCTACTCTTCCTCCGACAGCCTCGCTCAGATCGCCGCCCGCGTCGTCAGCGAGTTTCGTCAAGAACTCGATGAGGCAGGTTTGGAAGACATTGATGATCTGTATGATAACAACAACGACGCGCAATTCTCACCGCCGCGGTTGGAAGCGCAACAAGAGGCTGAAAACTACGACGTAAAGGAGGCGGCGGATGAGGAAGAAGATGAAGAGGAGGAGGAGGAGTTTGAGTTCGCTTTTGTGTGCAGAGAGGGAGAGGCGCCGACGTCGCCGATTGCGGCCGAGGAGGTTTTTTATAACGGTCAGATCAGGCCGGTATACCCGGTCTTCGACCAGAGCTTGCTTCTCCAAAAAGACGACGACCTTGAATCCGACTCTACTCATGCCGTGAATAAAGATTCCGAGATGTTAGCCTCGACGGTTACGAAGCCGCGTCGTCAGCCGCTAAGAATGCTCATGATCGAGGAGGAGCGCGAGGCCGCGTCCTGCTCGTCTTCCGAGGCCGACGACCTGGAGAACCTGCCACCTGGCACTTACTGCGTGTGGGCCCCGCCCAAGGCTTCCAGAAGAAGCGGCGGCGGCGGTTGCGATAAGAGCAGCTCGACCGGGTCGTCGAAGCGGTGGAAGTTTCGGGACCTTCTTTCTCGGAGCAGTAGCGACGGCGCCAAGGACACTCTAGTCTTTTTTGCTCCGACGACGACGACGACCAAGACCGCAGAGAAGGAGGGCAGTAACGTCGTAGTCGCGCGGAAAGGGAAGAGCAGCAAAGCCGTGGCTGATGGGGATAAACGGCGGTCGTTTCTGCCATACAGGCAGGACCTGGTGGGGTTTTTCTCTAATGTGAATGGGCTTAGTAGGAATTTGCATCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

309

Amino Acids

34.02

Weight (kDa)

4.52

Isoelectric Point (pI)

70.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 112 - 278 3e-24 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011713)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62770
fragaria_vesca FvH4_5g05310
malus_domestica MD14G1180400.v1.1
prunus_persica Prupe.5G173800_v2.0.a1 Prupe.5G173800_v2.0.a1
pyrus_communis pycom06g15510 pycom14g15040
rosa_chinensis RchiOBHm_Chr7g0193551
rosa_laevigata RLG00000004263
rosa_multiflora Rmu_sc0000282.1_g000001 Rmu_sc0041282.1_g000001 Rmu_ssc0000035.1_g000002
rosa_roxburghii Rroxscaffold_3G00262010
rosa_rugosa Rorug07G0010200
rosa_samantha Rh7AG137000 Rh7BG137300 Rh7CG140600 Rh7DG138400
rosa_wichuraiana Rw7G011670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
AasI GACNNNNNNGTC 2 cut(s) 664, 731
AatII GACGTC 1 cut(s) 323
Acc36I ACCTGC 2 cut(s) 125, 582
AccB1I GGYRCC 2 cut(s) 313, 716
AccI GTMKAC 1 cut(s) 372
AccII CGCG 8 cut(s) 99, 179, 196, 487, 528, 536, 800, 802
AcoI YGGCCR 1 cut(s) 333
AcsI RAATTY 1 cut(s) 913
AcyI GRCGYC 3 cut(s) 314, 320, 717
AfiI CCNNNNNNNGG 1 cut(s) 610
AgsI TTSAA 2 cut(s) 55, 422
AjnI CCWGG 3 cut(s) 564, 580, 873
AloI GAACNNNNNNTCC 2 cut(s) 269, 301
AluBI AGCT 3 cut(s) 51, 393, 654
AluI AGCT 3 cut(s) 51, 393, 654
AlwNI CAGNNNCTG 1 cut(s) 874
AoxI GGCC 5 cut(s) 333, 365, 531, 555, 600
ApaI GGGCCC 1 cut(s) 604
ApeKI GCWGC 3 cut(s) 20, 651, 816
ApoI RAATTY 1 cut(s) 913
AspLEI GCGC 7 cut(s) 17, 181, 208, 316, 528, 719, 802
AspS9I GGNCC 4 cut(s) 600, 601, 688, 871
AsuC2I CCSGG 2 cut(s) 377, 661
AsuHPI GGTGA 1 cut(s) 180
AvaII GGWCC 2 cut(s) 688, 871
BaeGI GKGCMC 1 cut(s) 604
BanI GGYRCC 2 cut(s) 313, 716
BanII GRGCYC 1 cut(s) 604
BbsI GAAGAC 3 cut(s) 150, 373, 540
BbvI GCAGC 3 cut(s) 7, 663, 828
BccI CCATC 1 cut(s) 827
BceAI ACGGC 4 cut(s) 425, 730, 809, 860
BcgI CGANNNNNNTGC 2 cut(s) 772, 806
BciT130I CCWGG 3 cut(s) 566, 582, 875
BcnI CCSGG 2 cut(s) 377, 661
BfaI CTAG 1 cut(s) 731
BfoI RGCGCY 3 cut(s) 18, 317, 720
BfuAI ACCTGC 2 cut(s) 125, 582
BglI GCCNNNNNGGC 1 cut(s) 865
Bme1390I CCNGG 5 cut(s) 377, 566, 582, 661, 875
Bme18I GGWCC 2 cut(s) 688, 871
BmgT120I GGNCC 4 cut(s) 600, 601, 688, 871
BmiI GGNNCC 5 cut(s) 315, 602, 603, 689, 718
BmrFI CCNGG 5 cut(s) 377, 566, 582, 661, 875
BpiI GAAGAC 3 cut(s) 150, 373, 540
BpmI CTGGAG 1 cut(s) 587
BpuMI CCSGG 2 cut(s) 377, 661
BsaHI GRCGYC 3 cut(s) 314, 320, 717
BsaJI CCNNGG 6 cut(s) 194, 336, 552, 609, 720, 825
BsaXI ACNNNNNCTCC 6 cut(s) 53, 83, 263, 269, 293, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 610
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 9
BseBI CCWGG 3 cut(s) 566, 582, 875
BseDI CCNNGG 6 cut(s) 194, 336, 552, 609, 720, 825
BseGI GGATG 2 cut(s) 253, 919
BseLI CCNNNNNNNGG 1 cut(s) 610
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 9
BseRI GAGGAG 7 cut(s) 281, 284, 287, 290, 353, 533, 536
BseSI GKGCMC 1 cut(s) 604
BseX3I CGGCCG 1 cut(s) 333
BseXI GCAGC 3 cut(s) 7, 663, 828
BseYI CCCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 319
Bsh1236I CGCG 8 cut(s) 99, 179, 196, 487, 528, 536, 800, 802
Bsh1285I CGRYCG 3 cut(s) 336, 660, 851
BshFI GGCC 5 cut(s) 335, 367, 533, 557, 602
BshNI GGYRCC 2 cut(s) 313, 716
BsiEI CGRYCG 3 cut(s) 336, 660, 851
BsiSI CCGG 3 cut(s) 368, 377, 660
BslFI GGGAC 1 cut(s) 701
BslI CCNNNNNNNGG 1 cut(s) 610
BsmFI GGGAC 1 cut(s) 701
BsmI GAATGC 1 cut(s) 510
BsnI GGCC 5 cut(s) 335, 367, 533, 557, 602
Bsp120I GGGCCC 1 cut(s) 600
Bsp1286I GDGCHC 1 cut(s) 604
Bsp143I GATC 4 cut(s) 87, 154, 360, 513
BspANI GGCC 5 cut(s) 335, 367, 533, 557, 602
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 8 cut(s) 99, 179, 196, 487, 528, 536, 800, 802
BspHI TCATGA 1 cut(s) 510
BspLI GGNNCC 5 cut(s) 315, 602, 603, 689, 718
BspMI ACCTGC 2 cut(s) 125, 582
BspQI GCTCTTC 1 cut(s) 806
BspT107I GGYRCC 2 cut(s) 313, 716
BsrFI RCCGGY 1 cut(s) 367
BsrI ACTGG 1 cut(s) 9
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 6 cut(s) 194, 336, 552, 609, 720, 825
BssMI GATC 4 cut(s) 87, 154, 360, 513
BssNAI GTATAC 1 cut(s) 373
BssNI GRCGYC 3 cut(s) 314, 320, 717
BssT1I CCWWGG 2 cut(s) 609, 720
Bst1107I GTATAC 1 cut(s) 373
Bst2UI CCWGG 3 cut(s) 566, 582, 875
Bst4CI ACNGT 2 cut(s) 356, 475
Bst6I CTCTTC 3 cut(s) 70, 258, 806
BstACI GRCGYC 3 cut(s) 314, 320, 717
BstAPI GCANNNNNTGC 1 cut(s) 591
BstC8I GCNNGC 2 cut(s) 97, 395
BstDEI CTNAG 3 cut(s) 84, 500, 905
BstDSI CCRYGG 2 cut(s) 194, 825
BstF5I GGATG 2 cut(s) 253, 919
BstFNI CGCG 8 cut(s) 99, 179, 196, 487, 528, 536, 800, 802
BstH2I RGCGCY 3 cut(s) 18, 317, 720
BstHHI GCGC 7 cut(s) 17, 181, 208, 316, 528, 719, 802
BstKTI GATC 4 cut(s) 90, 157, 363, 516
BstMBI GATC 4 cut(s) 87, 154, 360, 513
BstMCI CGRYCG 3 cut(s) 336, 660, 851
BstNI CCWGG 3 cut(s) 566, 582, 875
BstSCI CCNGG 5 cut(s) 375, 564, 580, 659, 873
BstSLI GKGCMC 1 cut(s) 604
BstUI CGCG 8 cut(s) 99, 179, 196, 487, 528, 536, 800, 802
BstV1I GCAGC 3 cut(s) 7, 663, 828
BstV2I GAAGAC 3 cut(s) 150, 373, 540
BstZ17I GTATAC 1 cut(s) 373
BstZI CGGCCG 1 cut(s) 333
BsuRI GGCC 5 cut(s) 335, 367, 533, 557, 602
BtgI CCRYGG 2 cut(s) 194, 825
BtsCI GGATG 2 cut(s) 253, 919
BveI ACCTGC 2 cut(s) 125, 582
Cac8I GCNNGC 2 cut(s) 97, 395
CaiI CAGNNNCTG 1 cut(s) 874
CciI TCATGA 1 cut(s) 510
CfoI GCGC 7 cut(s) 17, 181, 208, 316, 528, 719, 802
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 4 cut(s) 600, 601, 688, 871
Cfr42I CCGCGG 1 cut(s) 197
CseI GACGC 4 cut(s) 88, 185, 476, 525
CsiI ACCWGGT 1 cut(s) 873
CviAII CATG 2 cut(s) 437, 511
DdeI CTNAG 3 cut(s) 84, 500, 905
DinI GGCGCC 2 cut(s) 315, 718
DpnI GATC 4 cut(s) 89, 156, 362, 515
DpnII GATC 4 cut(s) 87, 154, 360, 513
DrdI GACNNNNNNGTC 2 cut(s) 664, 731
DseDI GACNNNNNNGTC 2 cut(s) 664, 731
EaeI YGGCCR 1 cut(s) 333
EagI CGGCCG 1 cut(s) 333
Eam1104I CTCTTC 3 cut(s) 70, 258, 806
EarI CTCTTC 3 cut(s) 70, 258, 806
EciI GGCGGA 1 cut(s) 260
EclXI CGGCCG 1 cut(s) 333
Eco130I CCWWGG 2 cut(s) 609, 720
Eco24I GRGCYC 1 cut(s) 604
Eco47I GGWCC 2 cut(s) 688, 871
Eco52I CGGCCG 1 cut(s) 333
EcoO109I RGGNCCY 3 cut(s) 601, 688, 871
EcoRII CCWGG 3 cut(s) 564, 580, 873
EcoT14I CCWWGG 2 cut(s) 609, 720
EcoT38I GRGCYC 1 cut(s) 604
EgeI GGCGCC 2 cut(s) 315, 718
EheI GGCGCC 2 cut(s) 315, 718
ErhI CCWWGG 2 cut(s) 609, 720
FaeI CATG 2 cut(s) 440, 514
FaiI YATR 6 cut(s) 162, 351, 373, 438, 512, 862
FaqI GGGAC 1 cut(s) 701
FatI CATG 2 cut(s) 436, 510
FauI CCCGC 2 cut(s) 104, 612
FblI GTMKAC 1 cut(s) 372
FokI GGATG 2 cut(s) 260, 906
FriOI GRGCYC 1 cut(s) 604
FspBI CTAG 1 cut(s) 731
GlaI GCGC 7 cut(s) 16, 180, 207, 315, 527, 718, 801
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 587
HaeII RGCGCY 3 cut(s) 18, 317, 720
HaeIII GGCC 5 cut(s) 335, 367, 533, 557, 602
HapII CCGG 3 cut(s) 368, 377, 660
HgaI GACGC 4 cut(s) 88, 185, 476, 525
HhaI GCGC 7 cut(s) 17, 181, 208, 316, 528, 719, 802
Hin1I GRCGYC 3 cut(s) 314, 320, 717
Hin1II CATG 2 cut(s) 440, 514
Hin6I GCGC 7 cut(s) 15, 179, 206, 314, 526, 717, 800
HinP1I GCGC 7 cut(s) 15, 179, 206, 314, 526, 717, 800
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 3 cut(s) 422, 428, 452
HpaI GTTAAC 1 cut(s) 33
HpaII CCGG 3 cut(s) 368, 377, 660
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 2 cut(s) 33, 373
Hpy188I TCNGA 8 cut(s) 73, 87, 360, 427, 457, 553, 702, 747
Hpy188III TCNNGA 4 cut(s) 119, 511, 618, 686
Hpy8I GTNNAC 2 cut(s) 33, 373
HpyAV CCTTC 2 cut(s) 701, 769
HpyCH4III ACNGT 2 cut(s) 356, 475
HpyCH4IV ACGT 3 cut(s) 231, 320, 789
HpyCH4V TGCA 3 cut(s) 4, 300, 919
HpyF3I CTNAG 3 cut(s) 84, 500, 905
HpySE526I ACGT 3 cut(s) 231, 320, 789
Hsp92I GRCGYC 3 cut(s) 314, 320, 717
Hsp92II CATG 2 cut(s) 440, 514
HspAI GCGC 7 cut(s) 15, 179, 206, 314, 526, 717, 800
KasI GGCGCC 2 cut(s) 313, 716
KspAI GTTAAC 1 cut(s) 33
KspI CCGCGG 1 cut(s) 197
Kzo9I GATC 4 cut(s) 87, 154, 360, 513
LguI GCTCTTC 1 cut(s) 806
LmnI GCTCC 3 cut(s) 523, 702, 748
Lsp1109I GCAGC 3 cut(s) 7, 663, 828
MabI ACCWGGT 1 cut(s) 873
MaeI CTAG 1 cut(s) 731
MaeII ACGT 3 cut(s) 231, 320, 789
MaeIII GTNAC 2 cut(s) 475, 785
MalI GATC 4 cut(s) 89, 156, 362, 515
MboI GATC 4 cut(s) 87, 154, 360, 513
MboII GAAGA 9 cut(s) 57, 155, 266, 269, 275, 373, 540, 633, 823
MhlI GDGCHC 1 cut(s) 604
MluCI AATT 2 cut(s) 182, 913
Mly113I GGCGCC 2 cut(s) 314, 717
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 4 cut(s) 96, 180, 450, 770
MseI TTAA 1 cut(s) 32
MspA1I CMGCKG 2 cut(s) 20, 196
MspI CCGG 3 cut(s) 368, 377, 660
MspR9I CCNGG 5 cut(s) 377, 566, 582, 661, 875
Mva1269I GAATGC 1 cut(s) 510
MvaI CCWGG 3 cut(s) 566, 582, 875
MvnI CGCG 8 cut(s) 99, 179, 196, 487, 528, 536, 800, 802
NarI GGCGCC 2 cut(s) 314, 717
NciI CCSGG 2 cut(s) 377, 661
NdeII GATC 4 cut(s) 87, 154, 360, 513
NlaIII CATG 2 cut(s) 440, 514
NlaIV GGNNCC 5 cut(s) 315, 602, 603, 689, 718
NmeAIII GCCGAG 1 cut(s) 361
PagI TCATGA 1 cut(s) 510
PciSI GCTCTTC 1 cut(s) 806
PcsI WCGNNNNNNNCGW 4 cut(s) 96, 476, 662, 755
PctI GAATGC 1 cut(s) 510
PfeI GAWTC 2 cut(s) 422, 452
PflFI GACNNNGTC 1 cut(s) 661
PleI GAGTC 1 cut(s) 422
PluTI GGCGCC 2 cut(s) 317, 720
PpsI GAGTC 1 cut(s) 422
PpuMI RGGWCCY 2 cut(s) 688, 871
PsiI TTATAA 1 cut(s) 351
Psp5II RGGWCCY 2 cut(s) 688, 871
Psp6I CCWGG 3 cut(s) 564, 580, 873
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 3 cut(s) 564, 580, 873
PspN4I GGNNCC 5 cut(s) 315, 602, 603, 689, 718
PspOMI GGGCCC 1 cut(s) 600
PspPI GGNCC 4 cut(s) 600, 601, 688, 871
PspPPI RGGWCCY 2 cut(s) 688, 871
PstNI CAGNNNCTG 1 cut(s) 874
PsyI GACNNNGTC 1 cut(s) 661
SacII CCGCGG 1 cut(s) 197
SapI GCTCTTC 1 cut(s) 806
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 4 cut(s) 87, 154, 360, 513
Sau96I GGNCC 4 cut(s) 600, 601, 688, 871
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 5 cut(s) 377, 566, 582, 661, 875
SduI GDGCHC 1 cut(s) 604
SexAI ACCWGGT 1 cut(s) 873
SfoI GGCGCC 2 cut(s) 315, 718
Sfr303I CCGCGG 1 cut(s) 197
SgrBI CCGCGG 1 cut(s) 197
SinI GGWCC 2 cut(s) 688, 871
Sse9I AATT 2 cut(s) 182, 913
SspDI GGCGCC 2 cut(s) 313, 716
SspMI CTAG 1 cut(s) 731
StyD4I CCNGG 5 cut(s) 375, 564, 580, 659, 873
StyI CCWWGG 2 cut(s) 609, 720
TaaI ACNGT 2 cut(s) 356, 475
TaiI ACGT 3 cut(s) 234, 323, 792
TaqI TCGA 6 cut(s) 126, 384, 470, 516, 656, 668
TasI AATT 2 cut(s) 182, 913
TfiI GAWTC 2 cut(s) 422, 452
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseI GCWGC 3 cut(s) 20, 651, 816
TspDTI ATGAA 1 cut(s) 276
Tth111I GACNNNGTC 1 cut(s) 661
VpaK11BI GGWCC 2 cut(s) 688, 871
XapI RAATTY 1 cut(s) 913
XmiI GTMKAC 1 cut(s) 372
XspI CTAG 1 cut(s) 731
ZraI GACGTC 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.