Rmu_ssc0000035.1_g000002

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000035.1
OG0011713
Physical Location & Seq
Forward (+)
2391 .. 3302
912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000035.1_g000002.1.cds

Sequence Viewer

Length: 912 bp
atgcagaccagtagcgccgctgcgagttcgttaacctcgctctctcccagcttcaacgcctactcttcctccgacagcctcgctcagatcgccgcccgcgtcgtcagcgagtttcgtcaagaactcgatgaggcaggtttggaagacattgatgatctgtatgataacaacaacgacgcgcaattctcaccgccgcggttggaagcgcaacaagaggctgaaaacgacgacgtaaaggaggcggcggatgaggaagaagaggaggaggagtttgagttcgcttttgtgtgcagagagggagaggcgccgacgtcgccgattgcggccgaggaggttttttataacggtcagatcaggccggtatacccggtcttcgaccagagcttgcttctccaaaacgacgacgaccttgaatccgactctactcatgccgtgaatacagattccgagatgttagcctcgacggttacgaagccgcgtcggcagccgctacgaatgctcatgatcgaggaggagcgcgaggccgcgtcctgctcgtcttccgaggccgacgacctggagaacctgccacctggcacttactgcgtgtgggccccgcccaaggcttccagaagaagcggcggttgcgataagagcagctcgaccgggtcgtcgaagcggtggaagtttcgggaccttctttctcggagcagtagcgacggcggcaaggacactctcgtcttttttgctccgacgacgacgaccaagaccgcagagaaggagggcagtaacgtcgtagtcgcgcggaaagggaagagcagcaaagccgtggctgatggggataaacggcggtcgtttctgccatacaggcaggacctggtggggtttttctctaatgtgaatgggcttagtaggaatttgcatccgttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

303

Amino Acids

33.33

Weight (kDa)

4.49

Isoelectric Point (pI)

67.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011713)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62770
fragaria_vesca FvH4_5g05310
malus_domestica MD14G1180400.v1.1
prunus_persica Prupe.5G173800_v2.0.a1 Prupe.5G173800_v2.0.a1
pyrus_communis pycom06g15510 pycom14g15040
rosa_chinensis RchiOBHm_Chr7g0193551
rosa_laevigata RLG00000004263
rosa_multiflora Rmu_sc0000282.1_g000001 Rmu_sc0041282.1_g000001 Rmu_ssc0000035.1_g000002
rosa_roxburghii Rroxscaffold_3G00262010
rosa_rugosa Rorug07G0010200
rosa_samantha Rh7AG137000 Rh7BG137300 Rh7CG140600 Rh7DG138400
rosa_wichuraiana Rw7G011670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
AasI GACNNNNNNGTC 2 cut(s) 649, 716
AatII GACGTC 1 cut(s) 314
Acc36I ACCTGC 2 cut(s) 125, 573
AccB1I GGYRCC 1 cut(s) 304
AccI GTMKAC 1 cut(s) 363
AccII CGCG 8 cut(s) 99, 179, 196, 478, 519, 527, 782, 784
AcoI YGGCCR 1 cut(s) 324
AcsI RAATTY 1 cut(s) 895
AcyI GRCGYC 2 cut(s) 305, 311
AfiI CCNNNNNNNGG 1 cut(s) 601
AgsI TTSAA 2 cut(s) 55, 413
AjnI CCWGG 3 cut(s) 555, 571, 855
AloI GAACNNNNNNTCC 2 cut(s) 260, 292
AluBI AGCT 3 cut(s) 51, 384, 639
AluI AGCT 3 cut(s) 51, 384, 639
AlwNI CAGNNNCTG 1 cut(s) 856
AoxI GGCC 5 cut(s) 324, 356, 522, 546, 591
ApaI GGGCCC 1 cut(s) 595
ApeKI GCWGC 4 cut(s) 20, 484, 636, 798
ApoI RAATTY 1 cut(s) 895
AspLEI GCGC 6 cut(s) 17, 181, 208, 307, 519, 784
AspS9I GGNCC 4 cut(s) 591, 592, 673, 853
AsuC2I CCSGG 2 cut(s) 368, 646
AsuHPI GGTGA 1 cut(s) 180
AvaII GGWCC 2 cut(s) 673, 853
BaeGI GKGCMC 1 cut(s) 595
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 595
BbsI GAAGAC 3 cut(s) 150, 364, 531
BbvI GCAGC 4 cut(s) 7, 496, 648, 810
BccI CCATC 1 cut(s) 809
BceAI ACGGC 4 cut(s) 416, 715, 791, 842
BcgI CGANNNNNNTGC 2 cut(s) 754, 788
BciT130I CCWGG 3 cut(s) 557, 573, 857
BcnI CCSGG 2 cut(s) 368, 646
BfoI RGCGCY 2 cut(s) 18, 308
BfuAI ACCTGC 2 cut(s) 125, 573
BglI GCCNNNNNGGC 2 cut(s) 481, 847
Bme1390I CCNGG 5 cut(s) 368, 557, 573, 646, 857
Bme18I GGWCC 2 cut(s) 673, 853
BmgT120I GGNCC 4 cut(s) 591, 592, 673, 853
BmiI GGNNCC 4 cut(s) 306, 593, 594, 674
BmrFI CCNGG 5 cut(s) 368, 557, 573, 646, 857
BpiI GAAGAC 3 cut(s) 150, 364, 531
BpmI CTGGAG 1 cut(s) 578
BpuMI CCSGG 2 cut(s) 368, 646
BsaHI GRCGYC 2 cut(s) 305, 311
BsaJI CCNNGG 5 cut(s) 194, 327, 543, 600, 807
BsaXI ACNNNNNCTCC 6 cut(s) 53, 83, 254, 260, 284, 290
Bsc4I CCNNNNNNNGG 1 cut(s) 601
Bse118I RCCGGY 1 cut(s) 358
Bse1I ACTGG 1 cut(s) 9
BseBI CCWGG 3 cut(s) 557, 573, 857
BseDI CCNNGG 5 cut(s) 194, 327, 543, 600, 807
BseGI GGATG 2 cut(s) 253, 901
BseLI CCNNNNNNNGG 1 cut(s) 601
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 9
BseRI GAGGAG 6 cut(s) 275, 278, 281, 344, 524, 527
BseSI GKGCMC 1 cut(s) 595
BseX3I CGGCCG 1 cut(s) 324
BseXI GCAGC 4 cut(s) 7, 496, 648, 810
BseYI CCCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 310
Bsh1236I CGCG 8 cut(s) 99, 179, 196, 478, 519, 527, 782, 784
Bsh1285I CGRYCG 3 cut(s) 327, 645, 833
BshFI GGCC 5 cut(s) 326, 358, 524, 548, 593
BshNI GGYRCC 1 cut(s) 304
BsiEI CGRYCG 3 cut(s) 327, 645, 833
BsiSI CCGG 3 cut(s) 359, 368, 645
BslFI GGGAC 1 cut(s) 686
BslI CCNNNNNNNGG 1 cut(s) 601
BsmFI GGGAC 1 cut(s) 686
BsmI GAATGC 1 cut(s) 501
BsnI GGCC 5 cut(s) 326, 358, 524, 548, 593
Bsp120I GGGCCC 1 cut(s) 591
Bsp1286I GDGCHC 1 cut(s) 595
Bsp143I GATC 4 cut(s) 87, 154, 351, 504
BspANI GGCC 5 cut(s) 326, 358, 524, 548, 593
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 8 cut(s) 99, 179, 196, 478, 519, 527, 782, 784
BspHI TCATGA 1 cut(s) 501
BspLI GGNNCC 4 cut(s) 306, 593, 594, 674
BspMI ACCTGC 2 cut(s) 125, 573
BspQI GCTCTTC 1 cut(s) 788
BspT107I GGYRCC 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 358
BsrI ACTGG 1 cut(s) 9
BssAI RCCGGY 1 cut(s) 358
BssECI CCNNGG 5 cut(s) 194, 327, 543, 600, 807
BssMI GATC 4 cut(s) 87, 154, 351, 504
BssNAI GTATAC 1 cut(s) 364
BssNI GRCGYC 2 cut(s) 305, 311
BssT1I CCWWGG 1 cut(s) 600
Bst1107I GTATAC 1 cut(s) 364
Bst2UI CCWGG 3 cut(s) 557, 573, 857
Bst4CI ACNGT 2 cut(s) 347, 466
Bst6I CTCTTC 3 cut(s) 70, 252, 788
BstACI GRCGYC 2 cut(s) 305, 311
BstAPI GCANNNNNTGC 1 cut(s) 582
BstC8I GCNNGC 2 cut(s) 97, 386
BstDEI CTNAG 2 cut(s) 84, 887
BstDSI CCRYGG 2 cut(s) 194, 807
BstF5I GGATG 2 cut(s) 253, 901
BstFNI CGCG 8 cut(s) 99, 179, 196, 478, 519, 527, 782, 784
BstH2I RGCGCY 2 cut(s) 18, 308
BstHHI GCGC 6 cut(s) 17, 181, 208, 307, 519, 784
BstKTI GATC 4 cut(s) 90, 157, 354, 507
BstMBI GATC 4 cut(s) 87, 154, 351, 504
BstMCI CGRYCG 3 cut(s) 327, 645, 833
BstNI CCWGG 3 cut(s) 557, 573, 857
BstSCI CCNGG 5 cut(s) 366, 555, 571, 644, 855
BstSLI GKGCMC 1 cut(s) 595
BstUI CGCG 8 cut(s) 99, 179, 196, 478, 519, 527, 782, 784
BstV1I GCAGC 4 cut(s) 7, 496, 648, 810
BstV2I GAAGAC 3 cut(s) 150, 364, 531
BstZ17I GTATAC 1 cut(s) 364
BstZI CGGCCG 1 cut(s) 324
BsuRI GGCC 5 cut(s) 326, 358, 524, 548, 593
BtgI CCRYGG 2 cut(s) 194, 807
BtsCI GGATG 2 cut(s) 253, 901
BveI ACCTGC 2 cut(s) 125, 573
Cac8I GCNNGC 2 cut(s) 97, 386
CaiI CAGNNNCTG 1 cut(s) 856
CciI TCATGA 1 cut(s) 501
CfoI GCGC 6 cut(s) 17, 181, 208, 307, 519, 784
Cfr10I RCCGGY 1 cut(s) 358
Cfr13I GGNCC 4 cut(s) 591, 592, 673, 853
Cfr42I CCGCGG 1 cut(s) 197
CseI GACGC 4 cut(s) 88, 185, 467, 516
CsiI ACCWGGT 1 cut(s) 855
CviAII CATG 2 cut(s) 428, 502
DdeI CTNAG 2 cut(s) 84, 887
DinI GGCGCC 1 cut(s) 306
DpnI GATC 4 cut(s) 89, 156, 353, 506
DpnII GATC 4 cut(s) 87, 154, 351, 504
DrdI GACNNNNNNGTC 2 cut(s) 649, 716
DseDI GACNNNNNNGTC 2 cut(s) 649, 716
EaeI YGGCCR 1 cut(s) 324
EagI CGGCCG 1 cut(s) 324
Eam1104I CTCTTC 3 cut(s) 70, 252, 788
EarI CTCTTC 3 cut(s) 70, 252, 788
EciI GGCGGA 1 cut(s) 260
EclXI CGGCCG 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 600
Eco24I GRGCYC 1 cut(s) 595
Eco47I GGWCC 2 cut(s) 673, 853
Eco52I CGGCCG 1 cut(s) 324
EcoO109I RGGNCCY 3 cut(s) 592, 673, 853
EcoRII CCWGG 3 cut(s) 555, 571, 855
EcoT14I CCWWGG 1 cut(s) 600
EcoT38I GRGCYC 1 cut(s) 595
EgeI GGCGCC 1 cut(s) 306
EheI GGCGCC 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 600
FaeI CATG 2 cut(s) 431, 505
FaiI YATR 6 cut(s) 162, 342, 364, 429, 503, 844
FaqI GGGAC 1 cut(s) 686
FatI CATG 2 cut(s) 427, 501
FauI CCCGC 2 cut(s) 104, 603
FblI GTMKAC 1 cut(s) 363
FokI GGATG 2 cut(s) 260, 888
FriOI GRGCYC 1 cut(s) 595
GlaI GCGC 6 cut(s) 16, 180, 207, 306, 518, 783
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 578
HaeII RGCGCY 2 cut(s) 18, 308
HaeIII GGCC 5 cut(s) 326, 358, 524, 548, 593
HapII CCGG 3 cut(s) 359, 368, 645
HgaI GACGC 4 cut(s) 88, 185, 467, 516
HhaI GCGC 6 cut(s) 17, 181, 208, 307, 519, 784
Hin1I GRCGYC 2 cut(s) 305, 311
Hin1II CATG 2 cut(s) 431, 505
Hin6I GCGC 6 cut(s) 15, 179, 206, 305, 517, 782
HinP1I GCGC 6 cut(s) 15, 179, 206, 305, 517, 782
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 3 cut(s) 413, 419, 443
HpaI GTTAAC 1 cut(s) 33
HpaII CCGG 3 cut(s) 359, 368, 645
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 2 cut(s) 33, 364
Hpy188I TCNGA 9 cut(s) 73, 87, 351, 418, 448, 544, 687, 732, 911
Hpy188III TCNNGA 4 cut(s) 119, 502, 609, 671
Hpy8I GTNNAC 2 cut(s) 33, 364
HpyAV CCTTC 2 cut(s) 686, 751
HpyCH4III ACNGT 2 cut(s) 347, 466
HpyCH4IV ACGT 3 cut(s) 231, 311, 771
HpyCH4V TGCA 3 cut(s) 4, 291, 901
HpyF3I CTNAG 2 cut(s) 84, 887
HpySE526I ACGT 3 cut(s) 231, 311, 771
Hsp92I GRCGYC 2 cut(s) 305, 311
Hsp92II CATG 2 cut(s) 431, 505
HspAI GCGC 6 cut(s) 15, 179, 206, 305, 517, 782
KasI GGCGCC 1 cut(s) 304
KspAI GTTAAC 1 cut(s) 33
KspI CCGCGG 1 cut(s) 197
Kzo9I GATC 4 cut(s) 87, 154, 351, 504
LguI GCTCTTC 1 cut(s) 788
LmnI GCTCC 3 cut(s) 514, 687, 733
Lsp1109I GCAGC 4 cut(s) 7, 496, 648, 810
MabI ACCWGGT 1 cut(s) 855
MaeII ACGT 3 cut(s) 231, 311, 771
MaeIII GTNAC 2 cut(s) 466, 767
MalI GATC 4 cut(s) 89, 156, 353, 506
MboI GATC 4 cut(s) 87, 154, 351, 504
MboII GAAGA 8 cut(s) 57, 155, 266, 269, 364, 531, 624, 805
MhlI GDGCHC 1 cut(s) 595
MluCI AATT 2 cut(s) 182, 895
Mly113I GGCGCC 1 cut(s) 305
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 4 cut(s) 96, 180, 441, 755
MseI TTAA 1 cut(s) 32
MspA1I CMGCKG 2 cut(s) 20, 196
MspI CCGG 3 cut(s) 359, 368, 645
MspR9I CCNGG 5 cut(s) 368, 557, 573, 646, 857
Mva1269I GAATGC 1 cut(s) 501
MvaI CCWGG 3 cut(s) 557, 573, 857
MvnI CGCG 8 cut(s) 99, 179, 196, 478, 519, 527, 782, 784
NarI GGCGCC 1 cut(s) 305
NciI CCSGG 2 cut(s) 368, 646
NdeII GATC 4 cut(s) 87, 154, 351, 504
NlaIII CATG 2 cut(s) 431, 505
NlaIV GGNNCC 4 cut(s) 306, 593, 594, 674
NmeAIII GCCGAG 1 cut(s) 352
PagI TCATGA 1 cut(s) 501
PciSI GCTCTTC 1 cut(s) 788
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 467, 647
PctI GAATGC 1 cut(s) 501
PfeI GAWTC 2 cut(s) 413, 443
PflFI GACNNNGTC 1 cut(s) 646
PleI GAGTC 1 cut(s) 413
PluTI GGCGCC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 413
PpuMI RGGWCCY 2 cut(s) 673, 853
PsiI TTATAA 1 cut(s) 342
Psp5II RGGWCCY 2 cut(s) 673, 853
Psp6I CCWGG 3 cut(s) 555, 571, 855
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 3 cut(s) 555, 571, 855
PspN4I GGNNCC 4 cut(s) 306, 593, 594, 674
PspOMI GGGCCC 1 cut(s) 591
PspPI GGNCC 4 cut(s) 591, 592, 673, 853
PspPPI RGGWCCY 2 cut(s) 673, 853
PstNI CAGNNNCTG 1 cut(s) 856
PsyI GACNNNGTC 1 cut(s) 646
SacII CCGCGG 1 cut(s) 197
SapI GCTCTTC 1 cut(s) 788
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 4 cut(s) 87, 154, 351, 504
Sau96I GGNCC 4 cut(s) 591, 592, 673, 853
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 5 cut(s) 368, 557, 573, 646, 857
SduI GDGCHC 1 cut(s) 595
SexAI ACCWGGT 1 cut(s) 855
SfoI GGCGCC 1 cut(s) 306
Sfr303I CCGCGG 1 cut(s) 197
SgrBI CCGCGG 1 cut(s) 197
SinI GGWCC 2 cut(s) 673, 853
Sse9I AATT 2 cut(s) 182, 895
SspDI GGCGCC 1 cut(s) 304
StyD4I CCNGG 5 cut(s) 366, 555, 571, 644, 855
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 2 cut(s) 347, 466
TaiI ACGT 3 cut(s) 234, 314, 774
TaqI TCGA 6 cut(s) 126, 375, 461, 507, 641, 653
TasI AATT 2 cut(s) 182, 895
TfiI GAWTC 2 cut(s) 413, 443
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseI GCWGC 4 cut(s) 20, 484, 636, 798
TspGWI ACGGA 1 cut(s) 894
Tth111I GACNNNGTC 1 cut(s) 646
VpaK11BI GGWCC 2 cut(s) 673, 853
XapI RAATTY 1 cut(s) 895
XmiI GTMKAC 1 cut(s) 363
ZraI GACGTC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.