HEAT-like repeat
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G08947 AT3G08947 |
| fragaria_vesca | FvH4_6g10890 FvH4_6g10890 FvH4_6g10890 FvH4_6g10970 |
| malus_domestica | MD04G1163100.v1.1 MD12G1176600.v1.1 |
| prunus_persica | Prupe.6G282600_v2.0.a1 Prupe.6G282600_v2.0.a1 |
| pyrus_communis | pycom04g14590 pycom04g14600 pycom12g16660 pycom12g16670 |
| rosa_chinensis | RchiOBHm_Chr3g0462121 RchiOBHm_Chr3g0462271 |
| rosa_laevigata | RLG00000024872 RLG00000024881 |
| rosa_multiflora | Rmu_sc0006188.1_g000001 Rmu_sc0007627.1_g000010 Rmu_sc0020622.1_g000002 Rmu_sc0031852.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00417630 Rroxscaffold_6G00417720 |
| rosa_rugosa | Rorug03G0055400 |
| rosa_samantha | Rh3AG113300 Rh3AG114100 Rh3BG116200 Rh3BG117200 Rh3CG119000 Rh3CG120000 Rh3DG118100 Rh3DG119000 |
| rosa_wichuraiana | Rw3G009560 Rw3G009630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 304, 691 |
| AatII | GACGTC | 1 cut(s) | 959 |
| Acc36I | ACCTGC | 2 cut(s) | 1217, 1947 |
| AccI | GTMKAC | 3 cut(s) | 1571, 2192, 2326 |
| AccII | CGCG | 1 cut(s) | 1152 |
| AciI | CCGC | 4 cut(s) | 1047, 1595, 2228, 2498 |
| AclWI | GGATC | 1 cut(s) | 409 |
| AcsI | RAATTY | 4 cut(s) | 54, 893, 1978, 2344 |
| AcuI | CTGAAG | 4 cut(s) | 84, 597, 1673, 2315 |
| AcyI | GRCGYC | 1 cut(s) | 956 |
| AfaI | GTAC | 7 cut(s) | 61, 169, 755, 1937, 1952, 2063, 2478 |
| AfeI | AGCGCT | 2 cut(s) | 1799, 2112 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 172, 280, 1334, 1369, 2041, 2504 |
| AflII | CTTAAG | 3 cut(s) | 188, 292, 2407 |
| AgeI | ACCGGT | 1 cut(s) | 2118 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1299 |
| AjnI | CCWGG | 4 cut(s) | 374, 615, 1070, 1755 |
| Alw21I | GWGCWC | 4 cut(s) | 863, 1903, 2235, 2242 |
| Alw26I | GTCTC | 5 cut(s) | 677, 963, 1719, 1926, 2408 |
| Alw44I | GTGCAC | 1 cut(s) | 1899 |
| AlwI | GGATC | 1 cut(s) | 409 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2453 |
| Ama87I | CYCGRG | 1 cut(s) | 1332 |
| Aor51HI | AGCGCT | 2 cut(s) | 1799, 2112 |
| AoxI | GGCC | 5 cut(s) | 391, 687, 828, 1189, 2482 |
| ApaLI | GTGCAC | 1 cut(s) | 1899 |
| ApoI | RAATTY | 4 cut(s) | 54, 893, 1978, 2344 |
| AseI | ATTAAT | 1 cut(s) | 1250 |
| AsiGI | ACCGGT | 1 cut(s) | 2118 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1477, 1521 |
| AspLEI | GCGC | 3 cut(s) | 1800, 2113, 2607 |
| AspS9I | GGNCC | 4 cut(s) | 1190, 1219, 2483, 2509 |
| AsuHPI | GGTGA | 8 cut(s) | 300, 532, 917, 1436, 1620, 2036, 2075, 2474 |
| AvaI | CYCGRG | 1 cut(s) | 1332 |
| AvaII | GGWCC | 2 cut(s) | 1219, 2509 |
| BaeGI | GKGCMC | 1 cut(s) | 1903 |
| BanII | GRGCYC | 3 cut(s) | 604, 863, 2235 |
| BbsI | GAAGAC | 2 cut(s) | 1514, 2537 |
| Bbv12I | GWGCWC | 4 cut(s) | 863, 1903, 2235, 2242 |
| BccI | CCATC | 9 cut(s) | 241, 504, 643, 1332, 1517, 1541, 1960, 2063, 2239 |
| BceAI | ACGGC | 5 cut(s) | 702, 815, 1842, 2019, 2592 |
| BciT130I | CCWGG | 4 cut(s) | 376, 617, 1072, 1757 |
| BclI | TGATCA | 1 cut(s) | 1656 |
| BcoDI | GTCTC | 5 cut(s) | 677, 963, 1719, 1926, 2408 |
| BfaI | CTAG | 6 cut(s) | 962, 1007, 1058, 1536, 1560, 2103 |
| BfmI | CTRYAG | 5 cut(s) | 540, 1866, 1893, 2387, 2445 |
| BfoI | RGCGCY | 2 cut(s) | 1801, 2114 |
| BfrI | CTTAAG | 3 cut(s) | 188, 292, 2407 |
| BfuAI | ACCTGC | 2 cut(s) | 1217, 1947 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1141 |
| BglII | AGATCT | 1 cut(s) | 502 |
| BmcAI | AGTACT | 1 cut(s) | 2063 |
| Bme1390I | CCNGG | 4 cut(s) | 376, 617, 1072, 1757 |
| Bme18I | GGWCC | 2 cut(s) | 1219, 2509 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1299 |
| BmeT110I | CYCGRG | 1 cut(s) | 1332 |
| BmgT120I | GGNCC | 4 cut(s) | 1190, 1219, 2483, 2509 |
| BmiI | GGNNCC | 2 cut(s) | 1474, 2510 |
| BmrFI | CCNGG | 4 cut(s) | 376, 617, 1072, 1757 |
| BmrI | ACTGGG | 1 cut(s) | 1926 |
| BmuI | ACTGGG | 1 cut(s) | 1926 |
| BpiI | GAAGAC | 2 cut(s) | 1514, 2537 |
| BpmI | CTGGAG | 4 cut(s) | 638, 1739, 2236, 2612 |
| BpuEI | CTTGAG | 1 cut(s) | 788 |
| BsaHI | GRCGYC | 1 cut(s) | 956 |
| BsaI | GGTCTC | 1 cut(s) | 1926 |
| BsaJI | CCNNGG | 7 cut(s) | 374, 459, 547, 615, 1367, 1453, 2040 |
| BsaWI | WCCGGW | 1 cut(s) | 2118 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1955, 1985 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 172, 280, 1334, 1369, 2041, 2504 |
| Bse118I | RCCGGY | 1 cut(s) | 2118 |
| Bse1I | ACTGG | 4 cut(s) | 394, 1908, 1921, 2253 |
| Bse3DI | GCAATG | 2 cut(s) | 1044, 1890 |
| BseBI | CCWGG | 4 cut(s) | 376, 617, 1072, 1757 |
| BseDI | CCNNGG | 7 cut(s) | 374, 459, 547, 615, 1367, 1453, 2040 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 172, 280, 1334, 1369, 2041, 2504 |
| BseMI | GCAATG | 2 cut(s) | 1044, 1890 |
| BseMII | CTCAG | 4 cut(s) | 32, 437, 1312, 2581 |
| BseNI | ACTGG | 4 cut(s) | 394, 1908, 1921, 2253 |
| BseRI | GAGGAG | 2 cut(s) | 500, 2000 |
| BseSI | GKGCMC | 1 cut(s) | 1903 |
| BseYI | CCCAGC | 1 cut(s) | 1504 |
| BsgI | GTGCAG | 1 cut(s) | 2228 |
| Bsh1236I | CGCG | 1 cut(s) | 1152 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1599 |
| BshFI | GGCC | 5 cut(s) | 393, 689, 830, 1191, 2484 |
| BshTI | ACCGGT | 1 cut(s) | 2118 |
| BsiEI | CGRYCG | 1 cut(s) | 1599 |
| BsiHKAI | GWGCWC | 4 cut(s) | 863, 1903, 2235, 2242 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1332 |
| BsiSI | CCGG | 1 cut(s) | 2119 |
| BsiWI | CGTACG | 1 cut(s) | 167 |
| BslFI | GGGAC | 4 cut(s) | 929, 1063, 1487, 2522 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 172, 280, 1334, 1369, 2041, 2504 |
| BsmAI | GTCTC | 5 cut(s) | 677, 963, 1719, 1926, 2408 |
| BsmBI | CGTCTC | 3 cut(s) | 677, 963, 2408 |
| BsmFI | GGGAC | 4 cut(s) | 929, 1063, 1487, 2522 |
| BsmI | GAATGC | 2 cut(s) | 1597, 2516 |
| BsnI | GGCC | 5 cut(s) | 393, 689, 830, 1191, 2484 |
| Bso31I | GGTCTC | 1 cut(s) | 1926 |
| BsoBI | CYCGRG | 1 cut(s) | 1332 |
| Bsp1286I | GDGCHC | 5 cut(s) | 604, 863, 1903, 2235, 2242 |
| Bsp1407I | TGTACA | 1 cut(s) | 1950 |
| Bsp143I | GATC | 5 cut(s) | 401, 502, 675, 1656, 1819 |
| Bsp68I | TCGCGA | 1 cut(s) | 1152 |
| BspACI | CCGC | 4 cut(s) | 1047, 1595, 2228, 2498 |
| BspANI | GGCC | 5 cut(s) | 393, 689, 830, 1191, 2484 |
| BspCNI | CTCAG | 4 cut(s) | 31, 436, 1311, 2580 |
| BspFNI | CGCG | 1 cut(s) | 1152 |
| BspHI | TCATGA | 3 cut(s) | 666, 1659, 2618 |
| BspLI | GGNNCC | 2 cut(s) | 1474, 2510 |
| BspMAI | CTGCAG | 2 cut(s) | 2391, 2449 |
| BspMI | ACCTGC | 2 cut(s) | 1217, 1947 |
| BspPI | GGATC | 1 cut(s) | 409 |
| BspTI | CTTAAG | 3 cut(s) | 188, 292, 2407 |
| BspTNI | GGTCTC | 1 cut(s) | 1926 |
| BsrDI | GCAATG | 2 cut(s) | 1044, 1890 |
| BsrFI | RCCGGY | 1 cut(s) | 2118 |
| BsrGI | TGTACA | 1 cut(s) | 1950 |
| BsrI | ACTGG | 4 cut(s) | 394, 1908, 1921, 2253 |
| BssAI | RCCGGY | 1 cut(s) | 2118 |
| BssECI | CCNNGG | 7 cut(s) | 374, 459, 547, 615, 1367, 1453, 2040 |
| BssMI | GATC | 5 cut(s) | 401, 502, 675, 1656, 1819 |
| BssNAI | GTATAC | 2 cut(s) | 2193, 2327 |
| BssNI | GRCGYC | 1 cut(s) | 956 |
| BssT1I | CCWWGG | 5 cut(s) | 459, 547, 1367, 1453, 2040 |
| Bst1107I | GTATAC | 2 cut(s) | 2193, 2327 |
| Bst2UI | CCWGG | 4 cut(s) | 376, 617, 1072, 1757 |
| Bst6I | CTCTTC | 2 cut(s) | 819, 1483 |
| BstACI | GRCGYC | 1 cut(s) | 956 |
| BstAFI | CTTAAG | 3 cut(s) | 188, 292, 2407 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1889, 2215, 2453 |
| BstAUI | TGTACA | 1 cut(s) | 1950 |
| BstC8I | GCNNGC | 7 cut(s) | 138, 717, 783, 1045, 1734, 1855, 1890 |
| BstEII | GGTNACC | 1 cut(s) | 306 |
| BstFNI | CGCG | 1 cut(s) | 1152 |
| BstH2I | RGCGCY | 2 cut(s) | 1801, 2114 |
| BstHHI | GCGC | 3 cut(s) | 1800, 2113, 2607 |
| BstKTI | GATC | 5 cut(s) | 404, 505, 678, 1659, 1822 |
| BstMAI | GTCTC | 5 cut(s) | 677, 963, 1719, 1926, 2408 |
| BstMBI | GATC | 5 cut(s) | 401, 502, 675, 1656, 1819 |
| BstMCI | CGRYCG | 1 cut(s) | 1599 |
| BstNI | CCWGG | 4 cut(s) | 376, 617, 1072, 1757 |
| BstNSI | RCATGY | 1 cut(s) | 1056 |
| BstPI | GGTNACC | 1 cut(s) | 306 |
| BstSCI | CCNGG | 4 cut(s) | 374, 615, 1070, 1755 |
| BstSFI | CTRYAG | 5 cut(s) | 540, 1866, 1893, 2387, 2445 |
| BstSLI | GKGCMC | 1 cut(s) | 1903 |
| BstUI | CGCG | 1 cut(s) | 1152 |
| BstV2I | GAAGAC | 2 cut(s) | 1514, 2537 |
| BstX2I | RGATCY | 2 cut(s) | 401, 502 |
| BstYI | RGATCY | 2 cut(s) | 401, 502 |
| BstZ17I | GTATAC | 2 cut(s) | 2193, 2327 |
| BsuRI | GGCC | 5 cut(s) | 393, 689, 830, 1191, 2484 |
| BtsI | GCAGTG | 3 cut(s) | 1530, 1786, 2211 |
| BtuMI | TCGCGA | 1 cut(s) | 1152 |
| BveI | ACCTGC | 2 cut(s) | 1217, 1947 |
| Cac8I | GCNNGC | 7 cut(s) | 138, 717, 783, 1045, 1734, 1855, 1890 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2453 |
| CciI | TCATGA | 3 cut(s) | 666, 1659, 2618 |
| CfoI | GCGC | 3 cut(s) | 1800, 2113, 2607 |
| Cfr10I | RCCGGY | 1 cut(s) | 2118 |
| Cfr13I | GGNCC | 4 cut(s) | 1190, 1219, 2483, 2509 |
| CseI | GACGC | 1 cut(s) | 2425 |
| Csp6I | GTAC | 7 cut(s) | 60, 168, 754, 1936, 1951, 2062, 2477 |
| CspAI | ACCGGT | 1 cut(s) | 2118 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1356, 1391 |
| CviQI | GTAC | 7 cut(s) | 60, 168, 754, 1936, 1951, 2062, 2477 |
| DpnI | GATC | 5 cut(s) | 403, 504, 677, 1658, 1821 |
| DpnII | GATC | 5 cut(s) | 401, 502, 675, 1656, 1819 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 304, 691 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1299 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 304, 691 |
| Eam1104I | CTCTTC | 2 cut(s) | 819, 1483 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1299 |
| EarI | CTCTTC | 2 cut(s) | 819, 1483 |
| Ecl136II | GAGCTC | 2 cut(s) | 861, 2233 |
| Eco130I | CCWWGG | 5 cut(s) | 459, 547, 1367, 1453, 2040 |
| Eco24I | GRGCYC | 3 cut(s) | 604, 863, 2235 |
| Eco31I | GGTCTC | 1 cut(s) | 1926 |
| Eco32I | GATATC | 1 cut(s) | 492 |
| Eco47I | GGWCC | 2 cut(s) | 1219, 2509 |
| Eco47III | AGCGCT | 2 cut(s) | 1799, 2112 |
| Eco53kI | GAGCTC | 2 cut(s) | 861, 2233 |
| Eco57I | CTGAAG | 4 cut(s) | 84, 597, 1673, 2315 |
| Eco88I | CYCGRG | 1 cut(s) | 1332 |
| Eco91I | GGTNACC | 1 cut(s) | 306 |
| EcoICRI | GAGCTC | 2 cut(s) | 861, 2233 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2509 |
| EcoO65I | GGTNACC | 1 cut(s) | 306 |
| EcoRI | GAATTC | 2 cut(s) | 54, 2344 |
| EcoRII | CCWGG | 4 cut(s) | 374, 615, 1070, 1755 |
| EcoRV | GATATC | 1 cut(s) | 492 |
| EcoT14I | CCWWGG | 5 cut(s) | 459, 547, 1367, 1453, 2040 |
| EcoT38I | GRGCYC | 3 cut(s) | 604, 863, 2235 |
| ErhI | CCWWGG | 5 cut(s) | 459, 547, 1367, 1453, 2040 |
| Esp3I | CGTCTC | 3 cut(s) | 677, 963, 2408 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 216, 248, 570, 602, 1872, 1904, 2529, 2561 |
| FaqI | GGGAC | 4 cut(s) | 929, 1063, 1487, 2522 |
| FauI | CCCGC | 1 cut(s) | 1040 |
| FauNDI | CATATG | 3 cut(s) | 1498, 1579, 2371 |
| FbaI | TGATCA | 1 cut(s) | 1656 |
| FblI | GTMKAC | 3 cut(s) | 1571, 2192, 2326 |
| FriOI | GRGCYC | 3 cut(s) | 604, 863, 2235 |
| FspBI | CTAG | 6 cut(s) | 962, 1007, 1058, 1536, 1560, 2103 |
| GlaI | GCGC | 3 cut(s) | 1799, 2112, 2606 |
| GsaI | CCCAGC | 1 cut(s) | 1508 |
| GsuI | CTGGAG | 4 cut(s) | 638, 1739, 2236, 2612 |
| HaeII | RGCGCY | 2 cut(s) | 1801, 2114 |
| HaeIII | GGCC | 5 cut(s) | 393, 689, 830, 1191, 2484 |
| HapII | CCGG | 1 cut(s) | 2119 |
| HgaI | GACGC | 1 cut(s) | 2425 |
| HhaI | GCGC | 3 cut(s) | 1800, 2113, 2607 |
| Hin1I | GRCGYC | 1 cut(s) | 956 |
| Hin6I | GCGC | 3 cut(s) | 1798, 2111, 2605 |
| HinP1I | GCGC | 3 cut(s) | 1798, 2111, 2605 |
| HincII | GTYRAC | 1 cut(s) | 456 |
| HindII | GTYRAC | 1 cut(s) | 456 |
| HindIII | AAGCTT | 2 cut(s) | 1734, 2313 |
| HpaII | CCGG | 1 cut(s) | 2119 |
| HphI | GGTGA | 8 cut(s) | 300, 532, 917, 1436, 1620, 2036, 2075, 2474 |
| Hpy166II | GTNNAC | 7 cut(s) | 387, 456, 523, 1572, 1901, 2193, 2327 |
| Hpy188I | TCNGA | 9 cut(s) | 319, 954, 1677, 1692, 1705, 1770, 1824, 2244, 2554 |
| Hpy8I | GTNNAC | 7 cut(s) | 387, 456, 523, 1572, 1901, 2193, 2327 |
| HpyAV | CCTTC | 6 cut(s) | 117, 1181, 1249, 1373, 1385, 1417 |
| HpyCH4IV | ACGT | 5 cut(s) | 170, 800, 934, 956, 2466 |
| HpySE526I | ACGT | 5 cut(s) | 170, 800, 934, 956, 2466 |
| Hsp92I | GRCGYC | 1 cut(s) | 956 |
| HspAI | GCGC | 3 cut(s) | 1798, 2111, 2605 |
| Ksp22I | TGATCA | 1 cut(s) | 1656 |
| Kzo9I | GATC | 5 cut(s) | 401, 502, 675, 1656, 1819 |
| LmnI | GCTCC | 7 cut(s) | 858, 866, 1411, 1684, 2118, 2222, 2230 |
| MaeI | CTAG | 6 cut(s) | 962, 1007, 1058, 1536, 1560, 2103 |
| MaeII | ACGT | 5 cut(s) | 170, 800, 934, 956, 2466 |
| MaeIII | GTNAC | 5 cut(s) | 217, 306, 2024, 2434, 2462 |
| MalI | GATC | 5 cut(s) | 403, 504, 677, 1658, 1821 |
| MboI | GATC | 5 cut(s) | 401, 502, 675, 1656, 1819 |
| MboII | GAAGA | 8 cut(s) | 107, 682, 836, 887, 1010, 1470, 1514, 2537 |
| MfeI | CAATTG | 2 cut(s) | 741, 846 |
| MflI | RGATCY | 2 cut(s) | 401, 502 |
| MhlI | GDGCHC | 5 cut(s) | 604, 863, 1903, 2235, 2242 |
| MlyI | GAGTC | 6 cut(s) | 415, 911, 1288, 1681, 2243, 2581 |
| MmeI | TCCRAC | 1 cut(s) | 1368 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1477, 1521 |
| MseI | TTAA | 7 cut(s) | 189, 293, 411, 1250, 2340, 2408, 2493 |
| MslI | CAYNNNNRTG | 2 cut(s) | 671, 2424 |
| MspA1I | CMGCKG | 2 cut(s) | 44, 2500 |
| MspCI | CTTAAG | 3 cut(s) | 188, 292, 2407 |
| MspI | CCGG | 1 cut(s) | 2119 |
| MspR9I | CCNGG | 4 cut(s) | 376, 617, 1072, 1757 |
| MunI | CAATTG | 2 cut(s) | 741, 846 |
| Mva1269I | GAATGC | 2 cut(s) | 1597, 2516 |
| MvaI | CCWGG | 4 cut(s) | 376, 617, 1072, 1757 |
| MvnI | CGCG | 1 cut(s) | 1152 |
| NdeI | CATATG | 3 cut(s) | 1498, 1579, 2371 |
| NdeII | GATC | 5 cut(s) | 401, 502, 675, 1656, 1819 |
| NlaIV | GGNNCC | 2 cut(s) | 1474, 2510 |
| NmuCI | GTSAC | 4 cut(s) | 306, 2024, 2434, 2462 |
| NruI | TCGCGA | 1 cut(s) | 1152 |
| NspI | RCATGY | 1 cut(s) | 1056 |
| PagI | TCATGA | 3 cut(s) | 666, 1659, 2618 |
| PctI | GAATGC | 2 cut(s) | 1597, 2516 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1477, 1521 |
| PfeI | GAWTC | 4 cut(s) | 161, 1556, 1583, 2080 |
| Pfl23II | CGTACG | 1 cut(s) | 167 |
| PinAI | ACCGGT | 1 cut(s) | 2118 |
| PleI | GAGTC | 6 cut(s) | 415, 911, 1288, 1680, 2243, 2581 |
| PpsI | GAGTC | 6 cut(s) | 415, 911, 1288, 1680, 2243, 2581 |
| PpuMI | RGGWCCY | 1 cut(s) | 2509 |
| PshBI | ATTAAT | 1 cut(s) | 1250 |
| Psp124BI | GAGCTC | 2 cut(s) | 863, 2235 |
| Psp5II | RGGWCCY | 1 cut(s) | 2509 |
| Psp6I | CCWGG | 4 cut(s) | 374, 615, 1070, 1755 |
| PspEI | GGTNACC | 1 cut(s) | 306 |
| PspFI | CCCAGC | 1 cut(s) | 1504 |
| PspGI | CCWGG | 4 cut(s) | 374, 615, 1070, 1755 |
| PspLI | CGTACG | 1 cut(s) | 167 |
| PspN4I | GGNNCC | 2 cut(s) | 1474, 2510 |
| PspPI | GGNCC | 4 cut(s) | 1190, 1219, 2483, 2509 |
| PspPPI | RGGWCCY | 1 cut(s) | 2509 |
| PstI | CTGCAG | 2 cut(s) | 2391, 2449 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2453 |
| PsuI | RGATCY | 2 cut(s) | 401, 502 |
| PvuII | CAGCTG | 1 cut(s) | 44 |
| RruI | TCGCGA | 1 cut(s) | 1152 |
| RsaI | GTAC | 7 cut(s) | 61, 169, 755, 1937, 1952, 2063, 2478 |
| RsaNI | GTAC | 7 cut(s) | 60, 168, 754, 1936, 1951, 2062, 2477 |
| RseI | CAYNNNNRTG | 2 cut(s) | 671, 2424 |
| SacI | GAGCTC | 2 cut(s) | 863, 2235 |
| SaqAI | TTAA | 7 cut(s) | 189, 293, 411, 1250, 2340, 2408, 2493 |
| Sau3AI | GATC | 5 cut(s) | 401, 502, 675, 1656, 1819 |
| Sau96I | GGNCC | 4 cut(s) | 1190, 1219, 2483, 2509 |
| ScaI | AGTACT | 1 cut(s) | 2063 |
| SchI | GAGTC | 6 cut(s) | 415, 911, 1288, 1681, 2243, 2581 |
| ScrFI | CCNGG | 4 cut(s) | 376, 617, 1072, 1757 |
| SduI | GDGCHC | 5 cut(s) | 604, 863, 1903, 2235, 2242 |
| SfcI | CTRYAG | 5 cut(s) | 540, 1866, 1893, 2387, 2445 |
| SinI | GGWCC | 2 cut(s) | 1219, 2509 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 671, 2424 |
| SmlI | CTYRAG | 4 cut(s) | 188, 292, 767, 2407 |
| SmoI | CTYRAG | 4 cut(s) | 188, 292, 767, 2407 |
| SsiI | CCGC | 4 cut(s) | 1047, 1595, 2228, 2498 |
| SspI | AATATT | 2 cut(s) | 1033, 1615 |
| SspMI | CTAG | 6 cut(s) | 962, 1007, 1058, 1536, 1560, 2103 |
| SstI | GAGCTC | 2 cut(s) | 863, 2235 |
| StyD4I | CCNGG | 4 cut(s) | 374, 615, 1070, 1755 |
| StyI | CCWWGG | 5 cut(s) | 459, 547, 1367, 1453, 2040 |
| TaiI | ACGT | 5 cut(s) | 173, 803, 937, 959, 2469 |
| TaqI | TCGA | 1 cut(s) | 238 |
| TatI | WGTACW | 3 cut(s) | 1950, 2061, 2476 |
| TauI | GCSGC | 1 cut(s) | 2500 |
| TfiI | GAWTC | 4 cut(s) | 161, 1556, 1583, 2080 |
| Tru1I | TTAA | 7 cut(s) | 189, 293, 411, 1250, 2340, 2408, 2493 |
| Tru9I | TTAA | 7 cut(s) | 189, 293, 411, 1250, 2340, 2408, 2493 |
| TseFI | GTSAC | 4 cut(s) | 306, 2024, 2434, 2462 |
| Tsp45I | GTSAC | 4 cut(s) | 306, 2024, 2434, 2462 |
| TspGWI | ACGGA | 2 cut(s) | 572, 670 |
| Vha464I | CTTAAG | 3 cut(s) | 188, 292, 2407 |
| VneI | GTGCAC | 1 cut(s) | 1899 |
| VpaK11BI | GGWCC | 2 cut(s) | 1219, 2509 |
| VspI | ATTAAT | 1 cut(s) | 1250 |
| XapI | RAATTY | 4 cut(s) | 54, 893, 1978, 2344 |
| XbaI | TCTAGA | 2 cut(s) | 1006, 1559 |
| XceI | RCATGY | 1 cut(s) | 1056 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 503 |
| XmiI | GTMKAC | 3 cut(s) | 1571, 2192, 2326 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1477, 1521 |
| XspI | CTAG | 6 cut(s) | 962, 1007, 1058, 1536, 1560, 2103 |
| ZraI | GACGTC | 1 cut(s) | 957 |
| ZrmI | AGTACT | 1 cut(s) | 2063 |